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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin
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Accession:GO:0000785 term browser browse the term
Definition:The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
Comment:Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore.
Synonyms:related_synonym: chromosome scaffold
 alt_id: GO:0005717
 xref: NIF_Subcellular:sao1615953555


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chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD17 ankyrin repeat domain 17 JBrowse link 13 61,892,872 62,046,625 RGD:13508589
G CAPN2 calpain 2 JBrowse link 7 40,333,379 40,367,158 RGD:13508589
G CHEK1 checkpoint kinase 1 JBrowse link 5 8,878,511 8,910,626 RGD:13508589
G CHMP2A charged multivesicular body protein 2A JBrowse link 1 99,405,322 99,408,257 RGD:13508589
G CHMP7 charged multivesicular body protein 7 JBrowse link 25 34,242,671 34,257,268 RGD:13508589
G COPS5 COP9 signalosome subunit 5 JBrowse link 29 16,562,234 16,579,082 RGD:13508589
G DSCC1 DNA replication and sister chromatid cohesion 1 JBrowse link 13 18,825,522 18,841,905 RGD:13508589
G ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1 JBrowse link 7 66,429,492 66,502,232 RGD:13508589
G FANK1 fibronectin type III and ankyrin repeat domains 1 JBrowse link 28 35,042,045 35,152,282 RGD:13508589
G FBH1 F-box DNA helicase 1 JBrowse link 2 30,047,994 30,095,761 RGD:13508589
G HLCS holocarboxylase synthetase JBrowse link 31 31,934,796 32,159,866 RGD:13508589
G HMGN1 high mobility group nucleosome binding domain 1 JBrowse link 31 34,275,400 34,283,373 RGD:13508589
G HMGN2 high mobility group nucleosomal binding domain 2 JBrowse link 2 73,579,042 73,582,786 RGD:13508589
G HMGN3 high mobility group nucleosomal binding domain 3 JBrowse link 12 40,135,984 40,168,281 RGD:13508589
G HR HR lysine demethylase and nuclear receptor corepressor JBrowse link 25 35,120,566 35,136,560 RGD:13508589
G HTRA2 HtrA serine peptidase 2 JBrowse link 17 48,610,408 48,613,399 RGD:13508589
G IST1 IST1 factor associated with ESCRT-III JBrowse link 5 77,660,033 77,693,831 RGD:13508589
G JMJD1C jumonji domain containing 1C JBrowse link 4 15,006,670 15,261,139 RGD:13508589
G KDM3A lysine demethylase 3A JBrowse link 17 38,690,962 38,744,507 RGD:13508589
G KDM3B lysine demethylase 3B JBrowse link 11 25,954,352 26,024,919 RGD:13508589
G KIF22 kinesin family member 22 JBrowse link 6 17,853,190 17,865,386 RGD:13508589
G LOC102156180 cohesin subunit SA-2-like JBrowse link X 276,809 321,955 RGD:13508589
G LOXL2 lysyl oxidase like 2 JBrowse link 25 34,095,858 34,186,775 RGD:13508589
G MAEL maelstrom spermatogenic transposon silencer JBrowse link 7 31,364,111 31,394,675 RGD:13508589
G MAU2 MAU2 sister chromatid cohesion factor JBrowse link 20 43,863,996 43,891,442 RGD:13508589
G MBD4 methyl-CpG binding domain 4, DNA glycosylase JBrowse link 20 5,716,162 5,725,068 RGD:13508589
G MCM2 minichromosome maintenance complex component 2 JBrowse link 20 1,682,928 1,702,689 RGD:13508589
G MECP2 methyl-CpG binding protein 2 JBrowse link X 121,866,721 121,876,088 RGD:13508589
G MEN1 menin 1 JBrowse link 18 52,346,747 52,352,884 RGD:13508589
G MIS18A MIS18 kinetochore protein A JBrowse link 31 27,025,657 27,039,001 RGD:13508589
G MTBP MDM2 binding protein JBrowse link 13 19,313,884 19,385,370 RGD:13508589
G NEDD4 NEDD4 E3 ubiquitin protein ligase JBrowse link 30 21,123,333 21,229,907 RGD:13508589
G NFE2L2 nuclear factor, erythroid 2 like 2 JBrowse link 36 20,989,205 21,087,044 RGD:13508589
G NIPBL NIPBL cohesin loading factor JBrowse link 4 71,583,118 71,780,986 RGD:13508589
G NSD1 nuclear receptor binding SET domain protein 1 JBrowse link 4 36,058,351 36,214,254 RGD:13508589
G NSD2 nuclear receptor binding SET domain protein 2 JBrowse link 3 62,164,888 62,228,006 RGD:13508589
G NSD3 nuclear receptor binding SET domain protein 3 JBrowse link 16 27,106,348 27,225,049 RGD:13508589
G OBI1 ORC ubiquitin ligase 1 JBrowse link 22 32,006,441 32,047,609 RGD:13508589
G OIP5 Opa interacting protein 5 JBrowse link 30 8,377,407 8,396,222 RGD:13508589
G ORC3 origin recognition complex subunit 3 JBrowse link 12 47,047,341 47,108,126 RGD:13508589
G ORC5 origin recognition complex subunit 5 JBrowse link 18 16,088,143 16,183,813 RGD:13508589
G PCNA proliferating cell nuclear antigen JBrowse link 24 16,478,774 16,485,992 RGD:13508589
G PDS5A PDS5 cohesin associated factor A JBrowse link 3 72,521,839 72,673,164 RGD:13508589
G PDS5B PDS5 cohesin associated factor B JBrowse link 25 7,407,533 7,587,177 RGD:13508589
G PLK1 polo like kinase 1 JBrowse link 6 22,165,338 22,176,847 RGD:13508589
G PPP1R10 protein phosphatase 1 regulatory subunit 10 JBrowse link 12 416,533 434,777 RGD:13508589
G RAD21 RAD21 cohesin complex component JBrowse link 13 16,337,563 16,368,041 RGD:13508589
G RAN RAN, member RAS oncogene family JBrowse link 26 1,435,077 1,436,893 RGD:13508589
G RB1 RB transcriptional corepressor 1 JBrowse link 22 3,061,621 3,204,625 RGD:13508589
G RBL1 RB transcriptional corepressor like 1 JBrowse link 24 25,698,313 25,757,358 RGD:13508589
G RBL2 RB transcriptional corepressor like 2 JBrowse link 2 62,263,974 62,315,371 RGD:13508589
G SFPQ splicing factor proline and glutamine rich JBrowse link 15 6,879,955 6,896,309 RGD:13508589
G SIN3A SIN3 transcription regulator family member A JBrowse link 30 38,231,844 38,306,665 RGD:13508589
G SLF2 SMC5-SMC6 complex localization factor 2 JBrowse link 28 13,595,194 13,656,644 RGD:13508589
G SMCR8 SMCR8-C9orf72 complex subunit RGD:13508589
G STAG1 stromal antigen 1 JBrowse link 23 32,786,730 33,126,526 RGD:13508589
G STAG2 stromal antigen 2 JBrowse link X 95,397,174 95,532,716 RGD:13508589
G STAG3 stromal antigen 3 JBrowse link 6 9,326,402 9,354,049 RGD:13508589
G SUV39H2 suppressor of variegation 3-9 homolog 2 JBrowse link 2 21,715,677 21,749,732 RGD:13508589
