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ONTOLOGY REPORT - ANNOTATIONS

Term:condensed nuclear chromosome
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Accession:GO:0000794 term browser browse the term
Definition:A highly compacted molecule of DNA and associated proteins resulting in a cytologically distinct nuclear chromosome.
Comment:Note that this term and its children can be used to annotate gene products that localize to a mitotic chromosome in an organism that undergoes a 'closed mitosis' in which the nuclear envelope does not break down during mitosis and for gene products that localize to a meiotic chromosome.
Synonyms:related_synonym: meiotic chromosome;   nuclear mitotic chromosome


show annotations for term's descendants           Sort by:
condensed nuclear chromosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Add3 adducin 3 located_in ISO (MGI:80989|PMID:1864459) RGD PMID:1864459 MGI:80989 NCBI chr 1:252,147,341...252,255,126
Ensembl chr 1:252,147,386...252,255,124 		JBrowse link
G Ago3 argonaute RISC catalytic component 3 located_in ISO (MGI:5437526|PMID:22863743) RGD PMID:22863743 MGI:5437526 NCBI chr 5:138,632,367...138,714,230
Ensembl chr 5:138,639,569...138,714,230 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (MGI:4457793|PMID:20551173), (MGI:5700253|PMID:26490168) RGD PMID:20551173 PMID:26490168 MGI:4457793 MGI:5700253 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brd4 bromodomain containing 4 located_in ISO (MGI:1888422|PMID:10938129), (MGI:3654777|PMID:16339075), (MGI:3771631|PMID:18039861)
(PMID:10938129)		 RGD PMID:10938129 PMID:16339075 PMID:18039861 MGI:1888422 MGI:3654777 MGI:3771631 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO (MGI:5606256|PMID:24891606) RGD PMID:24891606 MGI:5606256 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Cdx2 caudal type homeo box 2 located_in ISO (MGI:3056244|PMID:15509711) RGD PMID:15509711 MGI:3056244 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Chek1 checkpoint kinase 1 located_in ISO
ISS		 (PMID:9382850)
GO_REF:0000024		 RGD
UniProt		 PMID:9382850 GO_REF:0000024 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chmp1a charged multivesicular body protein 1A located_in ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in
is_active_in		 ISO
IBA		 (MGI:3774244|PMID:18316482), (MGI:3794139|PMID:18283110), (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254), (MGI:5428050|PMID:22711701), (MGI:5586966|PMID:22530760), (MGI:5805564|PMID:27760146)
PMID:21873635		 RGD PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 PMID:22530760 More... MGI:3774244 MGI:3794139 MGI:4457793 MGI:5315075 MGI:5428050 MGI:5586966 MGI:5805564, RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Dnmt3l DNA methyltransferase 3 like located_in ISO
IEA		 (MGI:3623538|PMID:16543361)
GO_REF:0000107		 RGD
Ensembl		 PMID:16543361 GO_REF:0000107 MGI:3623538 NCBI chr20:10,614,933...10,629,337
Ensembl chr20:10,614,934...10,629,516 		JBrowse link
G H1f6 H1.6 linker histone, cluster member located_in ISO (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119 		JBrowse link
G H2ax H2A.X variant histone located_in ISO (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254), (MGI:5428050|PMID:22711701), (MGI:5477835|PMID:23555294), (MGI:5700253|PMID:26490168) RGD PMID:20551173 PMID:22164254 PMID:22711701 PMID:23555294 PMID:26490168 MGI:4457793 MGI:5315075 MGI:5428050 MGI:5477835 MGI:5700253 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (MGI:5315075|PMID:22164254), (MGI:5586966|PMID:22530760) RGD PMID:22164254 PMID:22530760 MGI:5315075 MGI:5586966 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Iho1 interactor of HORMAD1 1 located_in
is_active_in		 ISO
IBA		 (MGI:5822944|PMID:27723721)
PMID:21873635		 RGD PMID:27723721 PMID:21873635 MGI:5822944, RGD:13792537 NCBI chr 8:109,091,134...109,126,386
