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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome

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condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in ISO (PMID:1864459) MGI PMID:1864459 NCBI chrNW_004955485:1,216,435...1,273,275
Ensembl chrNW_004955485:1,216,435...1,353,953 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO (PMID:22863743) MGI PMID:22863743 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:20551173), (PMID:26490168) MGI PMID:20551173 PMID:26490168 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528 		JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (PMID:10938129)
(PMID:10938129), (PMID:16339075), (PMID:18039861)		 MGI PMID:10938129 PMID:16339075 PMID:18039861 NCBI chrNW_004955495:7,959,033...7,989,216
Ensembl chrNW_004955495:7,957,510...7,988,498 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chrNW_004955550:1,108,764...1,138,862
Ensembl chrNW_004955550:1,108,449...1,138,862 		JBrowse link
G Cdx2 caudal type homeobox 2 located_in ISO (PMID:15509711) MGI PMID:15509711 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO (PMID:9382850) UniProt PMID:9382850 NCBI chrNW_004955412:26,627,606...26,650,554 JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:11559747) UniProt PMID:11559747 NCBI chrNW_004955541:3,216,972...3,223,636
Ensembl chrNW_004955541:3,216,972...3,223,634 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:22711701), (PMID:27760146) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... NCBI chrNW_004955413:24,685,311...24,724,269
Ensembl chrNW_004955413:24,684,073...24,724,344 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in ISO (PMID:16543361) MGI PMID:16543361 NCBI chrNW_004955407:41,177,582...41,186,965
Ensembl chrNW_004955407:41,177,582...41,186,965 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22164254), (PMID:22530760) MGI PMID:22164254 PMID:22530760 NCBI chrNW_004955413:130,214...155,381
Ensembl chrNW_004955413:132,711...152,720 		JBrowse link
G Iho1 interactor of HORMAD1 1 located_in ISO (MGI:5822944|PMID:27723721)
(PMID:27723721)		 UniProt PMID:27723721 MGI:5822944 NCBI chrNW_004955532:1,198,316...1,226,875 JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004955481:9,696,050...9,716,154
Ensembl chrNW_004955481:9,696,054...9,715,637 		JBrowse link
G LOC102025775 histone H2AX located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) MGI PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chrNW_004955412:20,203,173...20,204,714
Ensembl chrNW_004955412:20,203,772...20,204,203 		JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing located_in ISO (PMID:12762840) HGNC-UCL PMID:12762840 NCBI chrNW_004955441:11,012,910...11,116,965 JBrowse link
G Mlh1 mutL homolog 1 located_in ISO (PMID:18316482), (PMID:23555294), (PMID:24891606) MGI PMID:18316482 PMID:23555294 PMID:24891606 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:18316482), (PMID:22164254), (PMID:23555294) MGI PMID:18316482 PMID:22164254 PMID:23555294 NCBI chrNW_004955423:17,093,573...17,154,910
Ensembl chrNW_004955423:17,093,573...17,154,910 		JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955413:4,136,492...4,160,550
Ensembl chrNW_004955413:4,137,216...4,160,550 		JBrowse link
G Ncapd3 non-SMC condensin II complex subunit D3 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955412:34,967,464...35,035,103
Ensembl chrNW_004955412:34,963,854...35,035,111 		JBrowse link
G Ncapg non-SMC condensin I complex subunit G located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955480:6,399,891...6,430,617
Ensembl chrNW_004955480:6,399,960...6,430,645 		JBrowse link
G Ncapg2 non-SMC condensin II complex subunit G2 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955579:896,507...955,515
Ensembl chrNW_004955579:895,249...955,517 		JBrowse link
G Ncaph non-SMC condensin I complex subunit H located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955470:3,878,896...3,909,087
Ensembl chrNW_004955470:3,878,883...3,909,146 		JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955413:33,492,348...33,503,804 JBrowse link
G Nek2 NIMA related kinase 2 located_in ISO (PMID:15479717) MGI PMID:15479717 NCBI chrNW_004955406:5,553,661...5,563,648
Ensembl chrNW_004955406:5,553,819...5,566,361 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO (PMID:11342549) UniProt PMID:11342549 NCBI chrNW_004955459:8,315,893...8,325,141
Ensembl chrNW_004955459:8,315,967...8,324,765 		JBrowse link
G Nol6 nucleolar protein 6 located_in ISO (MGI:2179879|PMID:11895476)
(PMID:11895476)		 UniProt PMID:11895476 MGI:2179879 NCBI chrNW_004955472:2,210,490...2,225,275
Ensembl chrNW_004955472:2,211,079...2,224,259 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO (PMID:24797475) MGI PMID:24797475 NCBI chrNW_004955417:22,941,549...22,966,395