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 JBrowse link 12 11,167,286 11,296,817 RGD:13508589
G UPF1 UPF1 RNA helicase and ATPase JBrowse link 20 44,234,411 44,271,129 RGD:13508589
G UXT ubiquitously expressed prefoldin like chaperone JBrowse link X 41,271,908 41,280,433 RGD:13508589
G WAPL WAPL cohesin release factor JBrowse link 4 34,219,644 34,297,456 RGD:13508589
G WDR43 WD repeat domain 43 JBrowse link 17 22,769,281 22,813,559 RGD:13508589
G WDR82 WD repeat domain 82 JBrowse link 20 37,494,633 37,513,746 RGD:13508589
ASTRA complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TELO2 telomere maintenance 2 JBrowse link 6 39,309,224 39,320,215 RGD:13508589
G TTI1 TELO2 interacting protein 1 JBrowse link 24 26,505,913 26,552,418 RGD:13508589
G TTI2 TELO2 interacting protein 2 JBrowse link 16 31,160,666 31,169,576 RGD:13508589
brahma complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ARID1A AT-rich interaction domain 1A JBrowse link 2 73,331,606 73,401,151 RGD:13508589
G ARID1B AT-rich interaction domain 1B JBrowse link 1 46,370,621 46,800,531 RGD:13508589
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 26 28,692,610 28,728,778 RGD:13508589
CERF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CECR2 CECR2 histone acetyl-lysine reader JBrowse link 27 45,125,909 45,193,577 RGD:13508589
CHRAC term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAZ1A bromodomain adjacent to zinc finger domain 1A JBrowse link 8 13,604,694 13,694,508 RGD:13508589
G CHRAC1 chromatin accessibility complex subunit 1 JBrowse link 13 35,162,189 35,164,286 RGD:13508589
G POLE3 DNA polymerase epsilon 3, accessory subunit JBrowse link 11 67,757,779 67,760,417 RGD:13508589
euchromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANKRD2 ankyrin repeat domain 2 JBrowse link 28 10,838,677 10,848,406 RGD:13508589
G CBX2 chromobox 2 JBrowse link 9 1,847,867 1,855,923 RGD:13508589
G DNMT3A DNA methyltransferase 3 alpha JBrowse link 17 19,489,524 19,563,074 RGD:13508589
G RNF2 ring finger protein 2 JBrowse link 7 18,240,672 18,283,091 RGD:13508589
G RRP1B ribosomal RNA processing 1B JBrowse link 31 37,652,584 37,670,396 RGD:13508589
heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CBX2 chromobox 2 JBrowse link 9 1,847,867 1,855,923 RGD:13508589
G HDAC1 histone deacetylase 1 JBrowse link 2 68,901,339 68,936,473 RGD:13508589
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 1 21,232,260 21,283,687 RGD:13508589
G MECP2 methyl-CpG binding protein 2 JBrowse link X 121,866,721 121,876,088 RGD:13508589
G MORC2 MORC family CW-type zinc finger 2 JBrowse link 26 23,951,704 23,993,620 RGD:13508589
G PHC2 polyhomeotic homolog 2 JBrowse link 2 67,993,587 68,115,307 RGD:13508589
G RRP1B ribosomal RNA processing 1B JBrowse link 31 37,652,584 37,670,396 RGD:13508589
G SALL1 spalt like transcription factor 1 JBrowse link 2 64,242,742 64,260,021 RGD:13508589
G SALL4 spalt like transcription factor 4 JBrowse link 24 37,941,498 37,959,713 RGD:13508589
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 JBrowse link 32 17,089,514 17,167,917 RGD:13508589
G TASOR transcription activation suppressor JBrowse link 20 33,665,231 33,713,264 RGD:13508589
G WDR76 WD repeat domain 76 JBrowse link 30 10,559,427 10,611,602 RGD:13508589
HULC complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RNF20 ring finger protein 20 JBrowse link 11 58,239,245 58,266,637 RGD:13508589
G RNF40 ring finger protein 40 JBrowse link 6 17,402,022 17,414,494 RGD:13508589
G UBE2A ubiquitin conjugating enzyme E2 A JBrowse link X 91,608,936 91,617,993 RGD:13508589
G UBE2B ubiquitin conjugating enzyme E2 B JBrowse link 11 22,523,671 22,541,473 RGD:13508589
G UBE2U ubiquitin conjugating enzyme E2 U JBrowse link 5 45,947,637 45,998,353 RGD:13508589
Ino80 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTL6A actin like 6A JBrowse link 34 12,922,506 12,988,334 RGD:13508589
G ACTR5 actin related protein 5 JBrowse link 24 27,154,283 27,190,947 RGD:13508589
G ACTR8 actin related protein 8 JBrowse link 20 36,118,471 36,135,064 RGD:13508589
G INO80 INO80 complex ATPase subunit JBrowse link 30 8,100,536 8,229,868 RGD:13508589
G INO80B INO80 complex subunit B JBrowse link 17 48,674,004 48,676,869 RGD:13508589
G INO80C INO80 complex subunit C JBrowse link 7 54,569,954 54,586,902 RGD:13508589
G INO80E INO80 complex subunit E JBrowse link 6 18,033,366 18,041,604 RGD:13508589
G MCRS1 microspherule protein 1 JBrowse link 27 5,076,075 5,085,483 RGD:13508589
G NFRKB nuclear factor related to kappaB binding protein JBrowse link 5 4,944,278 4,982,377 RGD:13508589
G RUVBL1 RuvB like AAA ATPase 1 JBrowse link 20 2,095,807 2,137,528 RGD:13508589
G RUVBL2 RuvB like AAA ATPase 2 JBrowse link 1 107,384,328 107,400,849 RGD:13508589
G TFPT TCF3 fusion partner JBrowse link 1 103,090,723 103,098,601 RGD:13508589
G UCHL5 ubiquitin C-terminal hydrolase L5 JBrowse link 38 6,004,595 6,045,999 RGD:13508589
G YY1 YY1 transcription factor JBrowse link 8 68,539,511 68,572,796 RGD:13508589
nBAF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTL6B actin like 6B JBrowse link 6 9,045,477 9,059,106 RGD:13508589
G ARID1A AT-rich interaction domain 1A JBrowse link 2 73,331,606 73,401,151 RGD:13508589
G ARID1B AT-rich interaction domain 1B JBrowse link 1 46,370,621 46,800,531 RGD:13508589
G DPF1 double PHD fingers 1 JBrowse link 1 114,753,368 114,763,965 RGD:13508589
G DPF2 double PHD fingers 2 JBrowse link 18 51,833,085 51,847,213 RGD:13508589
G DPF3 double PHD fingers 3 JBrowse link 8 46,020,591 46,178,600 RGD:13508589
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 26 28,692,610 28,728,778 RGD:13508589
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 JBrowse link 20 41,165,593 41,337,237 RGD:13508589
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 JBrowse link 10 481,504 502,914 RGD:13508589
