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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


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condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:21,402,068...21,527,006
Ensembl chr28:21,403,680...21,525,063 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:6,133,303...6,253,032
Ensembl chr15:6,145,895...6,253,085 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494 		JBrowse link
G BRD4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 MGI PMID:10938129 PMID:16339075 PMID:18039861 NCBI chr20:46,844,795...46,927,620
Ensembl chr20:46,891,514...46,927,608 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chr15:17,673,065...17,701,701
Ensembl chr15:17,673,609...17,695,336 		JBrowse link
G CDX2 caudal type homeobox 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr25:11,701,134...11,707,883
Ensembl chr25:11,700,779...11,707,127 		JBrowse link
G CHEK1 checkpoint kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669 		JBrowse link
G CHMP1A charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:63,897,544...63,906,515
Ensembl chr 5:63,897,594...63,905,550 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,228,662...26,265,377
Ensembl chr10:26,230,428...26,264,820 		JBrowse link
G DNMT3L DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chr31:38,099,100...38,111,432 JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810 		JBrowse link
G H2AX H2A.X variant histone located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,765,625...14,766,590
Ensembl chr 5:14,766,126...14,766,557 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:59,860,527...59,883,031
Ensembl chr17:59,860,934...59,882,980 		JBrowse link
G IHO1 interactor of HORMAD1 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,964,629...40,006,726
Ensembl chr20:39,965,480...39,990,756 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:28,581,855...28,739,327
Ensembl chr 7:28,593,425...28,739,272 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193 		JBrowse link
G LOC100856176 tubulin gamma-2 chain located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,322,054...20,326,696
Ensembl chr 9:20,322,253...20,363,455 		JBrowse link
G LOC102152531 synaptonemal complex protein 3-like located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing located_in IEA Ensembl GO_REF:0000107 NCBI chr10:46,325,312...46,438,376
Ensembl chr10:46,327,223...46,438,342 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:48,123,263...48,153,989
Ensembl chr 8:48,124,105...48,154,102 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr21:6,448,909...6,528,185
Ensembl chr21:6,449,822...6,527,119 		JBrowse link
G MSH4 mutS homolog 4 located_in ISO (PMID:18316482), (PMID:22164254), (PMID:23555294) MGI PMID:18316482 PMID:22164254 PMID:23555294 NCBI chr 6:70,745,777...70,822,507
Ensembl chr 6:70,746,634...70,823,004 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr27:38,475,145...38,497,818
Ensembl chr27:38,475,155...38,496,312 		JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 5:1,021,588...1,081,846
Ensembl chr 5:1,020,690...1,081,446 		JBrowse link
G NCAPG non-SMC condensin I complex subunit G located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr 3:91,279,800...91,322,679
Ensembl chr 3:91,281,077...91,322,803 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:20,649,088...20,712,208
Ensembl chr16:20,649,489...20,712,208 		JBrowse link
G NCAPH non-SMC condensin I complex subunit H located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr17:34,428,886...34,463,140
Ensembl chr17:34,420,060...34,462,666 		JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:16,790,137...16,801,851
Ensembl chr10:16,741,761...16,801,824 		JBrowse link
G NEK2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:10,039,617...10,052,511
Ensembl chr 7:10,040,187...10,052,512 		JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:28,486,049...28,498,711
Ensembl chr19:28,486,062...28,498,151 		JBrowse link
G NOL6 nucleolar protein 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,533,150...50,544,770
Ensembl chr11:50,533,453...50,545,094 		JBrowse link
G RAD21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr13:16,337,563...16,368,041
Ensembl chr13:16,338,972...16,368,035 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:19,741,398...19,771,675
Ensembl chr24:19,699,792...19,771,679 		JBrowse link
G RAD50 RAD50 double strand break repair protein ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819 		JBrowse link
G RAD51 RAD51 recombinase located_in
is_active_in		 ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606 		JBrowse link
G RCC1 regulator of chromosome condensation 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,948,159...71,972,902
Ensembl chr 2:71,948,165...71,964,353 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,165,637...4,171,488
Ensembl chr 8:4,165,879...4,171,486 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr29:16,016,134...16,018,046
Ensembl chr29:16,016,189...16,017,286 		JBrowse link
G RSPH1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr31:36,771,829...36,811,067
Ensembl chr31:36,789,571...36,812,050 		JBrowse link
G SHOC1 shortage in chiasmata 1 located_in IEA InterPro GO_REF:0000002 NCBI chr11:66,283,093...66,359,674
Ensembl chr11:66,282,572...66,363,922 		JBrowse link