Ensembl chr 8:109,092,758...109,125,434 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (PMID:16298999) RGD PMID:16298999 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (MGI:85057|PMID:9001252) RGD PMID:9001252 MGI:85057 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12762840)		 HGNC-UCL
Ensembl
RGD		 PMID:12762840 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294
Ensembl chr 6:9,859,867...9,942,293 		JBrowse link
G Mlh1 mutL homolog 1 located_in ISO (MGI:3774244|PMID:18316482), (MGI:5477835|PMID:23555294), (MGI:5606256|PMID:24891606) RGD PMID:18316482 PMID:23555294 PMID:24891606 MGI:3774244 MGI:5477835 MGI:5606256 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:5606256|PMID:24891606) RGD PMID:24891606 MGI:5606256 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IDA sex vesicles/chromatin of XY bivalent RGD PMID:10855503 RGD:2300257 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (MGI:3774244|PMID:18316482), (MGI:5315075|PMID:22164254), (MGI:5477835|PMID:23555294) RGD PMID:18316482 PMID:22164254 PMID:23555294 MGI:3774244 MGI:5315075 MGI:5477835 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 4:157,968,814...157,992,314
Ensembl chr 4:157,968,815...157,992,020 		JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 8:25,437,067...25,506,375
Ensembl chr 8:25,437,123...25,506,373 		JBrowse link
G Ncapg non-SMC condensin I complex, subunit G located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr14:65,403,930...65,432,902
Ensembl chr14:65,404,163...65,432,902 		JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159 		JBrowse link
G Ncaph non-SMC condensin I complex, subunit H located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 3:114,371,937...114,399,178
Ensembl chr 3:114,371,941...114,399,180 		JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 located_in ISO
IEA		 (MGI:5644098|PMID:25474630)
GO_REF:0000107		 RGD
Ensembl		 PMID:25474630 GO_REF:0000107 MGI:5644098 NCBI chr 7:120,422,926...120,439,942
Ensembl chr 7:120,422,956...120,439,938 		JBrowse link
G Nek2 NIMA-related kinase 2 located_in ISO (MGI:3057231|PMID:15479717) RGD PMID:15479717 MGI:3057231 NCBI chr13:103,405,818...103,419,063
Ensembl chr13:103,405,819...103,419,051 		JBrowse link
G Nifk nucleolar protein interacting with the FHA domain of MKI67 located_in ISO
IEA		 (PMID:11342549)
GO_REF:0000107		 RGD
Ensembl		 PMID:11342549 GO_REF:0000107 NCBI chr13:29,393,303...29,403,387
Ensembl chr13:29,393,286...29,405,896 		JBrowse link
G Nol6 nucleolar protein 6 located_in ISO (MGI:2179879|PMID:11895476) RGD PMID:11895476 MGI:2179879 NCBI chr 5:56,259,919...56,270,540
Ensembl chr 5:56,260,830...56,270,336 		JBrowse link
G Psmc3ip PSMC3 interacting protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,024,281...86,027,928
Ensembl chr10:86,023,950...86,027,423 		JBrowse link
G Rad21 RAD21 cohesin complex component located_in ISO (MGI:5575825|PMID:24797475) RGD PMID:24797475 MGI:5575825 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (MGI:5575825|PMID:24797475) RGD PMID:24797475 MGI:5575825 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad50 RAD50 double strand break repair protein is_active_in IDA
IBA		 sex vesicles/chromatin of XY bivalent
PMID:21873635		 RGD
GO_Central		 PMID:10855503 PMID:21873635 RGD:2300257, RGD:13792537 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396 		JBrowse link
G Rad51 RAD51 recombinase located_in
is_active_in		 ISO
IBA		 (MGI:3027988|PMID:14668445), (MGI:3794139|PMID:18283110), (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254), (MGI:5477835|PMID:23555294), (MGI:5586966|PMID:22530760), (MGI:5606256|PMID:24891606), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146)
PMID:21873635		 RGD PMID:14668445 PMID:18283110 PMID:20551173 PMID:22164254 PMID:22530760 More... MGI:3027988 MGI:3794139 MGI:4457793 MGI:5315075 MGI:5477835 MGI:5586966 MGI:5606256 MGI:5700253 MGI:5805564, RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 located_in ISO (PMID:15014043) RGD PMID:15014043 NCBI chr 5:144,526,025...144,544,445
