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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


show annotations for term's descendants           Sort by:
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD3 adducin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:106,597,693...106,727,494
Ensembl chr10:110,123,270...110,178,671 		JBrowse link
G AGO3 argonaute RISC catalytic component 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:35,196,371...35,322,220
Ensembl chr 1:36,372,221...36,497,190 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815 		JBrowse link
G BRD4 bromodomain containing 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:14,768,239...14,805,770
Ensembl chr19:15,754,930...15,789,600 		JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 located_in ISO (PMID:24891606) MGI PMID:24891606 NCBI chr14:1,182,025...1,205,471
Ensembl chr14:19,235,987...19,258,663 		JBrowse link
G CDX2 caudal type homeobox 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632 		JBrowse link
G CHEK1 checkpoint kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,446,352...120,478,207
Ensembl chr11:124,359,218...124,390,981 		JBrowse link
G CHMP1A charged multivesicular body protein 1A located_in IEA Ensembl GO_REF:0000107 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:19,433,989...19,485,804
Ensembl chr22:37,253,609...37,305,769 		JBrowse link
G DNMT3L DNA methyltransferase 3 like located_in IEA Ensembl GO_REF:0000107 NCBI chr21:30,503,194...30,520,237
Ensembl chr21:43,798,778...43,814,283 		JBrowse link
G H1-6 H1.6 linker histone, cluster member located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr 6:25,941,055...25,943,565
Ensembl chr 6:26,600,454...26,601,083 		JBrowse link
G HORMAD1 HORMA domain containing 1 located_in ISO (PMID:22164254), (PMID:22530760) MGI PMID:22164254 PMID:22530760 NCBI chr 1:126,054,585...126,077,361
Ensembl chr 1:129,704,451...129,726,691 		JBrowse link
G IHO1 interactor of HORMAD1 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:49,122,120...49,181,228
Ensembl chr 3:50,239,250...50,259,890 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:145,410,755...145,564,248
Ensembl chr 1:149,127,548...149,280,831 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220 		JBrowse link
G LOC100994157 histone H2AX located_in ISO (PMID:20551173), (PMID:22164254), (PMID:22711701), (PMID:23555294), (PMID:26490168) MGI PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 NCBI chr11:113,932,078...113,933,679 JBrowse link
G LRPPRC leucine rich pentatricopeptide repeat containing located_in IEA Ensembl GO_REF:0000107 NCBI chr2A:43,975,949...44,083,846
Ensembl chr2A:44,914,578...45,021,434 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease ISO sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr11:89,418,537...89,500,705
Ensembl chr11:92,918,549...92,985,966 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,011,947...75,130,036
Ensembl chr 1:76,983,852...77,099,896 		JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr12:6,623,568...6,662,741
Ensembl chr12:6,540,750...6,580,206 		JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 located_in ISO (MGI:5644098|PMID:25474630)
(PMID:25474630)		 ComplexPortal PMID:25474630 MGI:5644098 NCBI chr11:129,005,365...129,078,581
Ensembl chr11:132,865,349...132,935,590 		JBrowse link
G NCAPG non-SMC condensin I complex subunit G located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:12,232,614...12,265,320
Ensembl chr 4:17,524,826...17,571,798 		JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:150,441,385...150,513,391
Ensembl chr 7:161,905,762...161,977,093 		JBrowse link
G NCAPH non-SMC condensin I complex subunit H located_in ISO (MGI:5644098|PMID:25474630) ComplexPortal PMID:25474630 MGI:5644098 NCBI chr2A:102,939,357...102,980,091
Ensembl chr2A:97,258,412...97,299,906 		JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,754,994...30,771,103
Ensembl chr22:49,873,223...49,881,027 		JBrowse link
G NEK2 NIMA related kinase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:187,225,947...187,243,605
Ensembl chr 1:192,092,885...192,105,737 		JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 located_in IEA Ensembl GO_REF:0000107 NCBI chr2B:38,524,416...38,534,302
Ensembl chr2B:122,413,494...122,422,953 		JBrowse link
