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ONTOLOGY REPORT - ANNOTATIONS


Term:carbon catabolite regulation of transcription from RNA polymerase II promoter
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Accession:GO:0000429 term browser browse the term
Definition:A transcription regulation process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.
Synonyms:exact_synonym: regulation of transcription from RNA polymerase II promoter by carbon catabolites


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negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 involved_in ISO (PMID:10207113)
(MGI:5297786|PMID:16723356)
RGD PMID:10207113 PMID:16723356 MGI:5297786 NCBI chr 6:28,677,563...28,931,844
Ensembl chr 6:28,677,540...28,931,843
JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Usf1 upstream transcription factor 1 involved_in ISO (PMID:7852331)
(MGI:1330677|PMID:9890958)
RGD PMID:7852331 PMID:9890958 MGI:1330677 NCBI chr13:89,797,750...89,805,561
Ensembl chr13:89,797,800...89,805,558
JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting involved_in ISO
IEA
(PMID:7852331)
(MGI:1330677|PMID:9890958)
GO_REF:0000107
RGD
Ensembl
PMID:7852331 PMID:9890958 GO_REF:0000107 MGI:1330677 NCBI chr 1:89,371,798...89,383,005
Ensembl chr 1:89,371,794...89,382,463
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19633
    response to stimulus 10423
      response to chemical 6232
        response to nutrient 311
          cellular response to nutrient 63
            carbon catabolite regulation of transcription 5
              carbon catabolite regulation of transcription from RNA polymerase II promoter 4
                carbon catabolite activation of transcription from RNA polymerase II promoter + 4
                carbon catabolite repression of transcription from RNA polymerase II promoter + 0
                regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source + 0
                regulation of transcription from RNA polymerase II promoter by galactose + 1
                regulation of transcription from RNA polymerase II promoter by glucose + 3
Path 2
Term Annotations click to browse term
  biological_process 19633
    metabolic process 11911
      cellular metabolic process 10866
        cellular aromatic compound metabolic process 5616
          nucleobase-containing compound metabolic process 5404
            nucleic acid metabolic process 4915
              RNA metabolic process 4400
                regulation of RNA metabolic process 3564
                  regulation of RNA biosynthetic process 3278
                    regulation of nucleic acid-templated transcription 3273
                      regulation of transcription, DNA-templated 3271
                        carbon catabolite regulation of transcription 5
                          carbon catabolite regulation of transcription from RNA polymerase II promoter 4
                            carbon catabolite activation of transcription from RNA polymerase II promoter + 4
                            carbon catabolite repression of transcription from RNA polymerase II promoter + 0
                            regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source + 0
                            regulation of transcription from RNA polymerase II promoter by galactose + 1
                            regulation of transcription from RNA polymerase II promoter by glucose + 3
paths to the root