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ONTOLOGY REPORT - ANNOTATIONS

Term:carbon catabolite regulation of transcription from RNA polymerase II promoter
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Accession:GO:0000429 term browser browse the term
Definition:A transcription regulation process in which the presence of one carbon source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other carbon sources.
Synonyms:exact_synonym: regulation of transcription from RNA polymerase II promoter by carbon catabolites


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negative regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Sik2 salt-inducible kinase 2 involved_in ISO (PMID:21084751) RGD PMID:21084751 NCBI chr 8:51,225,543...51,325,343
Ensembl chr 8:51,225,543...51,325,415 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter by galactose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncoa1 nuclear receptor coactivator 1 involved_in ISO (PMID:10207113) RGD PMID:10207113 NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664 		JBrowse link
positive regulation of transcription from RNA polymerase II promoter by glucose term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 involved_in ISO (MGI:5142372|PMID:11875061) RGD PMID:11875061 MGI:5142372 NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326 		JBrowse link
G Kat2b lysine acetyltransferase 2B involved_in ISO (PMID:21084751) RGD PMID:21084751 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064 		JBrowse link
G Mlx MAX dimerization protein MLX involved_in ISO (PMID:14742444) RGD PMID:14742444 NCBI chr10:86,019,216...86,024,326
Ensembl chr10:86,019,588...86,032,350 		JBrowse link
G Mlxipl MLX interacting protein-like involved_in IEA
ISO		 GO_REF:0000107
MGI:1339639 (PMID:14742444), (PMID:15496471), (PMID:21471514)		 Ensembl
RGD		 PMID:14742444 PMID:15496471 PMID:21471514 GO_REF:0000107 NCBI chr12:21,541,608...21,577,120
Ensembl chr12:21,543,576...21,577,112 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA
ISO		 GO_REF:0000107
(PMID:21471514)		 Ensembl
RGD		 PMID:21471514 GO_REF:0000107 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Usf1 upstream transcription factor 1 involved_in ISO (MGI:1330677|PMID:9890958) RGD PMID:9890958 MGI:1330677 NCBI chr13:83,845,230...83,854,875
Ensembl chr13:83,822,035...83,854,885 		JBrowse link
G Usf2 upstream transcription factor 2, c-fos interacting involved_in IEA
ISO		 GO_REF:0000107
(MGI:1330677|PMID:9890958)		 Ensembl
RGD		 PMID:9890958 GO_REF:0000107 MGI:1330677 NCBI chr 1:86,174,703...86,185,942
Ensembl chr 1:86,174,703...86,185,617 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    cellular process 18525
      cellular response to stimulus 8714
        cellular response to chemical stimulus 2700
          cellular response to nutrient 84
            carbon catabolite regulation of transcription 10
              carbon catabolite regulation of transcription from RNA polymerase II promoter 9
                carbon catabolite activation of transcription from RNA polymerase II promoter + 8
                carbon catabolite repression of transcription from RNA polymerase II promoter + 0
                regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source + 0
                regulation of transcription from RNA polymerase II promoter by galactose + 1
                regulation of transcription from RNA polymerase II promoter by glucose + 8
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12288
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5736
          nucleic acid metabolic process 5148
            RNA metabolic process 4578
              RNA biosynthetic process 4308
                DNA-templated transcription 3497
                  regulation of DNA-templated transcription 3332
                    regulation of transcription by RNA polymerase II 2389
                      carbon catabolite regulation of transcription from RNA polymerase II promoter 9
                        carbon catabolite activation of transcription from RNA polymerase II promoter + 8
                        carbon catabolite repression of transcription from RNA polymerase II promoter + 0
                        regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source + 0
                        regulation of transcription from RNA polymerase II promoter by galactose + 1
                        regulation of transcription from RNA polymerase II promoter by glucose + 8
paths to the root