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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome

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condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:102,930,270...103,056,558
Ensembl chr 9:103,010,713...103,057,101 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) MGI PMID:20551173 PMID:26490168 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRD4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 MGI PMID:10938129 PMID:16339075 PMID:18039861 NCBI chr 6:13,836,332...13,883,459
Ensembl chr 6:13,836,324...13,873,877 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chr29:20,829,304...20,849,465
Ensembl chr29:20,828,206...20,839,891 		JBrowse link
G CDX2 caudal type homeobox 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:7,080,142...7,088,010
Ensembl chr 3:7,078,503...7,087,285 		JBrowse link
G CHEK1 checkpoint kinase 1 located_in ISO (PMID:9382850) UniProt PMID:9382850 NCBI chr 1:116,768,141...116,809,557
Ensembl chr 1:116,767,944...116,801,371 		JBrowse link
G CHMP1A charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:74,990,706...75,002,074
Ensembl chr 5:74,990,410...75,001,988 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G DNMT3L DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:87,991,868...88,006,399
Ensembl chr 2:87,991,936...88,005,459 		JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr17:46,147,280...46,149,129
Ensembl chr17:46,148,286...46,148,909 		JBrowse link
G H2AFX histone H2AX located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) MGI PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr 1:110,466,692...110,468,776
Ensembl chr 1:110,467,775...110,468,206 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107
G IHO1 interactor of HORMAD1 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:10,593,516...10,653,519 JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr25:58,983,180...59,130,431
Ensembl chr25:58,983,207...59,130,074 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LOC103225123 argonaute RISC catalytic component 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:96,784,226...96,923,183
Ensembl chr20:96,801,900...96,923,148 		JBrowse link
G LOC103243400 tubulin gamma-1 chain located_in ISO (MGI:3688382|PMID:15007207)
(PMID:15007207)		 UniProt PMID:15007207 MGI:3688382 NCBI chr16:63,675,056...63,680,596
Ensembl chr16:63,675,253...63,680,571 		JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing located_in ISO (PMID:12762840) HGNC-UCL PMID:12762840 NCBI chr14:63,263,101...63,380,607 JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MLH3 mutL homolog 3 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chr24:52,231,468...52,266,179 JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:57,283,723...57,397,871
Ensembl chr20:57,284,575...57,396,797 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr11:6,534,243...6,566,515
Ensembl chr11:6,535,282...6,566,546 		JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 1:125,212,744...125,285,488
Ensembl chr 1:125,210,486...125,284,920 		JBrowse link
G NCAPG non-SMC condensin I complex subunit G located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr27:32,380,722...32,413,659
Ensembl chr27:32,377,575...32,413,494 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:126,658,802...126,731,005
Ensembl chr21:126,658,702...126,728,510 		JBrowse link
G NCAPH non-SMC condensin I complex subunit H located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr14:755,840...792,053
Ensembl chr14:755,897...792,154 		JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,978,771...32,995,055
Ensembl chr19:32,978,562...32,997,160 		JBrowse link
G NEK2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr25:17,816,929...17,847,348
Ensembl chr25:17,829,546...17,842,463 		JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:8,554,373...8,563,865
Ensembl chr10:8,554,583...8,563,817 		JBrowse link
G NOL6 nucleolar protein 6 located_in ISO (MGI:2179879|PMID:11895476) UniProt PMID:11895476 MGI:2179879 NCBI chr12:46,791,704...46,804,091
Ensembl chr12:46,791,725...46,805,338 		JBrowse link
G PSMC3IP PSMC3 interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:63,709,351...63,715,338
Ensembl chr16:63,709,982...63,714,804 		JBrowse link
G RAD21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:111,486,356...111,515,641
Ensembl chr 8:111,486,048...111,507,729 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:55,299,061...55,335,200
Ensembl chr 2:55,307,711...55,333,874 		JBrowse link
G RAD50 RAD50 double strand break repair protein located_in ISO
IEA		 sex vesicles/chromatin of XY bivalent RGD
TreeGrafter		 PMID:10855503 GO_REF:0000118 RGD:2300257 NCBI chr23:35,375,206...35,458,801
Ensembl chr23:35,375,305...35,458,622 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G RCC1 regulator of chromosome condensation 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:104,256,895...104,279,948
Ensembl chr20:104,257,877...104,278,458 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr24:1,157,135...1,165,927 JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:62,297,483...62,299,194
Ensembl chr 8:62,297,608...62,298,705 		JBrowse link
G RSPH1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:86,348,365...86,371,908
Ensembl chr 2:86,348,056...86,371,858 		JBrowse link
G SHOC1 shortage in chiasmata 1 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr12:27,716,014...27,820,858