Ensembl chrNW_004955417:22,941,479...22,966,837 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:24797475) MGI PMID:24797475 NCBI chrNW_004955596:455,932...485,853
Ensembl chrNW_004955596:457,835...486,046 		JBrowse link
G Rad50 RAD50 double strand break repair protein ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chrNW_004955408:3,953,801...4,035,494
Ensembl chrNW_004955408:3,953,800...4,035,494 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:14668445), (PMID:18283110), (PMID:20551173), (PMID:22164254), (PMID:22530760), (PMID:23555294), (PMID:24891606), (PMID:26490168), (PMID:27760146) MGI PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO (PMID:15014043) UniProt PMID:15014043 NCBI chrNW_004955452:7,612,784...7,643,275
Ensembl chrNW_004955452:7,612,784...7,643,275 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:18084284), (PMID:22164254), (PMID:24797475) MGI PMID:18084284 PMID:22164254 PMID:24797475 NCBI chrNW_004955409:36,223,783...36,231,749
Ensembl chrNW_004955409:36,223,844...36,230,948 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) UniProt PMID:19465021 NCBI chrNW_004955444:12,740,172...12,751,674 JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (PMID:9578619) MGI PMID:9578619 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in ISO (MGI:6159552|PMID:29742103)
(PMID:29742103)		 UniProt PMID:29742103 MGI:6159552 NCBI chrNW_004955419:15,563,949...15,644,502
Ensembl chrNW_004955419:15,566,339...15,646,184 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:22164254) MGI PMID:22164254 NCBI chrNW_004955413:29,709,473...29,765,043
Ensembl chrNW_004955413:29,709,473...29,765,043 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955419:22,245,843...22,294,508
Ensembl chrNW_004955419:22,245,843...22,294,508 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chrNW_004955448:10,926,653...10,960,624
Ensembl chrNW_004955448:10,927,877...10,960,624 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22164254), (PMID:24797475) MGI PMID:22164254 PMID:24797475 NCBI chrNW_004955573:602,635...631,775
Ensembl chrNW_004955573:602,016...630,936 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO (PMID:17452644) MGI PMID:17452644 NCBI chrNW_004955413:24,851,626...24,868,352
Ensembl chrNW_004955413:24,851,626...24,865,575 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:22854038), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chrNW_004955475:10,057,708...10,432,087 JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO (PMID:14718568) MGI PMID:14718568 NCBI chrNW_004955501:4,907,687...4,974,995
Ensembl chrNW_004955501:4,908,137...4,976,453 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chrNW_004955403:18,057,344...18,328,389 JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH14orf39 chromosome unknown C14orf39 homolog located_in ISO (MGI:5822939|PMID:27796301)
(PMID:27796301)		 UniProt PMID:27796301 MGI:5822939 NCBI chrNW_004955466:9,158,022...9,194,088
Ensembl chrNW_004955466:9,157,944...9,195,226 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chrNW_004955511:5,705,948...5,724,167
Ensembl chrNW_004955511:5,706,201...5,720,772 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254)
(PMID:15944401), (PMID:22164254)		 MGI
HGNC-UCL		 PMID:15944401 PMID:22164254 MGI:3581466 NCBI chrNW_004955507:6,263,070...6,271,289
Ensembl chrNW_004955507:6,264,059...6,271,729 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254), (PMID:22854038)
(PMID:15944401), (PMID:22164254), (PMID:22854038)		 HGNC-UCL
MGI		 PMID:15944401 PMID:22164254 PMID:22854038 MGI:3581466 NCBI chrNW_004955415:31,957,244...31,969,922
Ensembl chrNW_004955415:31,957,489...31,969,859 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in ISO (MGI:5008660|PMID:21637789), (PMID:22164254)
(PMID:21637789), (PMID:22164254)		 UniProt PMID:21637789 PMID:22164254 MGI:5008660 NCBI chrNW_004955413:33,537,646...33,573,787
Ensembl chrNW_004955413:33,537,753...33,563,373 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:12584241), (PMID:23133398) MGI PMID:12584241 PMID:23133398 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chrNW_004955475:10,057,708...10,432,087 JBrowse link
G Tex12 testis expressed 12 located_in ISO (MGI:3664716|PMID:16968740), (PMID:22164254), (PMID:22854038)
(PMID:16968740), (PMID:22164254), (PMID:22854038)		 MGI PMID:16968740 PMID:22164254 PMID:22854038 MGI:3664716 NCBI chrNW_004955412:13,829,637...13,834,481
Ensembl chrNW_004955412:13,831,353...13,834,481 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of ISO (PMID:31776186), (PMID:36841485) UniProt PMID:31776186 PMID:36841485 NCBI chrNW_004955456:5,465,180...5,476,380
