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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosome
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Accession:GO:0000786 term browser browse the term
Definition:A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Synonyms:narrow_synonym: cytoplasmic nucleosome;   nuclear nucleosome
 alt_id: GO:0000787;   GO:0000788;   GO:0005718
 xref: Wikipedia:Nucleosome



show annotations for term's descendants           Sort by:
nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040686.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:100,270,675...100,270,878 JBrowse link
G AABR07044065.1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr19:50,114,362...50,114,880 JBrowse link
G Actb actin, beta located_in
part_of
ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Actl6a actin-like 6A located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Brd8 bromodomain containing 8 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr18:26,204,892...26,229,999
Ensembl chr18:26,181,732...26,229,884
JBrowse link
G Cenpa centromere protein A part_of ISO (PMID:27499292) RGD PMID:27499292 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G ENSRNOG00000062927 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 2:183,779,559...183,809,469 JBrowse link
G ENSRNOG00000064540 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:42,750,594...42,753,070 JBrowse link
G ENSRNOG00000066901 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:42,425,861...42,486,187 JBrowse link
G ENSRNOG00000068034 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:42,760,219...42,793,359 JBrowse link
G ENSRNOG00000068602 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr17:42,718,263...42,722,997 JBrowse link
G ENSRNOG00000070346 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr17:42,800,827...42,801,750 JBrowse link
G Ep400 E1A binding protein p400 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861
JBrowse link
G Epc1 enhancer of polycomb homolog 1 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr17:54,503,358...54,594,444
Ensembl chr17:54,503,358...54,594,425
JBrowse link
G Epc2 enhancer of polycomb homolog 2 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 3:33,867,219...33,967,908
Ensembl chr 3:33,867,219...33,967,150
JBrowse link
G Glyr1 glyoxylate reductase 1 homolog part_of ISO
IEA
ISS
(PMID:23260659)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23260659 GO_REF:0000024 GO_REF:0000107 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637
JBrowse link
G H1f0 H1.0 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:110,592,834...110,594,694
Ensembl chr 7:110,592,208...110,594,694
JBrowse link
G H1f1 H1.1 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,366,268...41,367,011
Ensembl chr17:41,366,268...41,367,011
JBrowse link
G H1f10 H1.10 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,440,515...120,441,578
Ensembl chr 4:120,440,870...120,441,448
JBrowse link
G H1f2 H1.2 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,391,106...41,392,597
Ensembl chr17:41,388,477...41,392,635
JBrowse link
G H1f4 H1.4 linker histone, cluster member part_of IDA PMID:9109385 CAFA PMID:9109385 RGD:12793017 NCBI chr17:41,486,574...41,487,355
Ensembl chr17:41,486,560...41,487,403
JBrowse link
G H1f5 H1.5 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:42,726,132...42,727,162
Ensembl chr17:42,726,127...42,769,160
JBrowse link
G H1f6 H1.6 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,427,365...41,428,109
Ensembl chr17:41,427,323...41,428,119
JBrowse link
G H1f8 H1.8 linker histone part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:148,993,133...148,998,254
Ensembl chr 4:148,993,133...148,998,254
JBrowse link
G H2ab3 H2A.B variant histone 3 part_of ISO
IBA
(PMID:22795134)
GO_REF:0000033
RGD
GO_Central
PMID:22795134 GO_REF:0000033 NCBI chr  X:82,362,531...82,363,105
Ensembl chr  X:82,362,633...82,362,983
JBrowse link
G H2ac1 H2A clustered histone 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,171,324...41,171,801
Ensembl chr17:41,135,489...41,172,022
JBrowse link
G H2ac10 H2A clustered histone 10 part_of IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000043 NCBI chr17:41,570,532...41,571,020
Ensembl chr17:41,570,273...41,571,049
JBrowse link
G H2ac12 H2A clustered histone 12 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,486,415...42,486,880
Ensembl chr17:42,486,415...42,486,941
