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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA synthesis involved in DNA repair
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Accession:GO:0000731 term browser browse the term
Definition:Synthesis of DNA that proceeds from the broken 3' single-strand DNA end and uses the homologous intact duplex as the template.
Synonyms:narrow_synonym: mitotic DNA repair synthesis
 broad_synonym: DNA repair synthesis
 related_synonym: DNA synthesis during DNA repair


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DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) RGD PMID:15750620
G Hrob homologous recombination factor with OB-fold involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:31467087)
UniProt
Ensembl
RGD
PMID:31467087 GO_REF:0000024 GO_REF:0000107 NCBI chr10:90,192,608...90,214,486
Ensembl chr10:90,192,627...90,214,486
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) RGD PMID:11470886 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:1730053), (PMID:24191025), (PMID:3335506)
UniProt
RGD
PMID:1730053 PMID:3335506 PMID:24191025 GO_REF:0000024 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:219,480,841...219,483,244
Ensembl chr 1:219,481,575...219,483,241
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO (PMID:1730053) RGD PMID:1730053 NCBI chr12:52,403,533...52,452,075
Ensembl chr12:52,403,529...52,452,040
JBrowse link
G Polh DNA polymerase eta involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr 9:17,163,354...17,198,006
Ensembl chr 9:17,163,354...17,197,132
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (MGI:5297784|PMID:17612497) RGD PMID:17612497 MGI:5297784 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15670210)
UniProt
Ensembl
RGD
PMID:15670210 GO_REF:0000024 GO_REF:0000107 NCBI chr17:32,933,395...32,953,641
Ensembl chr17:32,933,396...32,953,641
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS
(PMID:1730053)
GO_REF:0000024
RGD
UniProt
PMID:1730053 GO_REF:0000024 NCBI chr  X:62,382,604...62,698,830
Ensembl chr  X:62,382,608...62,698,830
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:165,085,142...165,122,385
Ensembl chr 1:165,083,622...165,123,455
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:5562498|PMID:23993650) RGD PMID:23993650 MGI:5562498 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA
ISS
(PMID:24191025)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:24191025 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:100,538,066...100,554,105
Ensembl chr 1:100,537,900...100,554,488
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 involved_in ISO
IBA
(PMID:24191025)
PMID:21873635
RGD PMID:24191025, PMID:21873635 RGD:13792537 NCBI chr10:65,781,994...65,790,833
Ensembl chr10:65,780,494...65,790,272
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:44,714,137...44,786,330
Ensembl chr 9:44,714,386...44,786,041
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pole2 DNA polymerase epsilon 2, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,494,348...91,532,355
Ensembl chr 6:91,494,393...91,518,996
JBrowse link
G Polh DNA polymerase eta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,163,354...17,198,006
Ensembl chr 9:17,163,354...17,197,132
JBrowse link
G Polk DNA polymerase kappa involved_in IBA
ISO
PMID:21873635
(PMID:28297716)
RGD PMID:28297716, PMID:21873635 RGD:13792537 NCBI chr 2:27,305,718...27,364,906
Ensembl chr 2:27,305,728...27,364,906
JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) RGD PMID:24682820 PMID:25746449 PMID:28534480 NCBI chr16:48,863,385...48,900,409
Ensembl chr16:48,863,418...48,897,795
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2157239|PMID:11711549)
RGD PMID:11711549, PMID:21873635 MGI:2157239, RGD:13792537 NCBI chr 9:44,714,137...44,786,330
Ensembl chr 9:44,714,386...44,786,041
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:44,803,664...44,961,362
Ensembl chr20:44,803,666...44,961,382
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 acts_upstream_of_or_within ISO MGI:5314540 (MGI:5314623|PMID:22011390) RGD PMID:22011390 MGI:5314623 NCBI chr10:59,893,064...59,910,769