G SHOC1 located_in IEA InterPro GO_REF:0000002
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr10:20,640,695...20,711,853
Ensembl chr10:20,640,187...20,711,822 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,091,728...60,155,295
Ensembl chr11:60,091,457...60,151,442 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr34:26,455,630...26,495,392
Ensembl chr34:26,456,142...26,494,725 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,326,402...9,354,049
Ensembl chr 6:9,326,448...9,353,204 		JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,055,508...26,074,972
Ensembl chr10:26,055,536...26,074,434 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133 		JBrowse link
G TEX11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:54,958,568...55,268,720
Ensembl chr  X:54,958,568...55,268,684 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:30,517,172...30,578,664
Ensembl chr23:30,516,125...30,578,108 		JBrowse link
G TTN titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr36:22,146,870...22,417,858
Ensembl chr36:22,147,824...22,417,826 		JBrowse link
G TUBG1 tubulin, gamma 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:20,358,683...20,363,455
Ensembl chr 9:20,322,253...20,363,455 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C8H14orf39 chromosome 8 C14orf39 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:35,486,476...35,542,214
Ensembl chr 8:35,487,228...35,542,218 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr18:54,361,376...54,384,649
Ensembl chr18:54,361,378...54,384,641 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254)
(PMID:15944401), (PMID:22164254)		 MGI
HGNC-UCL		 PMID:15944401 PMID:22164254 MGI:3581466 NCBI chr28:41,149,228...41,157,422
Ensembl chr28:41,149,229...41,157,371 		JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in IEA InterPro GO_REF:0000002 NCBI chr20:49,267,985...49,285,986
Ensembl chr20:49,281,773...49,283,880 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 located_in ISO (MGI:5008660|PMID:21637789), (PMID:22164254)
(PMID:21637789), (PMID:22164254)		 UniProt PMID:21637789 PMID:22164254 MGI:5008660 NCBI chr10:16,748,760...16,772,496
Ensembl chr10:16,758,528...16,772,344 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133 		JBrowse link
G TEX11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:54,958,568...55,268,720
Ensembl chr  X:54,958,568...55,268,684 		JBrowse link
G TEX12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,968,201...20,972,710
Ensembl chr 5:20,968,185...20,972,850 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component part_of IEA InterPro GO_REF:0000002 NCBI chr16:93,596...104,908
Ensembl chr16:93,626...125,597 		JBrowse link
G LOC119865601 checkpoint protein HUS1 part_of IEA InterPro GO_REF:0000002
G LOC119877459 checkpoint protein HUS1 part_of IEA InterPro GO_REF:0000002
G RAD1 RAD1 checkpoint DNA exonuclease part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:73,372,391...73,393,148
Ensembl chr 4:73,385,566...73,452,033 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr18:50,065,154...50,070,582
Ensembl chr18:50,065,685...50,070,710 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr26:8,309,384...8,333,414
Ensembl chr26:8,309,592...8,343,424 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:48,123,263...48,153,989
Ensembl chr 8:48,124,105...48,154,102 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494 		JBrowse link
G BRCA2 BRCA2 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:26,228,662...26,265,377
Ensembl chr10:26,230,428...26,264,820 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr18:54,361,376...54,384,649
Ensembl chr18:54,361,378...54,384,641 		JBrowse link
G KASH5 KASH domain containing 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:107,074,010...107,114,460
Ensembl chr 1:107,074,010...107,097,762 		JBrowse link
G LOC102152531 synaptonemal complex protein 3-like located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... MGI:1352918 RGD:11035335 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:38,818,983...39,024,784
Ensembl chr12:38,818,705...39,023,864 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:19,741,398...19,771,675
Ensembl chr24:19,699,792...19,771,679 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,165,637...4,171,488
Ensembl chr 8:4,165,879...4,171,486 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr 9:45,958,566...46,034,850
Ensembl chr 9:45,958,619...46,034,328 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:45,099,312...45,148,103
Ensembl chr  X:45,109,653...45,148,001 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr10:20,640,695...20,711,853
Ensembl chr10:20,640,187...20,711,822 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:21,889,690...21,928,367
Ensembl chr28:21,889,662...21,928,034 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,326,402...9,354,049
Ensembl chr 6:9,326,448...9,353,204 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)		 UniProt
MGI		 PMID:9933407 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 RGD:11035335 NCBI chr24:44,471,516...44,546,501
Ensembl chr24:44,471,828...44,546,495 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in IEA Ensembl GO_REF:0000107
G SYCP2L synaptonemal complex protein 2 like located_in ISO (PMID:26362258) MGI PMID:26362258 NCBI chr35:10,568,191...10,678,633