Ensembl chr12:27,720,405...27,821,674 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr19:27,814,944...27,879,692
Ensembl chr19:27,815,442...27,879,640 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:35,377,381...35,423,218
Ensembl chr12:35,374,947...35,423,364 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:30,405,713...30,441,943
Ensembl chr15:30,403,826...30,441,935 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,853,456...12,893,098
Ensembl chr28:12,853,404...12,891,638 		JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 located_in ISO (PMID:17452644) MGI PMID:17452644 NCBI chr19:21,401,730...21,423,059
Ensembl chr19:21,403,341...21,419,663 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:18,712,236...18,827,120
Ensembl chr20:18,712,587...18,823,277 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr11:96,980,937...96,992,225 JBrowse link
G TEX11 testis expressed 11 located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr  X:60,378,774...60,698,158 JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566 		JBrowse link
G TTN titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr10:64,074,994...64,379,055
Ensembl chr10:64,076,021...64,347,205 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH14orf39 chromosome unknown C14orf39 homolog located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:37,596,061...37,707,136
Ensembl chr24:37,626,089...37,676,361 		JBrowse link
G INCENP inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chr 1:11,695,803...11,725,633
Ensembl chr 1:11,692,559...11,720,940 		JBrowse link
G SDHD succinate dehydrogenase complex subunit D located_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:103,443,752...103,517,917 JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254)
(PMID:15944401), (PMID:22164254)		 MGI
HGNC-UCL		 PMID:15944401 PMID:22164254 MGI:3581466 NCBI chr26:53,416,791...53,429,688
Ensembl chr26:53,418,202...53,428,756 		JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254), (PMID:22854038) HGNC-UCL PMID:15944401 PMID:22164254 PMID:22854038 MGI:3581466 NCBI chr 6:11,581,915...11,599,770 JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr 6:11,586,616...11,587,931 JBrowse link
G SYCE3 synaptonemal complex central element protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:33,023,956...33,038,641
Ensembl chr19:33,023,960...33,038,600 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:18,712,236...18,827,120
Ensembl chr20:18,712,587...18,823,277 		JBrowse link
G TEX11 testis expressed 11 located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr  X:60,378,774...60,698,158 JBrowse link
G TEX11 testis expressed 11 located_in IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:60,378,787...60,552,856 JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr21:10,826,799...10,841,579
Ensembl chr21:10,826,846...10,841,382 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:33,800,279...33,807,986
Ensembl chr 4:33,801,230...33,807,457 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A part_of IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:6,865,990...6,945,179
Ensembl chr 1:6,866,840...6,941,486 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B part_of IEA UniProt
InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr11:105,738,247...105,772,539
Ensembl chr11:105,738,867...105,772,002 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MLH3 mutL homolog 3 located_in ISO (PMID:12091911), (PMID:17696610) MGI PMID:12091911 PMID:17696610 NCBI chr24:52,231,468...52,266,179 JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase located_in ISO (PMID:10728666) UniProt PMID:10728666 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chr16:63,162,827...63,243,928 JBrowse link
G BRCA2 BRCA2 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chr 3:11,070,086...11,155,257
Ensembl chr 3:11,071,682...11,155,213 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,179,495...21,230,078
Ensembl chr19:21,180,194...21,228,120 		JBrowse link
G INCENP inner centromere protein located_in ISO (PMID:19283064) MGI PMID:19283064 NCBI chr 1:11,695,803...11,725,633
Ensembl chr 1:11,692,559...11,720,940 		JBrowse link
G KASH5 KASH domain containing 5 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:42,561,606...42,599,442 JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:2,369,069...2,619,149
Ensembl chr13:2,405,699...2,619,081 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:55,299,061...55,335,200
Ensembl chr 2:55,307,711...55,333,874 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr24:1,157,135...1,165,927 JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:49,514,652...49,558,490
Ensembl chr  X:49,515,061...49,558,447 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr19:27,814,944...27,879,692
Ensembl chr19:27,815,442...27,879,640 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:103,506,779...103,543,836
Ensembl chr 9:103,506,689...103,545,523 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,853,456...12,893,098
Ensembl chr28:12,853,404...12,891,638 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:4,214,713...4,283,451
Ensembl chr 2:4,226,063...4,282,751 		JBrowse link
G SYCP2L synaptonemal complex protein 2 like located_in ISO (PMID:26362258) MGI PMID:26362258 NCBI chr17:61,166,225...61,244,576 JBrowse link
G SYCP2L synaptonemal complex protein 2 like located_in IEA TreeGrafter GO_REF:0000118 Ensembl chr17:61,210,235...61,246,276 JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... MGI:1352918 RGD:11035335 NCBI chr11:96,980,937...96,992,225 JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:57,283,723...57,397,871