Ensembl chr10:59,879,850...59,911,051
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:109542|MGI:3580000 (MGI:5315075|PMID:22164254)
PMID:21873635
Ensembl
RGD
PMID:22164254, PMID:21873635 GO_REF:0000107 MGI:5315075, RGD:13792537 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931|MGI:1913904 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
G Tex12 testis expressed 12 acts_upstream_of_or_within ISO MGI:109542|MGI:3811722 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 8:54,991,501...54,999,454
Ensembl chr 8:54,992,841...54,994,871
JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in ISO (PMID:20129063) RGD PMID:20129063 NCBI chr13:110,219,276...110,257,345
Ensembl chr13:110,220,283...110,257,367
JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO
ISS
(PMID:22266823)
GO_REF:0000024
RGD
UniProt
PMID:22266823 GO_REF:0000024 NCBI chr 5:172,648,171...172,655,576
Ensembl chr 5:172,648,950...172,655,576
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 involved_in ISO (PMID:24695737) RGD PMID:24695737 NCBI chr 7:117,291,592...117,300,878
Ensembl chr 7:117,291,877...117,300,662
JBrowse link
G Pclaf PCNA clamp associated factor involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:23000965)
UniProt
RGD
PMID:23000965, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:71,514,281...71,526,182
Ensembl chr 8:71,514,281...71,526,182
JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:20129063)
UniProt
RGD
PMID:20129063, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 3:124,880,698...124,884,570
Ensembl chr 3:124,880,698...124,884,570
JBrowse link
G Poli DNA polymerase iota involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3055735 (MGI:3695544|PMID:17114294)
RGD PMID:17114294, PMID:21873635 MGI:3695544, RGD:13792537 NCBI chr18:65,749,107...65,768,805
Ensembl chr18:65,748,908...65,768,781
JBrowse link
G Poln DNA polymerase nu involved_in ISO (PMID:19908865), (PMID:20102227) RGD PMID:19908865 PMID:20102227 NCBI chr14:81,837,764...82,037,999
Ensembl chr14:81,858,737...82,037,747
JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO
IBA
(PMID:24240614), (PMID:24267451)
PMID:21873635
RGD PMID:24240614 PMID:24267451, PMID:21873635 RGD:13792537 NCBI chr16:48,863,385...48,900,409
Ensembl chr16:48,863,418...48,897,795
JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22681887), (PMID:22902628), (PMID:23042605), (PMID:23042607)
Ensembl
UniProt
RGD
PMID:22681887 PMID:22902628 PMID:23042605 PMID:23042607 GO_REF:0000024 GO_REF:0000107 NCBI chr19:57,649,901...57,657,158
Ensembl chr19:57,650,163...57,654,864
JBrowse link
G Vcp valosin-containing protein involved_in ISO
ISS
(PMID:23042605)
GO_REF:0000024
RGD
UniProt
PMID:23042605 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:99,401,775...99,425,739
Ensembl chr 6:99,402,360...99,424,019
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        cellular macromolecule metabolic process 8243
          DNA metabolic process 882
            DNA repair 488
              DNA synthesis involved in DNA repair 32
                DNA synthesis involved in UV-damage excision repair 3
                DNA synthesis involved in double-strand break repair via homologous recombination 0
                DNA synthesis involved in double-strand break repair via single-strand annealing 0
                meiotic DNA repair synthesis + 4
                translesion synthesis + 18
Path 2
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        cellular aromatic compound metabolic process 5636
          nucleobase-containing compound metabolic process 5420
            nucleic acid metabolic process 4930
              DNA metabolic process 882
                DNA repair 488
                  DNA synthesis involved in DNA repair 32
                    DNA synthesis involved in UV-damage excision repair 3
                    DNA synthesis involved in double-strand break repair via homologous recombination 0
                    DNA synthesis involved in double-strand break repair via single-strand annealing 0
                    meiotic DNA repair synthesis + 4
                    translesion synthesis + 18
paths to the root