G NOL6 nucleolar protein 6 located_in ISO (MGI:2179879|PMID:11895476) UniProt PMID:11895476 MGI:2179879 NCBI chr 9:33,242,163...33,291,503
Ensembl chr 9:34,053,100...34,100,854 		JBrowse link
G PSMC3IP PSMC3 interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:14,738,205...14,744,215
Ensembl chr17:14,961,602...14,967,639 		JBrowse link
G RAD21 RAD21 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:113,520,456...113,549,339
Ensembl chr 8:116,063,503...116,092,421 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,385,935...1,413,301
Ensembl chr20:1,153,384...1,231,383 		JBrowse link
G RAD50 RAD50 double strand break repair protein located_in ISO
IEA		 sex vesicles/chromatin of XY bivalent RGD
TreeGrafter		 PMID:10855503 GO_REF:0000118 RGD:2300257 NCBI chr 5:127,972,630...128,059,911
Ensembl chr 5:134,134,495...134,222,261 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207 		JBrowse link
G RCC1 regulator of chromosome condensation 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:27,784,488...27,806,728
Ensembl chr 1:28,820,815...28,841,773 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:18283110), (PMID:18316482), (PMID:20551173), (PMID:22164254) MGI PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:62,972,274...62,974,004
Ensembl chr 8:64,638,713...64,639,810 		JBrowse link
G RSPH1 radial spoke head component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:28,779,994...28,804,130
Ensembl chr21:42,098,212...42,121,610 		JBrowse link
G SHOC1 shortage in chiasmata 1 located_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:82,816,269...82,916,515
Ensembl chr 9:110,978,485...111,085,856 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:26,229,904...26,299,559
Ensembl chr22:44,410,118...44,479,513 		JBrowse link
G SMC2 structural maintenance of chromosomes 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949 		JBrowse link
G SMC4 structural maintenance of chromosomes 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:19,649,993...19,671,340
Ensembl chr22:37,466,953...37,487,779 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:18316482), (PMID:21621532), (PMID:22863743), (PMID:24589552), (PMID:24891606) MGI PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
G TEX11 testis expressed 11 located_in ISO (PMID:18316482) MGI PMID:18316482 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:130,667,998...130,729,569
Ensembl chr 3:138,143,893...138,203,363 		JBrowse link
G TTN titin located_in ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr2B:65,783,512...66,064,618 JBrowse link
G TUBG1 tubulin gamma 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,701,795...14,707,404
Ensembl chr17:14,925,451...14,931,340 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C15H14orf39 chromosome 15 C14orf39 homolog located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:41,040,315...41,090,267
Ensembl chr14:59,304,040...59,351,956 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:57,488,790...57,519,552
Ensembl chr11:60,846,199...60,874,540 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (PMID:22164254)
(PMID:15944401), (PMID:22164254)		 MGI
HGNC-UCL		 PMID:15944401 PMID:22164254 MGI:3581466 Ensembl chr10:134,866,705...134,878,566 JBrowse link
G SYCE2 synaptonemal complex central element protein 2 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr19:12,459,646...12,481,833
Ensembl chr19:13,203,595...13,224,052 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:30,797,389...30,809,517
Ensembl chr22:49,908,095...49,913,903 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G TEX11 testis expressed 11 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TEX12 testis expressed 12 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:107,048,417...107,053,655
Ensembl chr11:110,817,016...110,896,829 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HUS1 HUS1 checkpoint clamp component part_of IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:48,606,848...48,622,194
Ensembl chr 7:48,714,668...48,731,005 		JBrowse link
G HUS1B HUS1 checkpoint clamp component B part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 6:466,508...469,590
Ensembl chr 6:601,288...602,124 		JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:75,452,153...75,465,022
Ensembl chr 5:80,732,954...80,744,448 		JBrowse link