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 27 4,624,962 4,640,229 RGD:13508589
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 16 15,279,295 15,311,210 RGD:13508589
G SS18L1 SS18L1 subunit of BAF chromatin remodeling complex JBrowse link 24 46,195,278 46,214,613 RGD:13508589
npBAF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTL6A actin like 6A JBrowse link 34 12,922,506 12,988,334 RGD:13508589
G ARID1A AT-rich interaction domain 1A JBrowse link 2 73,331,606 73,401,151 RGD:13508589
G PHF10 PHD finger protein 10 JBrowse link 12 71,955,354 71,998,283 RGD:13508589
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 26 28,692,610 28,728,778 RGD:13508589
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 JBrowse link 20 41,165,593 41,337,237 RGD:13508589
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 JBrowse link 10 481,504 502,914 RGD:13508589
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 27 4,624,962 4,640,229 RGD:13508589
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 16 15,279,295 15,311,210 RGD:13508589
G SS18 SS18 subunit of BAF chromatin remodeling complex JBrowse link 7 62,490,901 62,571,607 RGD:13508589
nuclear chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AR androgen receptor JBrowse link 24
X
34,713,390
51,969,785
34,731,461
52,167,450
RGD:13508589
G ASF1A anti-silencing function 1A histone chaperone JBrowse link 1 58,821,324 58,834,935 RGD:13508589
G ASXL1 ASXL transcriptional regulator 1 JBrowse link 24 21,725,126 21,804,745 RGD:13508589
G ASXL2 ASXL transcriptional regulator 2 JBrowse link 17 19,914,026 20,065,141 RGD:13508589
G ASXL3 ASXL transcriptional regulator 3 JBrowse link 7 56,093,897 56,251,261 RGD:13508589
G BUD31 BUD31 homolog JBrowse link 6 10,169,422 10,178,231 RGD:13508589
G CBX7 chromobox 7 JBrowse link 10 25,876,022 25,896,284 RGD:13508589
G CCAR2 cell cycle and apoptosis regulator 2 JBrowse link 25 34,660,026 34,674,129 RGD:13508589
G CDCA5 cell division cycle associated 5 JBrowse link 18 52,115,081 52,129,223 RGD:13508589
G CDK12 cyclin dependent kinase 12 JBrowse link 9 22,900,170 22,979,353 RGD:13508589
G CDK13 cyclin dependent kinase 13 JBrowse link 18 9,801,350 9,920,401 RGD:13508589
G CDK9 cyclin dependent kinase 9 JBrowse link 9 55,615,271 55,619,493 RGD:13508589
G CEBPB CCAAT enhancer binding protein beta JBrowse link 24 36,661,294 36,663,162 RGD:13508589
G CHAF1A chromatin assembly factor 1 subunit A JBrowse link 20 55,248,286 55,276,425 RGD:13508589
G CHAF1B chromatin assembly factor 1 subunit B JBrowse link 31 31,599,840 31,620,436 RGD:13508589
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 JBrowse link 1 31,522,911 31,525,342 RGD:13508589
G CREB3L1 cAMP responsive element binding protein 3 like 1 JBrowse link 18 43,138,779 43,173,535 RGD:13508589
G CREBBP CREB binding protein JBrowse link 6 37,410,201 37,536,688 RGD:13508589
G CTDSPL2 CTD small phosphatase like 2 JBrowse link 30 11,109,571 11,194,985 RGD:13508589
G DFFA DNA fragmentation factor subunit alpha JBrowse link 2 85,364,819 85,372,473 RGD:13508589
G DFFB DNA fragmentation factor subunit beta JBrowse link 5 58,340,183 58,355,353 RGD:13508589
G DLX5 distal-less homeobox 5 JBrowse link 14 22,080,351 22,085,188 RGD:13508589
G DPF1 double PHD fingers 1 JBrowse link 1 114,753,368 114,763,965 RGD:13508589
G DPF2 double PHD fingers 2 JBrowse link 18 51,833,085 51,847,213 RGD:13508589
G DPF3 double PHD fingers 3 JBrowse link 8 46,020,591 46,178,600 RGD:13508589
G DVL3 dishevelled segment polarity protein 3 JBrowse link 34 17,053,534 17,069,965 RGD:13508589
G EGR1 early growth response 1 JBrowse link 11 26,046,195 26,049,806 RGD:13508589
G EME1 essential meiotic structure-specific endonuclease 1 JBrowse link 9 26,342,419 26,350,561 RGD:13508589
G EOMES eomesodermin JBrowse link 23 16,476,498 16,512,406 RGD:13508589
G ESR1 estrogen receptor 1 JBrowse link 1 42,081,952 42,368,544 RGD:13508589
G ETV3 ETS variant transcription factor 3 JBrowse link 7 40,954,104 40,968,544 RGD:13508589
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 16 1,926,443 1,991,995 RGD:13508589
G FER FER tyrosine kinase JBrowse link 3 2,863,804 3,295,999 RGD:13508589
G FOXD3 forkhead box D3 JBrowse link 5 46,818,856 46,821,915 RGD:13508589
G FOXH1 forkhead box H1 JBrowse link 13 37,883,554 37,887,324 RGD:13508589
G GABPA GA binding protein transcription factor subunit alpha JBrowse link 31 21,216,931 21,251,658 RGD:13508589
G GATA3 GATA binding protein 3 JBrowse link 2 28,068,143 28,098,445 RGD:13508589
G GATA5 GATA binding protein 5 JBrowse link 24 46,417,404 46,427,617 RGD:13508589
G H1-2 H1.2 linker histone, cluster member JBrowse link 35 24,009,304 24,011,602 RGD:13508589
G H1-6 H1.6 linker histone, cluster member JBrowse link 35 24,046,374 24,065,892 RGD:13508589
G H2AB1 H2A.B variant histone 1 JBrowse link X 122,910,412 122,913,373 RGD:13508589
G H2AC1 H2A clustered histone 1 JBrowse link 35 23,677,141 23,677,728 RGD:13508589
G H2AC11 H2A clustered histone 11 JBrowse link 35 24,544,024 24,544,645 RGD:13508589
G H2AC13 H2A clustered histone 13 JBrowse link 35 25,000,243 25,001,749 RGD:13508589
G H2AC14 H2A clustered histone 14 JBrowse link 35 25,004,598 25,006,416 RGD:13508589
G H2AC15 H2A clustered histone 15 JBrowse link 35 25,030,215 25,031,023 RGD:13508589
G H2AC17 H2A clustered histone 17 JBrowse link 35 25,060,505 25,061,332 RGD:13508589
G H2AC18 H2A clustered histone 18 JBrowse link 17 59,146,999 59,147,691 RGD:13508589
G H2AC19 H2A clustered histone 19 JBrowse link 17 59,156,821 59,157,523 RGD:13508589
G H2AC20 H2A clustered histone 20 JBrowse link 17 59,175,488 59,176,178 RGD:13508589
G H2AC5 H2A clustered histone 5 JBrowse link 35 24,001,879 24,003,169 RGD:13508589
G H2AC6 H2A clustered histone 6 JBrowse link 35 24,066,960 24,075,002 RGD:13508589
G H2AC7 H2A clustered histone 7 JBrowse link 35 24,124,913 24,127,382 RGD:13508589
G H2AC8 H2A clustered histone 8 JBrowse link 35 24,131,647 24,132,475 RGD:13508589