JBrowse link
G H2ac18 H2A clustered histone 18 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,808,398...183,808,992 JBrowse link
G H2ac20 H2A clustered histone 20 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,779,879...183,780,357 JBrowse link
G H2ac21 H2A clustered histone 21 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,779,355...183,779,788 JBrowse link
G H2ac23 H2A clustered histone 23 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,532,685...41,533,271
Ensembl chr17:42,478,860...42,479,252
Ensembl chr17:42,478,860...42,479,252
JBrowse link
G H2ac25 H2A clustered histone 25 part_of ISO
IBA
(PMID:22334663)
GO_REF:0000033
RGD
GO_Central
PMID:22334663 GO_REF:0000033 NCBI chr10:43,733,702...43,735,254
Ensembl chr10:43,733,668...43,744,874
JBrowse link
G H2ac4 H2A clustered histone 4 located_in
part_of
ISO
IBA
(PMID:20498094), (PMID:21812398), (PMID:26694698)
GO_REF:0000033
RGD
GO_Central
PMID:20498094 PMID:21812398 PMID:26694698 GO_REF:0000033 NCBI chr17:42,799,884...42,800,387
Ensembl chr17:42,799,652...42,800,381
JBrowse link
G H2aj H2A.J histone part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:169,675,718...169,676,202
Ensembl chr 4:169,675,752...169,677,006
JBrowse link
G H2ax H2A.X variant histone part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G H2az1 H2A.Z variant histone 1 part_of
located_in
IEA
IBA
ISO
GO_REF:0000043
GO_REF:0000033
(PMID:24311584)
UniProt
GO_Central
RGD
PMID:24311584 GO_REF:0000033 GO_REF:0000043 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485
JBrowse link
G H2az1-ps2 H2A.Z variant histone 1, pseudogene 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:6,362,973...6,363,359
Ensembl chr 6:6,362,988...6,363,359
JBrowse link
G H2az2 H2A.Z variant histone 2 located_in
part_of
ISO
IBA
(PMID:24311584)
GO_REF:0000033
RGD
GO_Central
PMID:24311584 GO_REF:0000033 NCBI chr14:81,293,304...81,312,209
Ensembl chr14:81,293,299...81,312,144
JBrowse link
G H2az2l1 H2A.Z histone variant 2 like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:151,152,904...151,153,567
Ensembl chr 4:151,153,132...151,153,518
JBrowse link
G H2az2l2 H2A.Z histone variant 2 like 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:84,321,801...84,322,513
Ensembl chr 6:84,321,903...84,322,289
JBrowse link
G H2az2l3 H2A.Z histone variant 2 like 3 part_of IEA
IBA
GO_REF:0000043
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000043 NCBI chr18:80,609,863...80,610,522
Ensembl chr18:80,609,861...80,610,556
JBrowse link
G H2bc1 H2B clustered histone 1 part_of ISS
ISO
IEA
GO_REF:0000024
(PMID:24699735)
(MGI:3702345|PMID:17261847), (MGI:5502464|PMID:23884607), (MGI:5897488|PMID:28366643)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17261847 PMID:23884607 PMID:24699735 PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:3702345 MGI:5502464 MGI:5897488 NCBI chr17:41,172,041...41,172,510
Ensembl chr17:41,171,903...41,176,782
Ensembl chr17:41,171,903...41,176,782
JBrowse link
G H2bc12l1 H2B clustered histone 12 like 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,562,540...41,562,985
Ensembl chr17:41,562,508...41,562,963
JBrowse link
G H2bc18 H2B clustered histone 18 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:183,838,331...183,842,769
Ensembl chr 2:183,838,334...183,841,529
JBrowse link
G H2bc6 H2B clustered histone 6 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,520,775...41,521,238 JBrowse link
G H2bcl1 H2B clustered histone like 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,752,471...42,752,941
Ensembl chr17:41,571,210...41,571,896
Ensembl chr17:41,571,210...41,571,896
Ensembl chr17:41,571,210...41,571,896
JBrowse link
G H2bcl2 H2B clustered histone like 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,534,048...41,534,478 JBrowse link
G H2bl1 H2B.L histone variant 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:30,387,109...30,387,584
Ensembl chr 2:30,386,982...30,387,633
JBrowse link
G H2bu1 H2B.U histone 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:43,732,737...43,733,484
Ensembl chr10:43,732,864...43,736,277
JBrowse link
G H3c1 H3 clustered histone 1 part_of
located_in
IEA
ISO
GO_REF:0000043
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412), (PMID:30867594)
(PMID:21812398), (PMID:24311584)
UniProt
RGD
PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000043 NCBI chr17:41,368,379...41,368,902
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