Ensembl chr35:10,575,849...10,664,032 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 located_in ISO (PMID:27760146) MGI PMID:27760146 NCBI chr 6:70,745,777...70,822,507
Ensembl chr 6:70,746,634...70,823,004 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA InterPro GO_REF:0000002 NCBI chr15:17,673,065...17,701,701
Ensembl chr15:17,673,609...17,695,336 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:6,836,043...6,868,268
Ensembl chr 6:6,836,086...6,868,818 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:59,860,527...59,883,031
Ensembl chr17:59,860,934...59,882,980 		JBrowse link
G HORMAD2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr26:23,254,313...23,342,644
Ensembl chr26:23,254,415...23,339,947 		JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:38,967,104...38,969,806
Ensembl chr 8:38,967,400...38,969,313 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr18:54,361,376...54,384,649
Ensembl chr18:54,361,378...54,384,641 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193 		JBrowse link
G LOC102152531 synaptonemal complex protein 3-like located_in ISO (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)		 MGI PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... NCBI chr  X:121,060,275...121,074,166 JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr23:6,889,108...6,938,117
Ensembl chr23:6,889,135...6,938,116 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:48,123,263...48,153,989
Ensembl chr 8:48,124,105...48,154,102 		JBrowse link
G MSH4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) MGI PMID:10809667 PMID:16260499 NCBI chr 6:70,745,777...70,822,507
Ensembl chr 6:70,746,634...70,823,004 		JBrowse link
G MSH5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chr12:1,221,278...1,243,042 JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chr 9:21,011,014...21,017,929
Ensembl chr 9:21,011,050...21,017,771 		JBrowse link
G PLK1 polo like kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:22,165,338...22,176,847
Ensembl chr 6:22,165,338...22,176,441 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:4,165,637...4,171,488
Ensembl chr 8:4,165,879...4,171,486 		JBrowse link
G RNF212 ring finger protein 212 located_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:91,453,856...91,483,674
Ensembl chr 3:91,453,367...91,474,547 		JBrowse link
G RNF212B ring finger protein 212B located_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 8:3,509,481...3,552,600
Ensembl chr 8:3,509,638...3,544,740 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:45,099,312...45,148,103
Ensembl chr  X:45,109,653...45,148,001 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr10:20,640,695...20,711,853
Ensembl chr10:20,640,187...20,711,822 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr28:21,889,690...21,928,367
Ensembl chr28:21,889,662...21,928,034 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,326,402...9,354,049
Ensembl chr 6:9,326,448...9,353,204 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in IEA InterPro GO_REF:0000002 NCBI chr28:41,149,228...41,157,422
Ensembl chr28:41,149,229...41,157,371 		JBrowse link
G SYCE1L synaptonemal complex central element protein 1 like located_in IEA InterPro GO_REF:0000002 NCBI chr 5:73,963,333...73,976,590
Ensembl chr 5:73,905,115...73,976,564 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
Ensembl
InterPro		 PMID:8660935 GO_REF:0000002 GO_REF:0000107 RGD:9686370 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chr24:44,471,516...44,546,501
Ensembl chr24:44,471,828...44,546,495 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in IEA Ensembl GO_REF:0000107
G SYN1 synapsin I located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,191,571...41,241,557
Ensembl chr  X:41,191,571...41,241,640 		JBrowse link
G TEX11 testis expressed 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:54,958,568...55,268,720
Ensembl chr  X:54,958,568...55,268,684 		JBrowse link
G TEX12 testis expressed 12 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:20,968,201...20,972,710
Ensembl chr 5:20,968,185...20,972,850 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102152531 synaptonemal complex protein 3-like located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,326,402...9,354,049
Ensembl chr 6:9,326,448...9,353,204 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:1464329 GO_REF:0000107 RGD:729937 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18016
    cellular anatomical structure 17739
      organelle 12446
        non-membrane-bounded organelle 4728
          intracellular non-membrane-bounded organelle 4728
            chromosome 1279
              nuclear chromosome 205
                condensed nuclear chromosome 84
                  checkpoint clamp complex 6
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 42
Path 2
Term Annotations click to browse term
  cellular_component 18016
    cellular anatomical structure 17739
      organelle 12446
        intracellular organelle 12013
          intracellular membrane-bounded organelle 10697
            nucleus 6577
              nuclear lumen 3900
                nuclear chromosome 205
                  condensed nuclear chromosome 84
                    checkpoint clamp complex 6
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 42
paths to the root