Ensembl chr 5:144,526,025...144,544,577 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (MGI:3771209|PMID:18084284), (MGI:5315075|PMID:22164254), (MGI:5575825|PMID:24797475) RGD PMID:18084284 PMID:22164254 PMID:24797475 MGI:3771209 MGI:5315075 MGI:5575825 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (MGI:3774244|PMID:18316482), (MGI:3794139|PMID:18283110), (MGI:4457793|PMID:20551173), (MGI:5315075|PMID:22164254) RGD PMID:18283110 PMID:18316482 PMID:20551173 PMID:22164254 MGI:3774244 MGI:3794139 MGI:4457793 MGI:5315075 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog located_in ISO (PMID:19465021) RGD PMID:19465021 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
G Rsph1 radial spoke head component 1 located_in ISO (MGI:1203866|PMID:9578619) RGD PMID:9578619 MGI:1203866 NCBI chr20:9,341,910...9,360,640
Ensembl chr20:9,341,913...9,360,640 		JBrowse link
G Shoc1 shortage in chiasmata 1 located_in ISO (MGI:6159552|PMID:29742103) RGD PMID:29742103 MGI:6159552 NCBI chr 5:73,864,423...73,956,487
Ensembl chr 5:73,866,334...73,956,444 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc2 structural maintenance of chromosomes 2 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 5:66,806,882...66,853,478
Ensembl chr 5:66,807,011...66,853,242 		JBrowse link
G Smc4 structural maintenance of chromosomes 4 located_in ISO (MGI:5644098|PMID:25474630) RGD PMID:25474630 MGI:5644098 NCBI chr 2:153,240,243...153,268,722
Ensembl chr 2:153,240,283...153,271,571 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (MGI:5315075|PMID:22164254), (MGI:5575825|PMID:24797475) RGD PMID:22164254 PMID:24797475 MGI:5315075 MGI:5575825 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 located_in ISO (MGI:3708891|PMID:17452644) RGD PMID:17452644 MGI:3708891 NCBI chr 7:111,275,374...111,292,565
Ensembl chr 7:111,275,380...111,292,553 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in ISO (MGI:5437526|PMID:22863743), (MGI:5504589|PMID:22854038), (MGI:5567006|PMID:24589552), (MGI:5606256|PMID:24891606) RGD PMID:22854038 PMID:22863743 PMID:24589552 PMID:24891606 MGI:5437526 MGI:5504589 MGI:5567006 MGI:5606256 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (MGI:3774244|PMID:18316482), (MGI:5285037|PMID:21621532), (MGI:5437526|PMID:22863743), (MGI:5567006|PMID:24589552), (MGI:5606256|PMID:24891606) RGD PMID:18316482 PMID:21621532 PMID:22863743 PMID:24589552 PMID:24891606 MGI:3774244 MGI:5285037 MGI:5437526 MGI:5567006 MGI:5606256 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (MGI:3774244|PMID:18316482) RGD PMID:18316482 MGI:3774244 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 located_in ISO (MGI:3042347|PMID:14718568) RGD PMID:14718568 MGI:3042347 NCBI chr 8:103,887,805...103,931,662
Ensembl chr 8:103,887,865...103,931,674 		JBrowse link
G Ttn titin located_in ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741 		JBrowse link
G Tubg1 tubulin, gamma 1 located_in ISO (MGI:3688382|PMID:15007207) RGD PMID:15007207 MGI:3688382 NCBI chr10:86,052,845...86,059,436
Ensembl chr10:86,052,743...86,059,433 		JBrowse link
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Farsa phenylalanyl-tRNA synthetase subunit alpha is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:23,291,409...23,300,985
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 located_in
is_active_in		 ISO
IBA		 (MGI:5822939|PMID:27796301)
PMID:21873635		 RGD PMID:27796301 PMID:21873635 MGI:5822939, RGD:13792537 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254) RGD PMID:15944401 PMID:22164254 MGI:3581466 MGI:5315075 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in
is_active_in		 ISO
IBA		 (MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635		 RGD PMID:15944401 PMID:22164254 PMID:22854038 PMID:21873635 MGI:3581466 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr19:23,266,236...23,291,265
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in
is_active_in		 ISO
IBA		 (MGI:5008660|PMID:21637789), (MGI:5315075|PMID:22164254)
PMID:21873635		 RGD PMID:21637789 PMID:22164254 PMID:21873635 MGI:5008660 MGI:5315075, RGD:13792537 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