Ensembl chr17:41,368,386...41,368,856
JBrowse link
G H3c13 H3 clustered histone 13 part_of
located_in
ISO (PMID:21636898), (PMID:25615412)
(PMID:26694698)
RGD PMID:21636898 PMID:25615412 PMID:26694698 NCBI chr17:41,531,502...41,531,971
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr17:183,795,504...183,809,469
Ensembl chr 2:183,795,504...183,809,469
JBrowse link
G H3cl H3 clustered histone like part_of ISO (PMID:20819935), (PMID:27016736) RGD PMID:20819935 PMID:27016736 NCBI chr17:41,372,194...41,378,877 JBrowse link
G H3f3a H3.3 histone A part_of ISO (PMID:14718166), (PMID:19633671), (PMID:21636898), (PMID:25615412) RGD PMID:14718166 PMID:19633671 PMID:21636898 PMID:25615412 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3a-ps3 H3.3 histone A, pseudogene 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:11,421,502...11,422,456
Ensembl chr 6:11,421,375...11,422,460
Ensembl chr 6:11,421,375...11,422,460
JBrowse link
G H3f3a-ps9 H3.3 histone A, pseudogene 9 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:52,647,250...52,648,006
Ensembl chr11:52,647,167...52,648,022
JBrowse link
G H3f3al3 H3.3 histone A like 3 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:42,494,007...42,495,112
Ensembl chr 9:42,494,353...42,494,763
JBrowse link
G H3f3b H3.3 histone B part_of ISO (PMID:14718166), (PMID:19633671), (PMID:21636898), (PMID:25615412) RGD PMID:14718166 PMID:19633671 PMID:21636898 PMID:25615412 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G H3f3bl1 H3.3 histone B like 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:102,494,861...102,508,874
Ensembl chr13:102,496,461...102,508,842
JBrowse link
G H3f3bl2 H3.3 histone B like 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:206,954,890...206,955,445
Ensembl chr 1:206,954,655...206,955,444
JBrowse link
G H3f3c H3 histone, family 3C part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:86,501,085...86,502,124
Ensembl chr 7:86,501,071...86,502,140
JBrowse link
G H3f3l1 H3.3 histone like 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:58,099,930...58,101,667
Ensembl chr 7:86,501,071...86,502,140
JBrowse link
G H3f4 H3.4 histone, cluster member part_of
located_in
ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094 PMID:25615412 NCBI chr10:43,740,702...43,741,262 JBrowse link
G H4c14 H4 clustered histone 14 located_in
part_of
ISO (PMID:20498094), (PMID:21812398), (PMID:24311584), (PMID:26694698)
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G H4cl1 histone H4C like 1 located_in
part_of
ISO (PMID:20498094), (PMID:21812398), (PMID:24311584), (PMID:26694698)
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... NCBI chr17:41,368,743...41,426,735 JBrowse link
G H4f3 H1.3 linker histone, cluster member part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:41,551,524...41,552,303
Ensembl chr17:41,529,667...41,552,334
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 part_of ISO (PMID:12920187) RGD PMID:12920187 NCBI chr10:79,913,525...79,914,321
Ensembl chr10:79,913,480...79,914,321
JBrowse link
G Hist1h2ac histone cluster 1 H2A family member C part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,478,836...42,479,306
Ensembl chr17:42,478,860...42,479,252
Ensembl chr17:42,478,860...42,479,252
JBrowse link
G Hist1h2af histone cluster 1 H2A family member F located_in
part_of
ISO
IBA
(PMID:20498094), (PMID:21812398), (PMID:26694698)
GO_REF:0000033
RGD
GO_Central
PMID:20498094 PMID:21812398 PMID:26694698 GO_REF:0000033 NCBI chr17:41,379,404...41,379,796
Ensembl chr17:41,379,404...41,379,796
JBrowse link
G Hist1h2ah histone cluster 1 H2A family member H part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,384,521...41,385,018 JBrowse link
G Hist1h2ai histone cluster 1, H2ai part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,718,310...42,718,797
Ensembl chr17:41,534,691...41,539,869
Ensembl chr17:41,534,691...41,539,869
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 part_of
located_in
IEA
ISO
GO_REF:0000043
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412), (PMID:30867594)
(PMID:21812398), (PMID:24311584)
UniProt
RGD
PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... GO_REF:0000043 NCBI chr17:41,568,181...41,569,093
Ensembl chr17:41,568,471...41,569,109
JBrowse link
G hist1h2ail2 histone cluster 1, H2ai-like2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,753,160...42,753,620
Ensembl chr17:41,534,691...41,539,869
Ensembl chr17:41,534,691...41,539,869