G RAD9A RAD9 checkpoint clamp component A part_of IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr11:62,675,480...62,756,886
Ensembl chr11:66,061,208...66,068,214 		JBrowse link
G RAD9B RAD9 checkpoint clamp component B part_of IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr12:108,072,061...108,103,338
Ensembl chr12:111,467,845...111,498,350 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase located_in IEA Ensembl GO_REF:0000107 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864 		JBrowse link
G BRCA1 BRCA1 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815 		JBrowse link
G BRCA2 BRCA2 DNA repair associated located_in IEA Ensembl GO_REF:0000107 NCBI chr13:13,574,422...13,658,967
Ensembl chr13:32,010,066...32,091,332 		JBrowse link
G DMC1 DNA meiotic recombinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:19,433,989...19,485,804
Ensembl chr22:37,253,609...37,305,769 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:57,488,790...57,519,552
Ensembl chr11:60,846,199...60,874,540 		JBrowse link
G KASH5 KASH domain containing 5 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:46,402,586...46,432,002
Ensembl chr19:55,325,640...55,353,721 		JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:75,500,343...75,769,319
Ensembl chr 6:78,783,853...79,047,119 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,385,935...1,413,301
Ensembl chr20:1,153,384...1,231,383 		JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G RPA1 replication protein A1 located_in ISO (PMID:21743440), (PMID:22711701) MGI PMID:21743440 PMID:22711701 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:45,576,100...45,637,314
Ensembl chr  X:53,697,154...53,745,636 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:26,229,904...26,299,559
Ensembl chr22:44,410,118...44,479,513 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:107,164,086...107,201,220
Ensembl chr10:110,613,824...110,653,075 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:56,219,579...56,289,382
Ensembl chr20:57,571,935...57,629,016 		JBrowse link
G SYCP2L synaptonemal complex protein 2 like located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:10,611,051...10,834,913
Ensembl chr 6:10,867,833...10,879,787 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)
(MGI:1352918|PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 UniProt
MGI		 PMID:9933407 PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 More... MGI:1352918 RGD:11035335 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,011,947...75,130,036
Ensembl chr 1:76,983,852...77,099,896 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1IP1 cyclin B1 interacting protein 1 located_in IEA InterPro GO_REF:0000002 NCBI chr14:1,182,025...1,205,471
Ensembl chr14:19,235,987...19,258,663 		JBrowse link
G FAM9A family with sequence similarity 9 member A located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:1,309,417...1,318,806
Ensembl chr  X:8,685,789...8,693,707 		JBrowse link
G FAM9B family with sequence similarity 9 member B located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:1,620,668...1,629,061
Ensembl chr  X:8,910,872...8,920,840 		JBrowse link
G FAM9C family with sequence similarity 9 member C located_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:5,647,848...5,657,551
Ensembl chr  X:12,936,617...12,945,919 		JBrowse link
G FKBP6 FKBP prolyl isomerase family member 6 (inactive) located_in ISO (MGI:2662793|PMID:12764197) UniProt PMID:12764197 MGI:2662793 Ensembl chr 7:80,481,443...80,511,813 JBrowse link
G HORMAD1 HORMA domain containing 1 located_in ISO (PMID:22854038) MGI PMID:22854038 NCBI chr 1:126,054,585...126,077,361
Ensembl chr 1:129,704,451...129,726,691 		JBrowse link
G HORMAD2 HORMA domain containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,113,654...11,213,291
Ensembl chr22:28,920,640...29,015,949 		JBrowse link
G HSPA2 heat shock protein family A (Hsp70) member 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,124,326...45,127,105
Ensembl chr14:63,373,840...63,375,762 		JBrowse link
G INCENP inner centromere protein located_in IEA Ensembl GO_REF:0000107 NCBI chr11:57,488,790...57,519,552
Ensembl chr11:60,846,199...60,874,540 		JBrowse link
G LIG3 DNA ligase 3 located_in ISO (PMID:9001252) MGI PMID:9001252 NCBI chr17:21,776,483...21,805,706
