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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) RGD PMID:15750620 NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674 		JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:31467087)		 UniProt
Ensembl
RGD		 PMID:31467087 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) RGD PMID:11470886 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
ISO		 GO_REF:0000024
(PMID:1730053), (PMID:24191025), (PMID:3335506)		 UniProt
RGD		 PMID:1730053 PMID:3335506 PMID:24191025 GO_REF:0000024 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO (PMID:1730053) RGD PMID:1730053 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939 		JBrowse link
G Polh DNA polymerase eta involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Sirt1 sirtuin 1 involved_in ISO
IEA		 (MGI:5297784|PMID:17612497)
GO_REF:0000107		 RGD
Ensembl		 PMID:17612497 GO_REF:0000107 MGI:5297784 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450 		JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in ISS
IBA
IEA
ISO		 GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:15670210)		 UniProt
GO_Central
Ensembl
RGD		 PMID:15670210 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr17:31,621,410...31,641,659
Ensembl chr17:31,621,411...31,641,659 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS		 (PMID:1730053)
GO_REF:0000024		 RGD
UniProt		 PMID:1730053 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:23993650) RGD PMID:23993650 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA
ISS		 (PMID:24191025)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:24191025 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 involved_in ISO
IBA		 (PMID:24191025)
GO_REF:0000033		 RGD
GO_Central		 PMID:24191025 GO_REF:0000033 NCBI chr10:63,407,237...63,417,605
Ensembl chr10:63,407,213...63,417,605 		JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576 		JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in ISO
IEA		 (PMID:24449906)
GO_REF:0000107		 RGD
Ensembl		 PMID:24449906 GO_REF:0000107 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665 		JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305 		JBrowse link
G Polh DNA polymerase eta involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723 		JBrowse link
G Polk DNA polymerase kappa involved_in ISO
IBA		 (PMID:28297716)
GO_REF:0000033		 RGD
GO_Central		 PMID:28297716 GO_REF:0000033 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313 		JBrowse link
G Polq DNA polymerase theta involved_in ISO (PMID:30655289) RGD PMID:30655289 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) RGD PMID:24682820 PMID:25746449 PMID:28534480 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565 		JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:11711549)		 GO_Central
RGD		 PMID:11711549 GO_REF:0000033 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in ISO
IBA		 (PMID:24449906)
GO_REF:0000033		 RGD
GO_Central		 PMID:24449906 GO_REF:0000033 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099 		JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 acts_upstream_of_or_within ISO MGI:5314540 (PMID:22011390) RGD PMID:22011390 NCBI chr10:57,945,272...57,963,081
Ensembl chr10:57,932,187...57,963,081 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
MGI:109542|MGI:3580000 (PMID:22164254)
GO_REF:0000118
GO_REF:0000033		 Ensembl
RGD
TreeGrafter
GO_Central		 PMID:22164254 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931|MGI:1913904 (PMID:22164254) RGD PMID:22164254 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tex12 testis expressed 12 acts_upstream_of_or_within ISO MGI:109542|MGI:3811722 (PMID:22164254) RGD PMID:22164254 NCBI chr 8:50,908,161...50,913,202
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in ISO (PMID:20129063) RGD PMID:20129063 NCBI chr13:103,115,810...103,155,029
Ensembl chr13:103,117,186...103,154,890 		JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO
ISS		 (PMID:22266823)
GO_REF:0000024		 RGD
UniProt		 PMID:22266823 GO_REF:0000024 NCBI chr 5:165,808,370...165,815,291
Ensembl chr 5:165,808,657...165,815,333 		JBrowse link
G LOC100363428 PCNA-associated factor-like involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr15:84,610,314...84,612,236 JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 involved_in ISO (PMID:24695737) RGD PMID:24695737 NCBI chr 7:107,949,031...107,958,377
Ensembl chr 7:107,949,043...107,958,304 		JBrowse link
G Pclaf PCNA clamp associated factor involved_in ISO
IBA
IEA
ISS		 (PMID:23000965)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024		 RGD
GO_Central
TreeGrafter
UniProt		 PMID:23000965 GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:66,420,606...66,432,994
Ensembl chr 8:66,420,587...66,432,994
Ensembl chr 8:66,420,587...66,432,994 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO
ISS
IBA		 (PMID:20129063)
GO_REF:0000024
GO_REF:0000033		 RGD
UniProt
GO_Central		 PMID:20129063 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995 		JBrowse link
G Poli DNA polymerase iota involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3055735 (PMID:17114294)		 GO_Central
RGD		 PMID:17114294 GO_REF:0000033 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418 		JBrowse link
G Poln DNA polymerase nu involved_in ISO (PMID:19908865), (PMID:20102227) RGD PMID:19908865 PMID:20102227 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO
IBA		 (PMID:24240614), (PMID:24267451)
GO_REF:0000033		 RGD
GO_Central		 PMID:24240614 PMID:24267451 GO_REF:0000033 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:22681887), (PMID:22902628), (PMID:23042605), (PMID:23042607)		 Ensembl
UniProt
RGD		 PMID:22681887 PMID:22902628 PMID:23042605 PMID:23042607 GO_REF:0000024 GO_REF:0000107 NCBI chr19:52,857,612...52,864,864
Ensembl chr19:52,857,866...52,864,864 		JBrowse link
G Vcp valosin-containing protein involved_in ISO
ISS		 (PMID:23042605)
GO_REF:0000024		 RGD
UniProt		 PMID:23042605 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    response to stimulus 10920
      cellular response to stimulus 9075
        cellular response to stress 2061
          DNA damage response 891
            DNA repair 561
              DNA synthesis involved in DNA repair 36
                DNA synthesis involved in UV-damage excision repair 3
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 23
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              DNA metabolic process 991
                DNA repair 561
                  DNA synthesis involved in DNA repair 36
                    DNA synthesis involved in UV-damage excision repair 3
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 23
paths to the root