G H2AJ H2A.J histone JBrowse link 27 31,835,433 31,836,150 RGD:13508589
G H2AW H2A.W histone JBrowse link 14 604,444 605,584 RGD:13508589
G H2AX H2A.X variant histone JBrowse link 5 14,765,625 14,766,590 RGD:13508589
G H2AZ1 H2A.Z variant histone 1 JBrowse link 32 21,889,890 21,892,165 RGD:13508589
G H2AZ2 H2A.Z variant histone 2 RGD:13508589
G HAND2 heart and neural crest derivatives expressed 2 JBrowse link 25 24,140,496 24,143,143 RGD:13508589
G HAT1 histone acetyltransferase 1 JBrowse link 36 16,310,269 16,378,029 RGD:13508589
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 8 36,614,045 36,656,692 RGD:13508589
G HIRA histone cell cycle regulator JBrowse link 26 29,777,984 29,867,992 RGD:13508589
G HMGB1 high mobility group box 1 JBrowse link 25 9,431,223 9,558,167 RGD:13508589
G HMGB2 high mobility group box 2 JBrowse link 25 23,939,024 23,941,720 RGD:13508589
G HMGB3 high mobility group box 3 JBrowse link X 119,152,166 119,159,803 RGD:13508589
G HMGB4 high mobility group box 4 JBrowse link 15 7,915,066 7,915,803 RGD:13508589
G HNRNPD heterogeneous nuclear ribonucleoprotein D JBrowse link 32 6,323,444 6,341,238 RGD:13508589
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 1 75,499,334 75,511,525 RGD:13508589
G IPO4 importin 4 JBrowse link 8 4,171,525 4,180,666 RGD:13508589
G IRF1 interferon regulatory factor 1 JBrowse link 11 20,773,801 20,781,106 RGD:13508589
G JUNB JunB proto-oncogene, AP-1 transcription factor subunit JBrowse link 20 49,358,904 49,360,746 RGD:13508589
G JUND JunD proto-oncogene, AP-1 transcription factor subunit JBrowse link 20 44,737,021 44,738,932 RGD:13508589
G KAT5 lysine acetyltransferase 5 JBrowse link 18 51,499,615 51,507,434 RGD:13508589
G KAT6A lysine acetyltransferase 6A JBrowse link 16 23,604,629 23,717,047 RGD:13508589
G KAT6B lysine acetyltransferase 6B JBrowse link 4 25,131,580 25,303,355 RGD:13508589
G KAT7 lysine acetyltransferase 7 JBrowse link 9 25,841,916 25,875,245 RGD:13508589
G KAT8 lysine acetyltransferase 8 JBrowse link 6 17,114,528 17,125,287 RGD:13508589
G KDM1A lysine demethylase 1A JBrowse link 2 76,313,742 76,375,716 RGD:13508589
G KDM1B lysine demethylase 1B JBrowse link 35 16,954,483 17,014,261 RGD:13508589
G KDM6A lysine demethylase 6A JBrowse link X 38,745,854 38,964,029 RGD:13508589
G KDM6B lysine demethylase 6B JBrowse link 5 32,689,000 32,711,026 RGD:13508589
G KLF1 Kruppel like factor 1 JBrowse link 20 49,295,097 49,298,668 RGD:13508589
G KLHDC3 kelch domain containing 3 JBrowse link 12 11,542,449 11,549,012 RGD:13508589
G LOC488269 histone H1.4 RGD:13508589
G MACROH2A1 macroH2A.1 histone JBrowse link 11 23,369,957 23,448,235 RGD:13508589
G MACROH2A2 macroH2A.2 histone JBrowse link 4 21,057,935 21,087,097 RGD:13508589
G MAX MYC associated factor X JBrowse link 8 39,441,216 39,465,703 RGD:13508589
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 1 21,232,260 21,283,687 RGD:13508589
G MCMBP minichromosome maintenance complex binding protein JBrowse link 28 29,946,228 29,996,711 RGD:13508589
G MEF2A myocyte enhancer factor 2A JBrowse link 3 41,012,103 41,177,588 RGD:13508589
G MEF2B myocyte enhancer factor 2B JBrowse link 20 44,000,253 44,017,371 RGD:13508589
G MEF2C myocyte enhancer factor 2C JBrowse link 3 19,778,997 19,948,203 RGD:13508589
G MEF2D myocyte enhancer factor 2D JBrowse link 7 41,455,771 41,473,807 RGD:13508589
G MEN1 menin 1 JBrowse link 18 52,346,747 52,352,884 RGD:13508589
G MSH6 mutS homolog 6 JBrowse link 10 49,825,330 49,838,036 RGD:13508589
G MYOCD myocardin JBrowse link 5 36,674,476 36,774,435 RGD:13508589
G MYOD1 myogenic differentiation 1 JBrowse link 21 40,257,792 40,260,461 RGD:13508589
G NACC2 NACC family member 2 JBrowse link 9 49,323,613 49,393,017 RGD:13508589
G NASP nuclear autoantigenic sperm protein JBrowse link 15 14,742,008 14,782,186 RGD:13508589
G NCOA1 nuclear receptor coactivator 1 JBrowse link 17 18,880,676 19,124,300 RGD:13508589
G NCOA3 nuclear receptor coactivator 3 RGD:13508589
G NCOR1 nuclear receptor corepressor 1 JBrowse link 5 39,687,530 39,837,003 RGD:13508589
G NCOR2 nuclear receptor corepressor 2 JBrowse link 26 5,352,670 5,493,741 RGD:13508589
G NFATC1 nuclear factor of activated T cells 1 JBrowse link 1 1,027,021 1,121,362 RGD:13508589
G NFATC2 nuclear factor of activated T cells 2 JBrowse link 24 37,606,977 37,734,813 RGD:13508589
G NIPBL NIPBL cohesin loading factor JBrowse link 4 71,583,118 71,780,986 RGD:13508589
G NR1D1 nuclear receptor subfamily 1 group D member 1 JBrowse link 9 22,461,556 22,469,243 RGD:13508589
G NRIP1 nuclear receptor interacting protein 1 JBrowse link 31 11,852,330 11,951,735 RGD:13508589
G NTHL1 nth like DNA glycosylase 1 JBrowse link 6 38,899,144 38,904,637 RGD:13508589
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 JBrowse link 38 2,157,109 2,188,543 RGD:13508589
G PHF10 PHD finger protein 10 JBrowse link 12 71,955,354 71,998,283 RGD:13508589
G PHOX2A paired like homeobox 2A JBrowse link 21 25,895,628 25,900,338 RGD:13508589
G PHOX2B paired like homeobox 2B JBrowse link 13 38,865,963 38,869,912 RGD:13508589
G POGZ pogo transposable element derived with ZNF domain JBrowse link 17 60,464,609 60,511,735 RGD:13508589
G POLR3D RNA polymerase III subunit D JBrowse link 25 35,011,189 35,016,617 RGD:13508589
G POLR3G RNA polymerase III subunit G JBrowse link 3 18,426,169 18,529,304 RGD:13508589
G POLR3GL RNA polymerase III subunit G like JBrowse link 17 58,751,942 58,764,946 RGD:13508589
G POU5F1 POU class 5 homeobox 1 JBrowse link 12 860,702 866,099 RGD:13508589
G PPARD peroxisome proliferator activated receptor delta JBrowse link 12 4,492,867 4,579,340 RGD:13508589
G RAD17 RAD17 checkpoint clamp loader component JBrowse link 2 54,407,184 54,437,676 RGD:13508589
G RAD50 RAD50 double strand break repair protein JBrowse link 11 20,836,863 20,928,930 RGD:13508589
G RAD51 RAD51 recombinase JBrowse link 30 7,842,540 7,877,128 RGD:13508589
