ONTOLOGY REPORT - ANNOTATIONS |
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Term: | DNA double-strand break processing |
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Accession: | GO:0000729
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browse the term
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Definition: | The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang. |
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Atm |
ATM serine/threonine kinase |
involved_in |
ISO |
(PMID:10802669), (PMID:26240375) |
RGD |
PMID:10802669 PMID:26240375 |
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NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
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Blm |
BLM RecQ like helicase |
involved_in |
ISO |
(PMID:21325134) |
RGD |
PMID:21325134 |
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NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
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Dna2 |
DNA replication helicase/nuclease 2 |
involved_in |
ISS IEA |
GO_REF:0000024 GO_REF:0000107 |
UniProt Ensembl |
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GO_REF:0000024 GO_REF:0000107 |
NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
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Exd2 |
exonuclease 3'-5' domain containing 2 |
involved_in |
ISO |
(PMID:26807646) |
RGD |
PMID:26807646 |
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NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
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Exo1 |
exonuclease 1 |
involved_in |
IEA |
GO_REF:0000118 |
TreeGrafter |
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GO_REF:0000118 |
NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
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Mre11 |
MRE11 homolog, double strand break repair nuclease |
involved_in |
IEA ISO |
GO_REF:0000107 (PMID:23080121) |
Ensembl RGD |
PMID:23080121 |
GO_REF:0000107 |
NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
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Nbn |
nibrin |
involved_in |
IEA ISS ISO |
GO_REF:0000107 GO_REF:0000024 (PMID:16622404) |
Ensembl UniProt RGD |
PMID:16622404 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
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Rad50 |
RAD50 double strand break repair protein |
involved_in |
IEA ISO ISS |
GO_REF:0000107 (PMID:16622404), (PMID:21757780) GO_REF:0000024 |
Ensembl RGD UniProt |
PMID:16622404 PMID:21757780 |
GO_REF:0000024 GO_REF:0000107 |
NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
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Setmar |
SET domain and mariner transposase fusion gene |
involved_in |
ISO |
(PMID:21491884) |
RGD |
PMID:21491884 |
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NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
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Slc25a16 |
solute carrier family 25 member 16 |
involved_in |
IEA |
GO_REF:0000107 |
Ensembl |
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GO_REF:0000107 |
NCBI chr20:25,691,474...25,717,558
Ensembl chr20:25,662,055...25,716,319
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Smarcad1 |
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` |
involved_in |
ISO ISS |
(PMID:22960744) GO_REF:0000024 |
RGD UniProt |
PMID:22960744 |
GO_REF:0000024 |
NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
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Ube2n |
ubiquitin-conjugating enzyme E2N |
involved_in |
ISO |
(PMID:17349954) |
RGD |
PMID:17349954 |
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NCBI chr 7:30,154,330...30,184,373
Ensembl chr 7:30,154,616...30,184,355
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Ube2v2 |
ubiquitin conjugating enzyme E2 V2 |
involved_in |
ISO |
(PMID:17349954) |
RGD |
PMID:17349954 |
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NCBI chr11:85,304,528...85,338,430
Ensembl chr11:85,304,526...85,336,369
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AABR07031480.1 |
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involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
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ENSRNOG00000066166 |
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involved_in |
IEA |
GO_REF:0000118 |
TreeGrafter |
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GO_REF:0000118 |
Ensembl chr13:62,124,375...62,124,887
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ENSRNOG00000069305 |
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involved_in |
IEA |
GO_REF:0000118 |
TreeGrafter |
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GO_REF:0000118 |
Ensembl chr13:18,979,537...18,979,779
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Helq |
helicase, POLQ-like |
involved_in |
ISO |
(PMID:34937945) |
RGD |
PMID:34937945 |
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NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
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Rad52 |
RAD52 homolog, DNA repair protein |
involved_in acts_upstream_of_or_within |
ISO |
(MGI:5619739|PMID:22912580) (PMID:19506022) |
RGD |
PMID:19506022 PMID:22912580 |
MGI:5619739 |
NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
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Rbbp8 |
RB binding protein 8, endonuclease |
involved_in |
ISO IBA IEA |
(PMID:18716619), (PMID:19202191) GO_REF:0000033 GO_REF:0000118 |
RGD GO_Central TreeGrafter |
PMID:18716619 PMID:19202191 |
GO_REF:0000033 GO_REF:0000118 |
NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
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Rbbp8nl |
RBBP8 N-terminal like |
involved_in |
IEA |
GO_REF:0000118 |
TreeGrafter |
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GO_REF:0000118 |
NCBI chr 3:167,364,048...167,378,993
Ensembl chr 3:167,364,048...167,379,092
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Rnf138 |
ring finger protein 138 |
involved_in |
ISO ISS IBA IEA |
(PMID:26502057) GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 |
RGD UniProt GO_Central TreeGrafter |
PMID:26502057 |
GO_REF:0000024 GO_REF:0000033 GO_REF:0000118 |
NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930
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Rnf138l1 |
ring finger protein 138 like 1 |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr X:30,739,541...30,740,614
Ensembl chr X:30,739,413...30,740,613
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Slx1b |
SLX1 homolog B, structure-specific endonuclease subunit |
involved_in |
ISO |
(PMID:19595721) |
RGD |
PMID:19595721 |
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NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
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Slx4 |
SLX4 structure-specific endonuclease subunit |
involved_in |
ISO |
(PMID:19595721) |
RGD |
PMID:19595721 |
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NCBI chr10:11,526,623...11,549,313
Ensembl chr10:11,528,424...11,549,295
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Spo11 |
SPO11 initiator of meiotic double strand breaks |
involved_in |
IBA |
GO_REF:0000033 |
GO_Central |
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GO_REF:0000033 |
NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
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Brip1 |
BRCA1 interacting helicase 1 |
acts_upstream_of_or_within |
ISO |
MGI:4129733 (PMID:26490168) |
RGD |
PMID:26490168 |
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NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
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Six6os1 |
Six6 opposite strand transcript 1 |
involved_in |
ISO IBA |
(MGI:5822939|PMID:27796301) GO_REF:0000033 |
RGD GO_Central |
PMID:27796301 |
GO_REF:0000033 MGI:5822939 |
NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148
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Helb |
DNA helicase B |
involved_in |
ISO |
(PMID:26774285) (MGI:5766842|PMID:26774285) |
RGD |
PMID:26774285 |
MGI:5766842 |
NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
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