Ensembl chrNW_004955456:5,465,182...5,474,303 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of ISO (PMID:31776186), (PMID:36841485) UniProt PMID:31776186 PMID:36841485 NCBI chrNW_004955426:20,035,605...20,042,340
Ensembl chrNW_004955426:20,035,605...20,041,974 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of ISO (PMID:31776186), (PMID:36841485) UniProt PMID:31776186 PMID:36841485 NCBI chrNW_004955422:18,079,634...18,146,122
Ensembl chrNW_004955422:18,079,652...18,085,548 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in ISO (PMID:17291760), (PMID:17696610), (PMID:21743440), (PMID:28031483), (PMID:30718482), (PMID:31839538) MGI PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:12091911), (PMID:17696610) MGI PMID:12091911 PMID:17696610 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) UniProt PMID:10728666 NCBI chrNW_004955416:14,814,753...14,899,865
Ensembl chrNW_004955416:14,842,033...14,899,687 		JBrowse link
G Brca1 BRCA1 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528 		JBrowse link
G Brca2 BRCA2 DNA repair associated located_in ISO (PMID:9774970) MGI PMID:9774970 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (PMID:30718482) MGI PMID:30718482 NCBI chrNW_004955413:24,685,311...24,724,269
Ensembl chrNW_004955413:24,684,073...24,724,344 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:19283064) MGI PMID:19283064 NCBI chrNW_004955511:5,705,948...5,724,167
Ensembl chrNW_004955511:5,706,201...5,720,772 		JBrowse link
G Kash5 KASH domain containing 5 located_in ISO (PMID:24062341) MGI PMID:24062341 NCBI chrNW_004955559:1,416,844...1,438,451 JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in ISO (PMID:20551173) MGI PMID:20551173 NCBI chrNW_004955502:5,835,608...6,017,945
Ensembl chrNW_004955502:5,831,658...6,018,521 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (PMID:21743440) MGI PMID:21743440 NCBI chrNW_004955596:455,932...485,853
Ensembl chrNW_004955596:457,835...486,046 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (PMID:9774970)
(PMID:18694567), (PMID:21743440)		 MGI PMID:9774970 PMID:18694567 PMID:21743440 NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:15870106), (PMID:32328639) MGI PMID:15870106 PMID:32328639 NCBI chrNW_004955409:36,223,783...36,231,749
Ensembl chrNW_004955409:36,223,844...36,230,948 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chrNW_004955481:1,304,035...1,361,806 JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004955475:421,472...468,286
Ensembl chrNW_004955475:421,409...468,324 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:15870106), (PMID:22711701) MGI PMID:15870106 PMID:22711701 NCBI chrNW_004955413:29,709,473...29,765,043
Ensembl chrNW_004955413:29,709,473...29,765,043 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in ISO (PMID:15870106), (PMID:22711701), (PMID:32328639) MGI PMID:15870106 PMID:22711701 PMID:32328639 NCBI chrNW_004955485:815,281...848,561 JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:22711701) MGI PMID:22711701 NCBI chrNW_004955573:602,635...631,775
Ensembl chrNW_004955573:602,016...630,936 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)		 UniProt
MGI		 PMID:9933407 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 RGD:11035335 NCBI chrNW_004955528:3,809,438...3,887,055
Ensembl chrNW_004955528:3,809,438...3,886,312 		JBrowse link
G Sycp2l synaptonemal complex protein 2 like located_in ISO (PMID:26362258) MGI PMID:26362258 NCBI chrNW_004955465:3,440,106...3,518,840 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... MGI:1352918 RGD:11035335 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004955423:17,093,573...17,154,910
Ensembl chrNW_004955423:17,093,573...17,154,910 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (MGI:5545848|PMID:24390283)
(PMID:24390283)		 UniProt PMID:24390283 MGI:5545848 NCBI chrNW_004955550:1,108,764...1,138,862
Ensembl chrNW_004955550:1,108,449...1,138,862 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 (inactive) located_in ISO (MGI:2662793|PMID:12764197)
(PMID:12764197)		 UniProt PMID:12764197 MGI:2662793 NCBI chrNW_004955456:14,291,445...14,318,310
Ensembl chrNW_004955456:14,291,260...14,318,310 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004955413:130,214...155,381
Ensembl chrNW_004955413:132,711...152,720 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004955455:4,309,397...4,462,932
Ensembl chrNW_004955455:4,317,319...4,424,645 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (PMID:8622925) MGI PMID:8622925 NCBI chrNW_004955466:5,344,366...5,347,707
Ensembl chrNW_004955466:5,344,366...5,347,707 		JBrowse link
G Incenp inner centromere protein located_in ISO (PMID:12584241) MGI PMID:12584241 NCBI chrNW_004955511:5,705,948...5,724,167