JBrowse link
G Hist1h2al1 histone cluster 1 H2A family like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,707,954...42,708,420 JBrowse link
G Hist1h2an histone cluster 1, H2an part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,534,653...41,535,259
Ensembl chr17:41,534,691...41,539,869
JBrowse link
G Hist1h2anl2 histone cluster 1, H2an like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:42,696,845...42,697,423
Ensembl chr17:42,696,791...42,697,295
JBrowse link
G Hist1h2bc histone cluster 1, H2bc part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,692,335...42,696,601
Ensembl chr17:42,694,723...42,696,642
JBrowse link
G Hist1h2bg histone cluster 1, H2bg part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,571,234...41,572,202
Ensembl chr17:41,571,210...41,571,896
JBrowse link
G Hist1h2bo histone cluster 1 H2B family member O part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,716,433...42,718,046
Ensembl chr17:42,673,067...42,718,095
Ensembl chr17:42,673,067...42,718,095
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:41,432,100...41,441,487
Ensembl chr17:41,429,164...41,442,153
JBrowse link
G Hist1h3b histone cluster 1, H3b part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:42,723,453...42,723,925
Ensembl chr17:42,723,450...42,723,911
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B located_in
part_of
ISO (PMID:20498094), (PMID:21812398), (PMID:24311584), (PMID:26694698)
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m located_in
part_of
ISO (PMID:20498094), (PMID:21812398), (PMID:24311584), (PMID:26694698)
(PMID:14718166), (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:14718166 PMID:20498094 PMID:21636898 PMID:21812398 PMID:24311584 More... NCBI chr17:42,698,016...42,698,420
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h2aa2 histone cluster 2 H2A family member A2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:183,801,308...183,801,891 JBrowse link
G Hist2h2be histone cluster 2 H2B family member E located_in ISO (PMID:20498094), (PMID:21812398), (PMID:24311584), (PMID:26694698) RGD PMID:20498094 PMID:21812398 PMID:24311584 PMID:26694698 NCBI chr 2:183,780,583...183,783,030 JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 part_of
located_in
ISO (PMID:21636898), (PMID:25615412)
(PMID:26694698)
RGD PMID:21636898 PMID:25615412 PMID:26694698 NCBI chr 2:183,837,296...183,837,721
Ensembl chr 2:183,837,303...183,837,752
JBrowse link
G Hist3h2ba histone cluster 3, H2ba part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:43,725,836...43,726,465
Ensembl chr10:43,724,930...43,727,107
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,435,781...150,463,004
Ensembl chr 5:150,433,740...150,463,000
JBrowse link
G Ing3 inhibitor of growth family, member 3 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715
JBrowse link
G Irf4 interferon regulatory factor 4 part_of ISO (MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:3615721 NCBI chr17:33,721,800...33,742,570
Ensembl chr17:33,721,811...33,740,070
JBrowse link
G Kat5 lysine acetyltransferase 5 located_in
part_of
ISO
IEA
(PMID:27153538)
GO_REF:0000107
RGD
Ensembl
PMID:27153538 GO_REF:0000107 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Kat6a lysine acetyltransferase 6A part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
JBrowse link
G Kat6b lysine acetyltransferase 6B part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
JBrowse link
G Kdm1b lysine demethylase 1B part_of ISO (PMID:23260659) RGD PMID:23260659 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Macroh2a1 macroH2A.1 histone part_of IDA
IBA
IEA
GO_REF:0000033
GO_REF:0000043
GO_REF:0000104
GO_Central
UniProt
RGD
PMID:1529340 GO_REF:0000033 GO_REF:0000043 GO_REF:0000104, RGD:728409 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Mbtd1 mbt domain containing 1 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr10:78,839,140...78,895,413
Ensembl chr10:78,839,036...78,893,720
JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 5:137,344,681...137,369,703
Ensembl chr 5:137,344,380...137,370,014
JBrowse link
G Morf4l1 mortality factor 4 like 1 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519
JBrowse link
G Morf4l2 mortality factor 4 like 2 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr  X:100,082,562...100,093,658
Ensembl chr  X:100,082,404...100,093,728
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 part_of ISO
ISS
(PMID:20871592)