(MGI:2653770|PMID:12584241), (MGI:5470363|PMID:23133398)		 Ensembl
RGD		 PMID:12584241 PMID:23133398 PMID:21873635 GO_REF:0000107 MGI:2653770 MGI:5470363, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Tex11 testis expressed 11 located_in
is_active_in		 ISO
IBA		 (MGI:3774244|PMID:18316482)
PMID:21873635		 RGD PMID:18316482 PMID:21873635 MGI:3774244, RGD:13792537 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in
is_active_in		 ISO
IBA		 (MGI:3664716|PMID:16968740), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635		 RGD PMID:16968740 PMID:22164254 PMID:22854038 PMID:21873635 MGI:3664716 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
checkpoint clamp complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hus1 HUS1 checkpoint clamp component part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B part_of IBA
IEA		 PMID:21873635
GO_REF:0000104		 UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372 		JBrowse link
chiasma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(MGI:3707920|PMID:17291760), (MGI:3719060|PMID:17696610), (MGI:5288570|PMID:21743440), (MGI:5829137|PMID:28031483), (MGI:6277530|PMID:30718482), (MGI:6390726|PMID:31839538)		 Ensembl
RGD		 PMID:17291760 PMID:17696610 PMID:21743440 PMID:28031483 PMID:30718482 More... GO_REF:0000107 MGI:3707920 MGI:3719060 MGI:5288570 MGI:5829137 MGI:6277530 MGI:6390726 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:2183707|PMID:12091911), (MGI:3719060|PMID:17696610) RGD PMID:12091911 PMID:17696610 MGI:2183707 MGI:3719060 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
late recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 located_in IEA
ISO		 GO_REF:0000107
(MGI:5805564|PMID:27760146)		 Ensembl
RGD		 PMID:27760146 GO_REF:0000107 MGI:5805564 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107		 RGD
Ensembl		 PMID:9774970 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO (MGI:6277530|PMID:30718482) RGD PMID:30718482 MGI:6277530 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Kash5 KASH domain containing 5 located_in
is_active_in		 ISO
IBA		 (MGI:5515826|PMID:24062341)
PMID:21873635		 RGD PMID:24062341 PMID:21873635 MGI:5515826, RGD:13792537 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in
is_active_in		 ISO
IBA		 (MGI:4457793|PMID:20551173)
PMID:21873635		 RGD PMID:20551173 PMID:21873635 MGI:4457793, RGD:13792537 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (MGI:5288570|PMID:21743440) RGD PMID:21743440 MGI:5288570 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO (MGI:3813746|PMID:18694567), (MGI:5288570|PMID:21743440)
(PMID:9774970)		 RGD PMID:9774970 PMID:18694567 PMID:21743440 MGI:3813746 MGI:5288570 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (MGI:3578071|PMID:15870106), (MGI:6446339|PMID:32328639) RGD PMID:15870106 PMID:32328639 MGI:3578071 MGI:6446339 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO (MGI:5288570|PMID:21743440), (MGI:5428050|PMID:22711701) RGD PMID:21743440 PMID:22711701 MGI:5288570 MGI:5428050 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701) RGD PMID:15870106 PMID:22711701 MGI:3578071 MGI:5428050 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO		 GO_REF:0000107
(MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701), (MGI:6446339|PMID:32328639)		 Ensembl
RGD		 PMID:15870106 PMID:22711701 PMID:32328639 GO_REF:0000107 MGI:3578071 MGI:5428050 MGI:6446339 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 IDA
IBA
IEA
ISO		 PMID:9933407
PMID:21873635
GO_REF:0000107
(MGI:3794139|PMID:18283110), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398)		 Ensembl
RGD		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 More... GO_REF:0000107 MGI:3794139 MGI:5314623 MGI:5428050 MGI:5470363, RGD:11035335, RGD:13792537 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like located_in
is_active_in		 ISO
IBA		 (MGI:5692009|PMID:26362258)
PMID:21873635		 RGD PMID:26362258 PMID:21873635 MGI:5692009, RGD:13792537 NCBI chr17:23,589,217...23,645,273