G RAD51AP1 RAD51 associated protein 1 JBrowse link 27 40,303,935 40,341,666 RGD:13508589
G RARA retinoic acid receptor alpha JBrowse link 9 22,254,803 22,298,614 RGD:13508589
G RCC1 regulator of chromosome condensation 1 JBrowse link 2 71,948,159 71,972,902 RGD:13508589
G RELA RELA proto-oncogene, NF-kB subunit JBrowse link 18 51,550,003 51,558,861 RGD:13508589
G RIF1 replication timing regulatory factor 1 JBrowse link 19 52,661,278 52,711,969 RGD:13508589
G RSF1 remodeling and spacing factor 1 JBrowse link 21 20,968,356 21,124,308 RGD:13508589
G RUNX2 RUNX family transcription factor 2 JBrowse link 12 13,723,535 13,842,565 RGD:13508589
G SETD1A SET domain containing 1A, histone lysine methyltransferase JBrowse link 6 17,224,107 17,246,527 RGD:13508589
G SETD3 SET domain containing 3, actin histidine methyltransferase JBrowse link 8 67,821,394 67,899,814 RGD:13508589
G SLX4 SLX4 structure-specific endonuclease subunit JBrowse link 6 37,648,297 37,666,584 RGD:13508589
G SMAD2 SMAD family member 2 JBrowse link 7 43,696,883 43,778,063 RGD:13508589
G SMAD3 SMAD family member 3 JBrowse link 30 31,246,313 31,360,098 RGD:13508589
G SMAD4 SMAD family member 4 JBrowse link 1 23,875,989 23,930,027 RGD:13508589
G SNAI2 snail family transcriptional repressor 2 JBrowse link 29 1,154,132 1,156,653 RGD:13508589
G SOX18 SRY-box transcription factor 18 JBrowse link 24 47,494,581 47,496,563 RGD:13508589
G SP1 Sp1 transcription factor JBrowse link 27 1,802,587 1,861,187 RGD:13508589
G SPI1 Spi-1 proto-oncogene JBrowse link 18 42,253,849 42,269,497 RGD:13508589
G SRF serum response factor JBrowse link 12 11,664,441 11,673,846 RGD:13508589
G SSRP1 structure specific recognition protein 1 JBrowse link 18 38,802,673 38,812,134 RGD:13508589
G STAT3 signal transducer and activator of transcription 3 JBrowse link 9 20,539,660 20,614,631 RGD:13508589
G TAF4 TATA-box binding protein associated factor 4 JBrowse link 24 46,076,744 46,107,371 RGD:13508589
G TAF5 TATA-box binding protein associated factor 5 JBrowse link 28 15,747,102 15,761,744 RGD:13508589
G TBX19 T-box transcription factor 19 JBrowse link 7 30,198,912 30,248,410 RGD:13508589
G TBX6 T-box transcription factor 6 JBrowse link 6 18,093,201 18,098,592 RGD:13508589
G TBXT T-box transcription factor T JBrowse link 1 54,183,495 54,192,331 RGD:13508589
G TCF12 transcription factor 12 JBrowse link 30 22,108,841 22,473,224 RGD:13508589
G TCF3 transcription factor 3 JBrowse link 20 57,255,091 57,284,223 RGD:13508589
G TCF7L2 transcription factor 7 like 2 JBrowse link 28 23,966,079 24,162,775 RGD:13508589
G TIMELESS timeless circadian regulator JBrowse link 10 671,829 701,152 RGD:13508589
G TIPIN TIMELESS interacting protein JBrowse link 30 30,641,557 30,657,353 RGD:13508589
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
G TP63 tumor protein p63 JBrowse link 34 21,766,861 21,985,095 RGD:13508589
G TRPS1 transcriptional repressor GATA binding 1 JBrowse link 13 15,017,180 15,273,177 RGD:13508589
G TTC21B tetratricopeptide repeat domain 21B JBrowse link 36 11,009,362 11,086,586 RGD:13508589
G UBE2A ubiquitin conjugating enzyme E2 A JBrowse link X 91,608,936 91,617,993 RGD:13508589
G UBE2B ubiquitin conjugating enzyme E2 B JBrowse link 11 22,523,671 22,541,473 RGD:13508589
G UBE2U ubiquitin conjugating enzyme E2 U JBrowse link 5 45,947,637 45,998,353 RGD:13508589
G USF1 upstream transcription factor 1 JBrowse link 38 21,412,943 21,419,072 RGD:13508589
G WBP2 WW domain binding protein 2 JBrowse link 9 4,743,476 4,752,301 RGD:13508589
G XRCC1 X-ray repair cross complementing 1 JBrowse link 1 111,548,719 111,571,816 RGD:13508589
G YY1 YY1 transcription factor JBrowse link 8 68,539,511 68,572,796 RGD:13508589
G ZFP42 ZFP42 zinc finger protein JBrowse link 16 43,091,607 43,092,521 RGD:13508589
G ZNF385A zinc finger protein 385A JBrowse link 27 928,250 948,275 RGD:13508589
nuclear euchromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALKBH1 alkB homolog 1, histone H2A dioxygenase JBrowse link 8 50,444,994 50,471,151 RGD:13508589
G CBX3 chromobox 3 JBrowse link 14 39,510,694 39,520,796 RGD:13508589
G CECR2 CECR2 histone acetyl-lysine reader JBrowse link 27 45,125,909 45,193,577 RGD:13508589
G CREB1 cAMP responsive element binding protein 1 JBrowse link 37 15,921,214 15,978,492 RGD:13508589
G CTNNB1 catenin beta 1 JBrowse link 23 10,559,722 10,572,933 RGD:13508589
G H1-2 H1.2 linker histone, cluster member JBrowse link 35 24,009,304 24,011,602 RGD:13508589
G H1-6 H1.6 linker histone, cluster member JBrowse link 35 24,046,374 24,065,892 RGD:13508589
G KLF4 Kruppel like factor 4 JBrowse link 11 62,881,840 62,886,676 RGD:13508589
G LOC488269 histone H1.4 RGD:13508589
G NR1H4 nuclear receptor subfamily 1 group H member 4 JBrowse link 15 39,497,313 39,608,120 RGD:13508589
G POLR2A RNA polymerase II subunit A JBrowse link 5 32,403,814 32,429,717 RGD:13508589
G POU4F2 POU class 4 homeobox 2 JBrowse link 15 45,030,818 45,034,446 RGD:13508589
G RBMX RNA binding motif protein X-linked JBrowse link X 107,173,599 107,182,404 RGD:13508589
G RUVBL2 RuvB like AAA ATPase 2 JBrowse link 1 107,384,328 107,400,849 RGD:13508589
G SIRT1 sirtuin 1 JBrowse link 4 19,188,616 19,220,031 RGD:13508589
G TRIM24 tripartite motif containing 24 JBrowse link 16 10,033,993 10,133,450 RGD:13508589
nuclear heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BEND3 BEN domain containing 3 JBrowse link 12 64,302,403 64,324,396 RGD:13508589
G CBX3 chromobox 3 JBrowse link 14 39,510,694 39,520,796 RGD:13508589
G CBX5 chromobox 5 JBrowse link 27 1,020,500 1,058,027 RGD:13508589
G DNMT3A DNA methyltransferase 3 alpha JBrowse link 17 19,489,524 19,563,074 RGD:13508589
G IL33 interleukin 33 JBrowse link 11 27,219,878 27,256,723 RGD:13508589
G KMT5C lysine methyltransferase 5C JBrowse link 1 102,334,687 102,342,090 RGD:13508589
G LOC488269 histone H1.4 RGD:13508589