Ensembl chr20:57,284,575...57,396,797 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA InterPro GO_REF:0000002 NCBI chr29:20,829,304...20,849,465
Ensembl chr29:20,828,206...20,839,891 		JBrowse link
G FAM9A family with sequence similarity 9 member A located_in IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:7,290,644...7,298,243 JBrowse link
G FAM9C family with sequence similarity 9 member C located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:11,496,335...11,541,561
Ensembl chr  X:11,518,159...11,523,851 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) located_in ISO (MGI:2662793|PMID:12764197) UniProt PMID:12764197 MGI:2662793 NCBI chr28:9,688,493...9,718,633 JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107
G HORMAD2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,965,088...13,057,576
Ensembl chr19:12,977,944...13,007,296 		JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:41,747,485...41,750,266
Ensembl chr24:41,747,864...41,749,783 		JBrowse link
G INCENP inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chr 1:11,695,803...11,725,633
Ensembl chr 1:11,692,559...11,720,940 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr16:28,487,953...28,511,945
Ensembl chr16:28,490,434...28,511,130 		JBrowse link
G LOC103231893 synapsin-1 located_in ISO (PMID:14736746) MGI PMID:14736746 NCBI chr  X:44,748,994...44,797,053
Ensembl chr  X:44,750,046...44,797,009 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:2,364,537...2,418,379
Ensembl chr15:2,364,738...2,418,393 		JBrowse link
G MLH3 mutL homolog 3 located_in ISO (PMID:15467367), (PMID:16260499) MGI PMID:15467367 PMID:16260499 NCBI chr24:52,231,468...52,266,179 JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:57,283,723...57,397,871
Ensembl chr20:57,284,575...57,396,797 		JBrowse link
G MSH5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chr17:40,260,979...40,283,872
Ensembl chr17:40,261,125...40,282,511 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chr16:64,448,360...64,457,865
Ensembl chr16:64,449,057...64,457,868 		JBrowse link
G PLK1 polo like kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr24:1,157,135...1,165,927 JBrowse link
G RNF212 ring finger protein 212 located_in ISO (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283) UniProt PMID:23396135 PMID:24390283 MGI:5487470 MGI:5545848 NCBI chr27:47,665,652...47,705,754 JBrowse link
G RNF212 ring finger protein 212 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr27:47,666,083...47,706,076 JBrowse link
G RNF212B ring finger protein 212B located_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr29:23,609,267...23,646,333
Ensembl chr29:23,611,965...23,644,935 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:49,514,652...49,558,490
Ensembl chr  X:49,515,061...49,558,447 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr19:27,814,944...27,879,692
Ensembl chr19:27,815,442...27,879,640 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 9:103,506,779...103,543,836
Ensembl chr 9:103,506,689...103,545,523 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,853,456...12,893,098
Ensembl chr28:12,853,404...12,891,638 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr26:53,416,791...53,429,688
Ensembl chr26:53,418,202...53,428,756 		JBrowse link
G SYCE1L synaptonemal complex central element protein 1 like located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:62,681,266...62,699,020
Ensembl chr 5:62,685,006...62,698,946 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
Ensembl
InterPro		 PMID:8660935 GO_REF:0000002 GO_REF:0000107 RGD:9686370 NCBI chr20:18,712,236...18,827,120
Ensembl chr20:18,712,587...18,823,277 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO
IEA		 RGD
Ensembl		 PMID:9592139 GO_REF:0000107 RGD:69387 NCBI chr 2:4,214,713...4,283,451
Ensembl chr 2:4,226,063...4,282,751 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:96,980,937...96,992,225 JBrowse link
G TEX11 testis expressed 11 located_in ISO (MGI:3797180|PMID:18369460) UniProt PMID:18369460 MGI:3797180 NCBI chr  X:60,378,774...60,698,158 JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,853,456...12,893,098
Ensembl chr28:12,853,404...12,891,638 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:1464329 GO_REF:0000107 GO_REF:0000118 RGD:729937 NCBI chr20:18,712,236...18,827,120
Ensembl chr20:18,712,587...18,823,277 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chr11:96,980,937...96,992,225 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17810
    cellular anatomical entity 17710
      organelle 13068
        non-membrane-bounded organelle 4787
          intracellular non-membrane-bounded organelle 4787
            chromosome 1297
              nuclear chromosome 227
                condensed nuclear chromosome 86
                  checkpoint clamp complex 4
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 47
Path 2
Term Annotations click to browse term
  cellular_component 17810
    cellular anatomical entity 17710
      organelle 13068
        intracellular organelle 12635
          intracellular membrane-bounded organelle 11317
            nucleus 7008
              nuclear lumen 4059
                nuclear chromosome 227
                  condensed nuclear chromosome 86
                    checkpoint clamp complex 4
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 47
paths to the root