Ensembl chr17:23,592,899...23,648,306 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO		 PMID:9933407
(MGI:1352918|PMID:10678170), (MGI:3839184|PMID:19283064), (MGI:4452449|PMID:18802469), (MGI:5049827|PMID:21539824), (MGI:5288570|PMID:21743440), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398), (MGI:5477835|PMID:23555294), (MGI:5504589|PMID:22854038), (MGI:5609844|PMID:25533956), (MGI:5661094|PMID:25675407)		 RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... MGI:1352918 MGI:3839184 MGI:4452449 MGI:5049827 MGI:5288570 MGI:5314623 MGI:5428050 MGI:5470363 MGI:5477835 MGI:5504589 MGI:5609844 MGI:5661094, RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
recombination nodule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh4 mutS homolog 4 located_in ISO (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 colocalizes_with ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Fam9c family with sequence similarity 9, member C is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:146,236,386...146,256,079
Ensembl chr  X:146,236,934...146,256,051 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(MGI:2662793|PMID:12764197)		 UniProt
Ensembl
RGD		 PMID:12764197 GO_REF:0000024 GO_REF:0000107 MGI:2662793 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (MGI:82564|PMID:8622925) RGD PMID:8622925 MGI:82564 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (MGI:85057|PMID:9001252) RGD PMID:9001252 MGI:85057 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G LOC100911002 synaptonemal complex protein 3-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,990,742...151,008,064
Ensembl chr  X:150,990,735...151,003,268 		JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,935,437...150,947,126
Ensembl chr  X:150,935,511...150,946,614 		JBrowse link
G LOC100912196 synaptonemal complex protein 3-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:146,218,106...146,237,824
Ensembl chr  X:146,218,018...146,236,058 		JBrowse link
G Mlh1 mutL homolog 1 located_in IEA
IDA
ISO		 GO_REF:0000107
PMID:16968740
(MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)		 Ensembl
RGD		 PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107 MGI:3056006 MGI:3612193, RGD:8554354 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499) RGD PMID:15467367 PMID:16260499 MGI:3056006 MGI:3612193 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO (MGI:1858570|PMID:10809667), (MGI:3612193|PMID:16260499) RGD PMID:10809667 PMID:16260499 MGI:1858570 MGI:3612193 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (MGI:3612193|PMID:16260499) RGD PMID:16260499 MGI:3612193 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO		 GO_REF:0000107
(MGI:5504589|PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 MGI:5504589 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (MGI:2667549|PMID:12759374) RGD PMID:12759374 MGI:2667549 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G RGD1559891 similar to synaptonemal complex protein 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630 		JBrowse link
G Rnf212 ring finger protein 212 colocalizes_with
is_active_in		 ISO
IBA		 (MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283)
PMID:21873635		 RGD PMID:23396135 PMID:24390283 PMID:21873635 MGI:5487470 MGI:5545848, RGD:13792537 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831 		JBrowse link
G Rnf212b ring finger protein 212B located_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:28,274,629...28,321,093
Ensembl chr15:28,244,083...28,321,347 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:2150452|PMID:11564881), (MGI:3664716|PMID:16968740) RGD PMID:11564881 PMID:16968740 MGI:2150452 MGI:3664716 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in TAS
ISO		 (MGI:1354041|PMID:10698974) RGD PMID:10698974 PMID:11599053 MGI:1354041, RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in		 IDA
IBA		 PMID:16968740
PMID:21873635		 MGI