G MPHOSPH8 M-phase phosphoprotein 8 JBrowse link 25 18,392,706 18,443,241 RGD:13508589
G PSIP1 PC4 and SFRS1 interacting protein 1 JBrowse link 11 35,746,064 35,788,473 RGD:13508589
G SIRT1 sirtuin 1 JBrowse link 4 19,188,616 19,220,031 RGD:13508589
G TCP1 t-complex 1 JBrowse link 1 49,029,260 49,038,023 RGD:13508589
G TNKS1BP1 tankyrase 1 binding protein 1 JBrowse link 18 38,815,845 38,838,184 RGD:13508589
G UHRF1 ubiquitin like with PHD and ring finger domains 1 JBrowse link 20 54,858,673 54,889,769 RGD:13508589
G UHRF2 ubiquitin like with PHD and ring finger domains 2 JBrowse link 11 27,406,275 27,474,971 RGD:13508589
nuclear nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CENPA centromere protein A JBrowse link 17 20,808,320 20,833,747 RGD:13508589
G H2AW H2A.W histone JBrowse link 14 604,444 605,584 RGD:13508589
G H4-16 H4 histone 16 JBrowse link 27 31,839,899 31,840,463 RGD:13508589
G H4C8 H4 clustered histone 8 JBrowse link 35 24,174,401 24,194,848 RGD:13508589
G IRF4 interferon regulatory factor 4 JBrowse link 35 760,367 782,314 RGD:13508589
G LOC106558236 histone H4 JBrowse link 35 24,555,412 24,556,402 RGD:13508589
G MPHOSPH8 M-phase phosphoprotein 8 JBrowse link 25 18,392,706 18,443,241 RGD:13508589
G TNP1 transition protein 1 JBrowse link 37 23,742,875 23,743,417 RGD:13508589
G TNP2 transition protein 2 JBrowse link 6 31,498,361 31,498,740 RGD:13508589
nuclear pericentric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATRX ATRX chromatin remodeler JBrowse link X 59,772,067 60,107,016 RGD:13508589
G CENPA centromere protein A JBrowse link 17 20,808,320 20,833,747 RGD:13508589
G ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 JBrowse link 25 29,785,641 29,812,536 RGD:13508589
G IKZF1 IKAROS family zinc finger 1 JBrowse link 18 1,661,851 1,750,987 RGD:13508589
G NCAPD3 non-SMC condensin II complex subunit D3 JBrowse link 5 1,021,588 1,081,846 RGD:13508589
nuclear subtelomeric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATRX ATRX chromatin remodeler JBrowse link X 59,772,067 60,107,016 RGD:13508589
nuclear telomeric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIRT6 sirtuin 6 JBrowse link 20 55,412,989 55,424,944 RGD:13508589
G SIRT7 sirtuin 7 JBrowse link 9 377,141 383,355 RGD:13508589
nucleolus organizer region term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIRT7 sirtuin 7 JBrowse link 9 377,141 383,355 RGD:13508589
nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H1-2 H1.2 linker histone, cluster member JBrowse link 35 24,009,304 24,011,602 RGD:13508589
G H1-6 H1.6 linker histone, cluster member JBrowse link 35 24,046,374 24,065,892 RGD:13508589
G H2AB1 H2A.B variant histone 1 JBrowse link X 122,910,412 122,913,373 RGD:13508589
G H2AC1 H2A clustered histone 1 JBrowse link 35 23,677,141 23,677,728 RGD:13508589
G H2AC11 H2A clustered histone 11 JBrowse link 35 24,544,024 24,544,645 RGD:13508589
G H2AC13 H2A clustered histone 13 JBrowse link 35 25,000,243 25,001,749 RGD:13508589
G H2AC14 H2A clustered histone 14 JBrowse link 35 25,004,598 25,006,416 RGD:13508589
G H2AC15 H2A clustered histone 15 JBrowse link 35 25,030,215 25,031,023 RGD:13508589
G H2AC17 H2A clustered histone 17 JBrowse link 35 25,060,505 25,061,332 RGD:13508589
G H2AC18 H2A clustered histone 18 JBrowse link 17 59,146,999 59,147,691 RGD:13508589
G H2AC19 H2A clustered histone 19 JBrowse link 17 59,156,821 59,157,523 RGD:13508589
G H2AC20 H2A clustered histone 20 JBrowse link 17 59,175,488 59,176,178 RGD:13508589
G H2AC5 H2A clustered histone 5 JBrowse link 35 24,001,879 24,003,169 RGD:13508589
G H2AC6 H2A clustered histone 6 JBrowse link 35 24,066,960 24,075,002 RGD:13508589
G H2AC7 H2A clustered histone 7 JBrowse link 35 24,124,913 24,127,382 RGD:13508589
G H2AC8 H2A clustered histone 8 JBrowse link 35 24,131,647 24,132,475 RGD:13508589
G H2AJ H2A.J histone JBrowse link 27 31,835,433 31,836,150 RGD:13508589
G H2AX H2A.X variant histone JBrowse link 5 14,765,625 14,766,590 RGD:13508589
G H2AZ1 H2A.Z variant histone 1 JBrowse link 32 21,889,890 21,892,165 RGD:13508589
G H2AZ2 H2A.Z variant histone 2 RGD:13508589
G H2BC13 H2B clustered histone 13 JBrowse link 35 24,999,666 25,000,124 RGD:13508589
G H2BC14 H2B clustered histone 14 JBrowse link 35 25,006,472 25,035,326 RGD:13508589
G H2BC15 H2B clustered histone 15 JBrowse link 35 25,031,173 25,035,326 RGD:13508589
G H2BC18 H2B clustered histone 18 RGD:13508589
G H2BC2 H2B clustered histone 2 JBrowse link 35 23,690,580 23,691,133 RGD:13508589
G H2BC20 H2B clustered histone 20 JBrowse link 17 59,156,148 59,156,809 RGD:13508589
G H2BC21 H2B clustered histone 21 JBrowse link 17 59,173,197 59,175,428 RGD:13508589
G H2BC3 H2B clustered histone 3 JBrowse link 35 24,001,132 24,001,599 RGD:13508589
G H2BC4 H2B clustered histone 4 JBrowse link 35 24,062,068 24,066,934 RGD:13508589
G H2BC5 H2B clustered histone 5 JBrowse link 35 24,093,447 24,102,443 RGD:13508589
G H2BC6 H2B clustered histone 6 JBrowse link 35 24,115,034 24,115,551 RGD:13508589
G H2BC8 H2B clustered histone 8 JBrowse link 35 24,130,229 24,131,736 RGD:13508589
G H2BC9 H2B clustered histone 9 JBrowse link 35 24,178,907 24,179,379 RGD:13508589
G H2BU1 H2B.U histone 1 JBrowse link 14 603,716 604,222 RGD:13508589
G H2BW1 H2B.W histone 1 JBrowse link X 77,312,494 77,339,851 RGD:13508589
G H3-3A H3.3 histone A JBrowse link 7 38,797,168 38,805,417 RGD:13508589
G H3-3B H3.3 histone B JBrowse link 9 4,805,655 4,808,076 RGD:13508589
G H3C1 H3 clustered histone 1 JBrowse link 35 23,975,775 23,977,803 RGD:13508589
G H3C13 H3 clustered histone 13 JBrowse link 17 59,121,020 59,129,410 RGD:13508589
G H3C7 H3 clustered histone 7 JBrowse link 35 24,174,818 24,177,957 RGD:13508589
G HP1BP3 heterochromatin protein 1 binding protein 3 JBrowse link 2 78,164,239 78,203,032 RGD:13508589
G KAT6A lysine acetyltransferase 6A JBrowse link 16 23,604,629 23,717,047 RGD:13508589