GO_REF:0000024
RGD
UniProt
PMID:20871592 GO_REF:0000024 NCBI chr15:30,800,546...30,828,415
Ensembl chr15:30,686,613...30,828,810
JBrowse link
G Mrgbp MRG domain binding protein located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 3:167,697,129...167,700,592
Ensembl chr 3:167,697,185...167,700,592
JBrowse link
G Prm1 protamine 1 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,871,817...4,872,312 JBrowse link
G Prm2 protamine 2 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,876,285...4,877,026
Ensembl chr10:4,873,372...4,877,026
JBrowse link
G Prm3 protamine 3 part_of IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,877,471...4,877,985
Ensembl chr10:4,877,471...4,877,985
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,528,827...5,602,537
Ensembl chr 1:5,528,888...5,602,527
JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 part_of ISO (MGI:3528541|PMID:15632077) RGD PMID:15632077 MGI:3528541 NCBI chr 2:6,767,015...6,874,428
Ensembl chr 2:6,767,015...6,867,149
JBrowse link
G Sphk2 sphingosine kinase 2 part_of ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391
JBrowse link
G Tcf3 transcription factor 3 part_of ISO (MGI:3615721|PMID:16428437) RGD PMID:16428437 MGI:3615721 NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314
JBrowse link
G Tgm2 transglutaminase 2 part_of ISO
IEA
(PMID:30867594), (PMID:32273471)
GO_REF:0000107
RGD
Ensembl
PMID:30867594 PMID:32273471 GO_REF:0000107 NCBI chr 3:146,772,684...146,801,924
Ensembl chr 3:146,772,687...146,801,981
JBrowse link
G Tnp1 transition protein 1 part_of ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:12743712)
(MGI:5897488|PMID:28366643)
GO_REF:0000043
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:12743712 PMID:28366643 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 MGI:5897488 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274
JBrowse link
G Tnp2 transition protein 2 part_of ISS
ISO
IEA
GO_REF:0000024
(MGI:5897488|PMID:28366643)
GO_REF:0000043
UniProt
RGD
PMID:28366643 GO_REF:0000024 GO_REF:0000043 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538
JBrowse link
G Trrap transformation/transcription domain-associated protein located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
JBrowse link
G Yeats4 YEATS domain containing 4 located_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr 7:52,858,313...52,865,454
Ensembl chr 7:52,858,305...52,865,635
JBrowse link
CENP-A containing nucleosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpa centromere protein A located_in
part_of
ISO (PMID:21743476)
(PMID:18195732)
RGD PMID:18195732 PMID:21743476 NCBI chr 6:25,700,142...25,711,767
Ensembl chr 6:25,700,142...25,711,675
JBrowse link
G H2ac4 H2A clustered histone 4 located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:42,799,884...42,800,387
Ensembl chr17:42,799,652...42,800,381
JBrowse link
G H4c14 H4 clustered histone 14 located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr 2:183,831,601...183,831,996
Ensembl chr 2:183,825,994...183,832,048
JBrowse link
G H4cl1 histone H4C like 1 located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:41,368,743...41,426,735 JBrowse link
G Hist1h2af histone cluster 1 H2A family member F located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:41,379,404...41,379,796
Ensembl chr17:41,379,404...41,379,796
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:42,480,467...42,484,912
Ensembl chr17:42,480,313...42,485,370
JBrowse link
G Hist1h4m histone cluster 1, H4m located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr17:42,698,016...42,698,420
Ensembl chr17:42,698,025...42,698,958
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E located_in ISO (PMID:21743476) RGD PMID:21743476 NCBI chr 2:183,780,583...183,783,030 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21257
    protein-containing complex 6913
      protein-DNA complex 908
        nucleosome 118
          CENP-A containing nucleosome 8
          histone H3-containing nucleosome 0
Path 2
Term Annotations click to browse term
  cellular_component 21257
    cellular anatomical entity 21101
      organelle 14227
        non-membrane-bounded organelle 5315
          intracellular non-membrane-bounded organelle 5313
            chromosome 1387
              chromatin 818
                nucleosome 118
                  CENP-A containing nucleosome 8
                  histone H3-containing nucleosome 0
paths to the root