GO_Central		 PMID:16968740 PMID:21873635 RGD:8554354, RGD:13792537 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
IEA		 (MGI:2664436|PMID:12815066), (MGI:3579731|PMID:15937223), (MGI:3664716|PMID:16968740), (MGI:3719060|PMID:17696610), (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:4457793|PMID:20551173), (MGI:5314623|PMID:22011390), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657), (MGI:6277530|PMID:30718482)
GO_REF:0000002		 RGD
InterPro		 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... GO_REF:0000002 MGI:2664436 MGI:3579731 MGI:3664716 MGI:3719060 MGI:3771519 MGI:3774244 MGI:4457793 MGI:5314623 MGI:5661094 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447 MGI:6277530, RGD:9686370 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
ISO		 (MGI:3774244|PMID:18316482), (MGI:5692009|PMID:26362258) RGD PMID:18316482 PMID:26362258 PMID:9592139 MGI:3774244 MGI:5692009, RGD:69387 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp3 synaptonemal complex protein 3 is_active_in
located_in		 IBA
ISO		 PMID:21873635
(MGI:2664436|PMID:12815066), (MGI:3027482|PMID:14736746), (MGI:3528534|PMID:15657431), (MGI:3615835|PMID:16428451), (MGI:3664716|PMID:16968740), (MGI:3695528|PMID:17141210), (MGI:3719060|PMID:17696610), (MGI:3770581|PMID:17912366), (MGI:3771519|PMID:18070917), (MGI:4457793|PMID:20551173), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657), (MGI:6277530|PMID:30718482), (MGI:6390726|PMID:31839538)
(PMID:9774970)		 RGD PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... MGI:2664436 MGI:3027482 MGI:3528534 MGI:3615835 MGI:3664716 MGI:3695528 MGI:3719060 MGI:3770581 MGI:3771519 MGI:4457793 MGI:5504589 MGI:5509253 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447 MGI:6277530 MGI:6390726, RGD:13792537 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Syn1 synapsin I located_in ISO (MGI:3027482|PMID:14736746) RGD PMID:14736746 MGI:3027482 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Tex11 testis expressed 11 colocalizes_with ISO (MGI:3797180|PMID:18369460) RGD PMID:18369460 MGI:3797180 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (MGI:3664716|PMID:16968740) RGD PMID:16968740 MGI:3664716 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,967,914...150,978,992
Ensembl chr  X:150,967,919...150,978,992 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IDA
IEA
ISO
IBA		 GO_REF:0000107
(MGI:3578071|PMID:15870106), (MGI:3794139|PMID:18283110), (MGI:5049827|PMID:21539824), (MGI:5428050|PMID:22711701)
PMID:21873635		 Ensembl
RGD		 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 More... GO_REF:0000107 MGI:3578071 MGI:3794139 MGI:5049827 MGI:5428050, RGD:729937, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20111
    cellular anatomical entity 19957
      organelle 13362
        non-membrane-bounded organelle 5117
          intracellular non-membrane-bounded organelle 5116
            chromosome 1333
              nuclear chromosome 231
                condensed nuclear chromosome 88
                  checkpoint clamp complex 4
                  chiasma 2
                  meiotic recombination initiation complex 0
                  pairing center 0
                  recombination nodule + 2
                  synapsis initiation complex 0
                  synaptonemal structure + 49
Path 2
Term Annotations click to browse term
  cellular_component 20111
    cellular anatomical entity 19957
      organelle 13362
        intracellular organelle 12981
          intracellular membrane-bounded organelle 11370
            nucleus 7053
              nuclear lumen 4016
                nuclear chromosome 231
                  condensed nuclear chromosome 88
                    checkpoint clamp complex 4
                    chiasma 2
                    meiotic recombination initiation complex 0
                    pairing center 0
                    recombination nodule + 2
                    synapsis initiation complex 0
                    synaptonemal structure + 49
paths to the root