G KAT6B lysine acetyltransferase 6B JBrowse link 4 25,131,580 25,303,355 RGD:13508589
G KDM1B lysine demethylase 1B JBrowse link 35 16,954,483 17,014,261 RGD:13508589
G LOC488269 histone H1.4 RGD:13508589
G LOC612779 histone H3.3-like JBrowse link 1 19,127,678 19,128,230 RGD:13508589
G MACROH2A1 macroH2A.1 histone JBrowse link 11 23,369,957 23,448,235 RGD:13508589
G MACROH2A2 macroH2A.2 histone JBrowse link 4 21,057,935 21,087,097 RGD:13508589
G SHPRH SNF2 histone linker PHD RING helicase JBrowse link 1 37,076,318 37,170,664 RGD:13508589
G SLF1 SMC5-SMC6 complex localization factor 1 JBrowse link 3 14,792,851 14,877,024 RGD:13508589
G SOS1 SOS Ras/Rac guanine nucleotide exchange factor 1 JBrowse link 17 31,007,940 31,181,569 RGD:13508589
G SOS2 SOS Ras/Rho guanine nucleotide exchange factor 2 JBrowse link 8 26,636,849 26,698,837 RGD:13508589
G SPHK2 sphingosine kinase 2 JBrowse link 1 107,681,425 107,689,790 RGD:13508589
G TNP1 transition protein 1 JBrowse link 37 23,742,875 23,743,417 RGD:13508589
G TNP2 transition protein 2 JBrowse link 6 31,498,361 31,498,740 RGD:13508589
NuRD complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHD3 chromodomain helicase DNA binding protein 3 JBrowse link 5 32,747,341 32,768,114 RGD:13508589
G CHD4 chromodomain helicase DNA binding protein 4 JBrowse link 27 38,411,009 38,440,367 RGD:13508589
G GATAD2A GATA zinc finger domain containing 2A JBrowse link 20 43,736,471 43,853,505 RGD:13508589
G GATAD2B GATA zinc finger domain containing 2B JBrowse link 7 43,201,307 43,295,868 RGD:13508589
G HDAC1 histone deacetylase 1 JBrowse link 2 68,901,339 68,936,473 RGD:13508589
G HDAC2 histone deacetylase 2 JBrowse link 12 70,053,822 70,083,491 RGD:13508589
G MTA1 metastasis associated 1 JBrowse link 8 72,752,894 72,772,236 RGD:13508589
G MTA2 metastasis associated 1 family member 2 JBrowse link 18 54,038,073 54,046,376 RGD:13508589
G MTA3 metastasis associated 1 family member 3 RGD:13508589
G RBBP7 RB binding protein 7, chromatin remodeling factor JBrowse link X 12,981,852 13,006,049 RGD:13508589
NURF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BPTF bromodomain PHD finger transcription factor JBrowse link 9 12,586,107 12,703,296 RGD:13508589
G C5H17orf49 chromosome 5 C17orf49 homolog JBrowse link 5 32,042,545 32,045,347 RGD:13508589
G HMGXB4 HMG-box containing 4 JBrowse link 10 28,826,760 28,857,473 RGD:13508589
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 100,678,457 100,749,216 RGD:13508589
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 15 42,731,147 42,771,577 RGD:13508589
pericentric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAZ1B bromodomain adjacent to zinc finger domain 1B JBrowse link 6 6,709,648 6,776,904 RGD:13508589
G CBX1 chromobox 1 JBrowse link 9 24,363,566 24,369,060 RGD:13508589
G CBX5 chromobox 5 JBrowse link 27 1,020,500 1,058,027 RGD:13508589
G DNMT1 DNA methyltransferase 1 JBrowse link 20 50,872,213 50,928,352 RGD:13508589
G HELLS helicase, lymphoid specific JBrowse link 28 8,660,866 8,705,570 RGD:13508589
G KDM4A lysine demethylase 4A JBrowse link 15 16,521,760 16,570,965 RGD:13508589
G KMT5C lysine methyltransferase 5C JBrowse link 1 102,334,687 102,342,090 RGD:13508589
G MACROH2A1 macroH2A.1 histone JBrowse link 11 23,369,957 23,448,235 RGD:13508589
G SNAI1 snail family transcriptional repressor 1 JBrowse link 24 36,498,343 36,503,623 RGD:13508589
perichromatin fibrils term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 10 11,265,044 11,297,395 RGD:13508589
G DHX9 DExH-box helicase 9 JBrowse link 7 16,233,763 16,292,576 RGD:13508589
G NUFIP1 nuclear FMR1 interacting protein 1 JBrowse link 22 6,036,775 6,082,196 RGD:13508589
G TRIM24 tripartite motif containing 24 JBrowse link 16 10,033,993 10,133,450 RGD:13508589
rDNA heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOP53 NOP53 ribosome biogenesis factor JBrowse link 1 108,307,039 108,315,732 RGD:13508589
G RRP8 ribosomal RNA processing 8 JBrowse link 21 29,907,555 29,917,142 RGD:13508589
G SIRT1 sirtuin 1 JBrowse link 4 19,188,616 19,220,031 RGD:13508589
RSC-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PBRM1 polybromo 1 JBrowse link 20 37,110,437 37,231,676 RGD:13508589
G SUZ12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 9 40,992,797 41,038,729 RGD:13508589
RSF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RSF1 remodeling and spacing factor 1 JBrowse link 21 20,968,356 21,124,308 RGD:13508589
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 15 42,731,147 42,771,577 RGD:13508589
senescence-associated heterochromatin focus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HMGA1 high mobility group AT-hook 1 JBrowse link 12 3,528,818 3,538,533 RGD:13508589
sex chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EED embryonic ectoderm development JBrowse link 21 13,260,062 13,289,511 RGD:13508589
G PCGF2 polycomb group ring finger 2 JBrowse link 9 23,488,862 23,499,769 RGD:13508589
G RING1 ring finger protein 1 JBrowse link 12 2,671,578 2,675,488 RGD:13508589
G RNF2 ring finger protein 2 JBrowse link 7 18,240,672 18,283,091 RGD:13508589
G SUZ12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 9 40,992,797 41,038,729 RGD:13508589
Sin3 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HDAC1 histone deacetylase 1 JBrowse link 2 68,901,339 68,936,473 RGD:13508589
G HDAC2 histone deacetylase 2 JBrowse link 12 70,053,822 70,083,491 RGD:13508589
G ING2 inhibitor of growth family member 2 JBrowse link 16 46,843,478 46,850,856 RGD:13508589
G MORF4L1 mortality factor 4 like 1 JBrowse link 3 58,127,152 58,149,709 RGD:13508589
G NCOR1 nuclear receptor corepressor 1 JBrowse link 5 39,687,530 39,837,003 RGD:13508589
G SIN3A SIN3 transcription regulator family member A JBrowse link 30 38,231,844 38,306,665 RGD:13508589
G SINHCAF SIN3-HDAC complex associated factor JBrowse link 27 17,421,065 17,456,628 RGD:13508589
