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ONTOLOGY REPORT - ANNOTATIONS

Term:endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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Accession:GO:0000479 term browser browse the term
Definition:Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae.


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endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:151,558,163...151,595,187
Ensembl chr 4:151,558,163...151,595,127 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:34365507)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:34365507 GO_REF:0000024 GO_REF:0000107 NCBI chr13:92,578,843...92,595,142
Ensembl chr13:92,578,874...92,595,140 		JBrowse link
G Tsr1 TSR1, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:59,760,420...59,771,868
Ensembl chr10:59,760,409...59,771,864 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in ISO (MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:3843427 NCBI chr 7:108,172,062...108,195,875
Ensembl chr 7:108,172,066...108,195,931 		JBrowse link
G Nol9 nucleolar protein 9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:162,546,522...162,566,625
Ensembl chr 5:162,546,541...162,566,191 		JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
G Utp23 UTP23, small subunit processome component acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 7:83,185,187...83,196,652
Ensembl chr 7:83,189,656...83,196,655 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G ENSRNOG00000063891 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:187,940,300...187,941,653 JBrowse link
G ENSRNOG00000066724 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 2:125,345,269...125,346,170 JBrowse link
G Fcf1 Fcf1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 6:104,617,780...104,629,643
Ensembl chr 6:104,617,770...104,629,643 		JBrowse link
G Kri1 KRI1 homolog involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 8:19,817,005...19,831,516
Ensembl chr 8:19,817,017...19,831,392 		JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 acts_upstream_of_or_within ISO (PMID:25190460) RGD PMID:25190460 NCBI chr 1:226,824,561...226,869,046
Ensembl chr 1:226,824,534...226,902,315 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr17:28,947,752...28,956,788
Ensembl chr17:28,947,734...28,956,788 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:9,733,486...9,735,119
Ensembl chr 5:9,733,091...9,735,140 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 8:46,606,877...46,607,131 JBrowse link
G ENSRNOG00000063891 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 1:187,940,300...187,941,653 JBrowse link
G ENSRNOG00000066724 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 2:125,345,269...125,346,170 JBrowse link
G LOC100359505 40S ribosomal protein S21-like involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:71,304,098...71,304,447
Ensembl chr  X:71,304,145...71,304,396 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 3:167,346,437...167,347,459
Ensembl chr 3:167,346,201...167,347,470 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:41,699,151...41,701,253
Ensembl chr17:41,699,147...41,701,259 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:29,243,853...29,252,220
Ensembl chr15:29,243,862...29,252,220 		JBrowse link
G Tbl3 transducin (beta)-like 3 involved_in IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:13,726,127...13,731,340
Ensembl chr10:13,726,129...13,731,372 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular component organization or biogenesis 7290
        cellular component biogenesis 3611
          ribonucleoprotein complex biogenesis 599
            ribosome biogenesis 435
              rRNA processing 272
                endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 20
                  cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                  endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 12
                  endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                  endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5
                  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              RNA metabolic process 4542
                ncRNA metabolic process 652
                  rRNA metabolic process 311
                    rRNA processing 272
                      endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 20
                        cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                        endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                        endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                        endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 12
                        endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                        endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 5
                        endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
paths to the root