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ONTOLOGY REPORT - ANNOTATIONS

Term:endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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Accession:GO:0000479 term browser browse the term
Definition:Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae.


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endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMS1 BMS1 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:39,757,627...39,806,401
Ensembl chr10:42,944,081...42,990,235 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:4,626,981...4,695,444
Ensembl chr 9:4,813,750...4,881,423 		JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:201,443,945...201,460,668
Ensembl chr 1:206,441,517...206,457,679 		JBrowse link
G TSR1 TSR1 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:2,314,567...2,328,518
Ensembl chr17:2,199,023...2,213,193 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:141,024,518...141,055,173
Ensembl chr 8:144,015,601...144,043,280 		JBrowse link
G NOL9 nucleolar protein 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:5,283,518...5,317,431
Ensembl chr 1:6,541,712...6,571,463 		JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:9742256 RGD:11535027 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:26,428,906...26,432,706
Ensembl chr 6:27,086,465...27,088,668 		JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr14:55,265,211...55,288,827
Ensembl chr14:74,112,253...74,133,348 		JBrowse link
G LOC100979193 leukotriene B4 receptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:5,076,270...5,085,596
Ensembl chr14:23,199,608...23,208,877 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 9:4,626,981...4,695,444
Ensembl chr 9:4,813,750...4,881,423 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:725,629...732,350
Ensembl chr16:2,061,199...2,067,715 		JBrowse link
G UTP23 UTP23 small subunit processome component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 8:113,441,014...113,462,103
Ensembl chr 8:115,984,167...116,066,606 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:26,428,906...26,432,706
Ensembl chr 6:27,086,465...27,088,668 		JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr14:55,265,211...55,288,827
Ensembl chr14:74,112,253...74,133,348 		JBrowse link
G KRI1 KRI1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:10,104,944...10,117,905
Ensembl chr19:10,767,384...10,780,254 		JBrowse link
G LOC100969204 small ribosomal subunit protein eS21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:5,420,697...5,421,116
Ensembl chr20:60,072,483...60,073,962 		JBrowse link
G LOC100979193 leukotriene B4 receptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:5,076,270...5,085,596
Ensembl chr14:23,199,608...23,208,877 		JBrowse link
G RCL1 RNA terminal phosphate cyclase like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 9:4,626,981...4,695,444
Ensembl chr 9:4,813,750...4,881,423 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:4,828,155...4,838,680
Ensembl chr 6:5,015,953...5,024,540 		JBrowse link
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:58,749,013...58,750,899
Ensembl chr20:60,072,483...60,073,962 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:62,972,274...62,974,004
Ensembl chr 8:64,638,713...64,639,810 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100969204 small ribosomal subunit protein eS21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:5,420,697...5,421,116
Ensembl chr20:60,072,483...60,073,962 		JBrowse link
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:58,749,013...58,750,899
Ensembl chr20:60,072,483...60,073,962 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:26,428,906...26,432,706
Ensembl chr 6:27,086,465...27,088,668 		JBrowse link
G LOC100979193 leukotriene B4 receptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:5,076,270...5,085,596
Ensembl chr14:23,199,608...23,208,877 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:725,629...732,350
Ensembl chr16:2,061,199...2,067,715 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16313
    cellular process 15397
      cellular component organization or biogenesis 6593
        cellular component biogenesis 3282
          ribonucleoprotein complex biogenesis 455
            ribosome biogenesis 330
              rRNA processing 208
                endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 17
                  cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                  endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9
                  endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                  endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
                  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
Path 2
Term Annotations click to browse term
  biological_process 16313
    metabolic process 10179
      cellular metabolic process 8945
        cellular aromatic compound metabolic process 5217
          nucleobase-containing compound metabolic process 4994
            nucleic acid metabolic process 4498
              RNA metabolic process 3942
                ncRNA metabolic process 556
                  rRNA metabolic process 245
                    rRNA processing 208
                      endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 17
                        cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
                        endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                        endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                        endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 9
                        endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                        endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
                        endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
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