Sin3-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRMS1 BRMS1 transcriptional repressor and anoikis regulator JBrowse link 18 50,967,175 50,974,816 RGD:13508589
G BRMS1L BRMS1 like transcriptional repressor JBrowse link 8 14,487,055 14,517,613 RGD:13508589
G HDAC1 histone deacetylase 1 JBrowse link 2 68,901,339 68,936,473 RGD:13508589
G HDAC2 histone deacetylase 2 JBrowse link 12 70,053,822 70,083,491 RGD:13508589
G PHF12 PHD finger protein 12 JBrowse link 9 43,076,171 43,116,446 RGD:13508589
G SAP130 Sin3A associated protein 130 JBrowse link 19 22,590,059 22,673,543 RGD:13508589
G SUDS3 SDS3 homolog, SIN3A corepressor complex component JBrowse link 26 14,716,759 14,749,475 RGD:13508589
SWI/SNF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTL6A actin like 6A JBrowse link 34 12,922,506 12,988,334 RGD:13508589
G ACTL6B actin like 6B JBrowse link 6 9,045,477 9,059,106 RGD:13508589
G ARID1A AT-rich interaction domain 1A JBrowse link 2 73,331,606 73,401,151 RGD:13508589
G ARID1B AT-rich interaction domain 1B JBrowse link 1 46,370,621 46,800,531 RGD:13508589
G BICRAL BRD4 interacting chromatin remodeling complex associated protein like JBrowse link 12 11,358,790 11,436,002 RGD:13508589
G BRD9 bromodomain containing 9 JBrowse link 34 11,541,005 11,564,760 RGD:13508589
G MPND MPN domain containing JBrowse link 20 55,311,890 55,320,226 RGD:13508589
G MYSM1 Myb like, SWIRM and MPN domains 1 JBrowse link 5 51,037,222 51,079,229 RGD:13508589
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 90,709,221 90,884,295 RGD:13508589
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 20 50,175,489 50,268,865 RGD:13508589
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 26 28,692,610 28,728,778 RGD:13508589
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 JBrowse link 20 41,165,593 41,337,237 RGD:13508589
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 JBrowse link 10 481,504 502,914 RGD:13508589
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 27 4,624,962 4,640,229 RGD:13508589
G SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 9 11,787,676 11,823,900 RGD:13508589
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 16 15,279,295 15,311,210 RGD:13508589
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 9 22,015,402 22,036,424 RGD:13508589
G SS18 SS18 subunit of BAF chromatin remodeling complex JBrowse link 7 62,490,901 62,571,607 RGD:13508589
Swi5-Sfr1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SFR1 SWI5 dependent homologous recombination repair protein 1 JBrowse link 28 16,436,261 16,440,219 RGD:13508589
Swr1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTR6 actin related protein 6 JBrowse link 15 39,312,863 39,342,208 RGD:13508589
G ANP32E acidic nuclear phosphoprotein 32 family member E JBrowse link 17 59,460,864 59,482,467 RGD:13508589
G BRD8 bromodomain containing 8 JBrowse link 11 25,793,375 25,825,868 RGD:13508589
G DMAP1 DNA methyltransferase 1 associated protein 1 JBrowse link 15 16,077,164 16,085,666 RGD:13508589
G ING3 inhibitor of growth family member 3 JBrowse link 14 59,067,282 59,093,399 RGD:13508589
G RUVBL1 RuvB like AAA ATPase 1 JBrowse link 20 2,095,807 2,137,528 RGD:13508589
G RUVBL2 RuvB like AAA ATPase 2 JBrowse link 1 107,384,328 107,400,849 RGD:13508589
G SRCAP Snf2 related CREBBP activator protein JBrowse link 6 17,437,097 17,470,724 RGD:13508589
G ZNHIT1 zinc finger HIT-type containing 1 JBrowse link 6 8,658,288 8,663,511 RGD:13508589
telomeric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATRX ATRX chromatin remodeler JBrowse link X 59,772,067 60,107,016 RGD:13508589
transcriptionally active chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFF4 AF4/FMR2 family member 4 JBrowse link 11 21,157,790 21,218,750 RGD:13508589
G BCAS3 BCAS3 microtubule associated cell migration factor JBrowse link 9 35,253,617 35,845,206 RGD:13508589
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 21 33,915,804 33,949,597 RGD:13508589
G ESR1 estrogen receptor 1 JBrowse link 1 42,081,952 42,368,544 RGD:13508589
G EXOSC3 exosome component 3 JBrowse link 11 54,072,993 54,079,024 RGD:13508589
G EXOSC4 exosome component 4 JBrowse link 13 37,574,359 37,576,331 RGD:13508589
G EXOSC5 exosome component 5 JBrowse link 1 112,599,519 112,609,039 RGD:13508589
G ICE1 interactor of little elongation complex ELL subunit 1 JBrowse link 34 8,052,211 8,110,779 RGD:13508589
G ICE2 interactor of little elongation complex ELL subunit 2 JBrowse link 30 25,243,204 25,309,868 RGD:13508589
G PADI2 peptidyl arginine deiminase 2 JBrowse link 2 81,116,031 81,147,889 RGD:13508589
G PCID2 PCI domain containing 2 JBrowse link 22 60,602,440 60,623,811 RGD:13508589
G PSIP1 PC4 and SFRS1 interacting protein 1 JBrowse link 11 35,746,064 35,788,473 RGD:13508589
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 9 42,859,154 42,896,044 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 13843
    cellular anatomical entity 13700
      chromatin 401
        CENP-A containing chromatin + 0
        cytoplasmic chromatin + 0
        euchromatin + 21
        heterochromatin + 53
        nuclear chromatin + 280
        nucleosome + 62
        transcriptionally active chromatin 13
        transcriptionally silent chromatin 0
Path 2
Term Annotations click to browse term
  cellular_component 13843
    cellular anatomical entity 13700
      organelle 8770
        non-membrane-bounded organelle 2852
          intracellular non-membrane-bounded organelle 2850
            chromosome 735
              chromatin 401
                CENP-A containing chromatin + 0
                cytoplasmic chromatin + 0
                euchromatin + 21
                heterochromatin + 53
                nuclear chromatin + 280
                nucleosome + 62
                transcriptionally active chromatin 13
                transcriptionally silent chromatin 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.