Ensembl chrNW_004955511:5,706,201...5,720,772 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chrNW_004955481:9,696,050...9,716,154
Ensembl chrNW_004955481:9,696,054...9,715,637 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO PMID:16968740
(PMID:15467367), (PMID:16260499)		 MGI PMID:15467367 PMID:16260499 PMID:16968740 RGD:8554354 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (PMID:15467367), (PMID:16260499) MGI PMID:15467367 PMID:16260499 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (PMID:10809667), (PMID:16260499) MGI PMID:10809667 PMID:16260499 NCBI chrNW_004955423:17,093,573...17,154,910
Ensembl chrNW_004955423:17,093,573...17,154,910 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chrNW_004955437:275,976...297,268
Ensembl chrNW_004955437:279,744...297,153 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chrNW_004955451:16,020,101...16,024,063
Ensembl chrNW_004955451:16,020,101...16,024,084 		JBrowse link
G Plk1 polo like kinase 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chrNW_004955493:2,206,353...2,217,231
Ensembl chrNW_004955493:2,206,353...2,217,231 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (PMID:12759374) MGI PMID:12759374 NCBI chrNW_004955409:36,223,783...36,231,749
Ensembl chrNW_004955409:36,223,844...36,230,948 		JBrowse link
G Rnf212 ring finger protein 212 located_in ISO (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283) UniProt PMID:23396135 PMID:24390283 MGI:5487470 MGI:5545848 NCBI chrNW_004955514:525,430...559,037
Ensembl chrNW_004955514:525,085...559,153 		JBrowse link
G Rnf212b ring finger protein 212B located_in ISO (PMID:38865271) UniProt PMID:38865271 NCBI chrNW_004955409:37,041,751...37,095,179 JBrowse link
G Smc1a structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004955475:421,472...468,286
Ensembl chrNW_004955475:421,409...468,324 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (PMID:11564881), (PMID:16968740) MGI PMID:11564881 PMID:16968740 NCBI chrNW_004955413:29,709,473...29,765,043
Ensembl chrNW_004955413:29,709,473...29,765,043 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chrNW_004955485:815,281...848,561 JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:10698974) MGI PMID:10698974 NCBI chrNW_004955573:602,635...631,775
Ensembl chrNW_004955573:602,016...630,936 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO PMID:16968740 MGI PMID:16968740 RGD:8554354 NCBI chrNW_004955507:6,263,070...6,271,289
Ensembl chrNW_004955507:6,264,059...6,271,729 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO PMID:16968740
(PMID:12815066), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
(MGI:3579731|PMID:15937223)		 RGD
MGI
UniProt		 PMID:8660935 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 More... MGI:3579731 RGD:8554354 RGD:9686370 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chrNW_004955528:3,809,438...3,887,055
Ensembl chrNW_004955528:3,809,438...3,886,312 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)		 MGI PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856 		JBrowse link
G Syn1 synapsin I located_in ISO (PMID:14736746) MGI PMID:14736746 NCBI chrNW_004955516:460,258...521,484
Ensembl chrNW_004955516:460,198...521,484 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (MGI:3797180|PMID:18369460) UniProt PMID:18369460 MGI:3797180 NCBI chrNW_004955475:10,057,708...10,432,087 JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) MGI PMID:16968740 NCBI chrNW_004955412:13,829,637...13,834,481
Ensembl chrNW_004955412:13,831,353...13,834,481 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004955573:602,635...631,775
Ensembl chrNW_004955573:602,016...630,936 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701) RGD
MGI		 PMID:1464329 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 RGD:729937 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12741
    cellular anatomical structure 12583
      organelle 10008
        non-membrane-bounded organelle 3706
          intracellular non-membrane-bounded organelle 3706
            chromosome 1051
              nuclear chromosome 191
                condensed nuclear chromosome 73
                  checkpoint clamp complex 3
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 40
Path 2
Term Annotations click to browse term
  cellular_component 12741
    cellular anatomical structure 12583
      organelle 10008
        intracellular organelle 9634
          intracellular membrane-bounded organelle 8694
            nucleus 5255
              nuclear lumen 3568
                nuclear chromosome 191
                  condensed nuclear chromosome 73
                    checkpoint clamp complex 3
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 40
paths to the root