Ensembl chr17:22,074,046...22,095,220 		JBrowse link
G MLH1 mutL homolog 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:36,899,828...36,957,076
Ensembl chr 3:37,189,439...37,245,801 		JBrowse link
G MLH3 mutL homolog 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
G MSH4 mutS homolog 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,011,947...75,130,036
Ensembl chr 1:76,983,852...77,099,896 		JBrowse link
G MSH5 mutS homolog 5 located_in ISO (PMID:16260499) MGI PMID:16260499 NCBI chr 6:31,401,343...31,424,665
Ensembl chr 6:32,290,511...32,311,085 		JBrowse link
G P3H4 prolyl 3-hydroxylase family member 4 (inactive) ISO RGD PMID:1363622 RGD:633987 NCBI chr17:15,500,999...15,511,926 JBrowse link
G PLK1 polo like kinase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,420,972...14,432,821
Ensembl chr16:23,928,773...23,940,779 		JBrowse link
G REC8 REC8 meiotic recombination protein located_in IEA Ensembl GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G RNF212 ring finger protein 212 located_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:1,167,176...1,259,080
Ensembl chr 4:1,102,342...1,146,153 		JBrowse link
G RNF212B ring finger protein 212B located_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr14:4,056,671...4,093,210
Ensembl chr14:22,153,247...22,188,319 		JBrowse link
G SMC1A structural maintenance of chromosomes 1A ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:45,576,100...45,637,314
Ensembl chr  X:53,697,154...53,745,636 		JBrowse link
G SMC1B structural maintenance of chromosomes 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr22:26,229,904...26,299,559
Ensembl chr22:44,410,118...44,479,513 		JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr10:107,164,086...107,201,220
Ensembl chr10:110,613,824...110,653,075 		JBrowse link
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr10:134,866,705...134,878,566 JBrowse link
G SYCE1L synaptonemal complex central element protein 1 like located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:57,774,445...57,789,221
Ensembl chr16:77,120,694...77,135,476 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
InterPro
Ensembl		 PMID:8660935 GO_REF:0000002 GO_REF:0000107 RGD:9686370 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP2 synaptonemal complex protein 2 located_in ISO (PMID:18316482), (PMID:26362258) RGD
MGI		 PMID:9592139 PMID:18316482 PMID:26362258 RGD:69387 NCBI chr20:56,219,579...56,289,382
Ensembl chr20:57,571,935...57,629,016 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
G SYN1 synapsin I located_in ISO (PMID:14736746) MGI PMID:14736746 NCBI chr  X:40,007,777...40,055,801 JBrowse link
G TEX11 testis expressed 11 located_in ISO (MGI:3797180|PMID:18369460) UniProt PMID:18369460 MGI:3797180 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TEX12 testis expressed 12 located_in ISO (PMID:16968740) MGI PMID:16968740 NCBI chr11:107,048,417...107,053,655
Ensembl chr11:110,817,016...110,896,829 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STAG3 STAG3 cohesin complex component located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,215,064...92,249,202
Ensembl chr 7:105,648,425...105,681,850 		JBrowse link
G SYCP1 synaptonemal complex protein 1 located_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:1464329 GO_REF:0000107 GO_REF:0000118 RGD:729937 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) MGI PMID:15870106 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17403
    cellular anatomical entity 17180
      organelle 12682
        non-membrane-bounded organelle 4688
          intracellular non-membrane-bounded organelle 4688
            chromosome 1277
              nuclear chromosome 224
                condensed nuclear chromosome 84
                  checkpoint clamp complex 5
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 44
Path 2
Term Annotations click to browse term
  cellular_component 17403
    cellular anatomical entity 17180
      organelle 12682
        intracellular organelle 12262
          intracellular membrane-bounded organelle 11021
            nucleus 6835
              nuclear lumen 3988
                nuclear chromosome 224
                  condensed nuclear chromosome 84
                    checkpoint clamp complex 5
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 44
paths to the root