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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagy of mitochondrion
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Accession:GO:0000422 term browser browse the term
Definition:The autophagic process in which mitochondria are delivered to a type of vacuole and degraded in response to changing cellular conditions.
Synonyms:broad_synonym: mitochondrion degradation;   mitochondrion disassembly
 related_synonym: mitophagy

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autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg10 autophagy related 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:1,241,854...1,506,174
Ensembl chrNW_004936469:1,242,111...1,505,743 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183 		JBrowse link
G Atg3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23981124) MGI
TreeGrafter		 PMID:23981124 GO_REF:0000118 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511 		JBrowse link
G Capn10 calpain 10 ISO RGD PMID:22568896 RGD:7247732 NCBI chrNW_004936745:1,029,514...1,039,524 JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936520:514,747...527,576
Ensembl chrNW_004936520:514,448...527,682 		JBrowse link
G Fbxl4 F-box and leucine rich repeat protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32525278) MGI
Ensembl		 PMID:32525278 GO_REF:0000107 NCBI chrNW_004936651:530,296...609,443
Ensembl chrNW_004936651:530,197...609,417 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,261,442...7,276,779
Ensembl chrNW_004936492:7,261,009...7,276,943 		JBrowse link
G Fis1 fission, mitochondrial 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936543:1,112,746...1,116,521
Ensembl chrNW_004936543:1,112,742...1,116,518 		JBrowse link
G Fundc1 FUN14 domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22267086) MGI
Ensembl
TreeGrafter		 PMID:22267086 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936502:10,643,172...10,657,118
Ensembl chrNW_004936502:10,643,071...10,657,134 		JBrowse link
G Fundc2 FUN14 domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936927:304,162...318,271
Ensembl chrNW_004936927:304,197...318,271 		JBrowse link
G LOC101955911 FUN14 domain-containing protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936664:3,188,124...3,189,114 JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22267086) MGI
Ensembl		 PMID:22267086 GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:19783904 RGD:10059673 NCBI chrNW_004936477:4,881,230...5,488,208
Ensembl chrNW_004936477:5,199,881...5,488,226 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721 		JBrowse link
G Slc25a46 solute carrier family 25 member 46 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:28934388) MGI
Ensembl		 PMID:28934388 GO_REF:0000107 NCBI chrNW_004936531:5,177,750...5,201,362
Ensembl chrNW_004936531:5,177,739...5,203,955 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835 		JBrowse link
G Snx7 sorting nexin 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:874,188...902,690
Ensembl chrNW_004936769:826,615...904,034 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004936631:30,109...101,748
Ensembl chrNW_004936631:30,199...98,511 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:526,467...531,278
Ensembl chrNW_004936842:524,182...530,540 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:11,106,030...11,531,854
Ensembl chrNW_004936504:11,108,092...11,531,861 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232 		JBrowse link
G Atg14 autophagy related 14 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917 		JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:6,641,192...6,691,685
Ensembl chrNW_004936499:6,640,957...6,691,995 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936692:439,475...532,633
Ensembl chrNW_004936692:439,280...532,657 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Atg7 autophagy related 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31266807) MGI
Ensembl		 PMID:31266807 GO_REF:0000107 NCBI chrNW_004936807:601,759...678,531
Ensembl chrNW_004936807:601,730...676,966 		JBrowse link
G Becn1 beclin 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Becn2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:8,532,991...8,534,271
Ensembl chrNW_004936526:8,533,009...8,534,271 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:18,449,371...18,460,435
Ensembl chrNW_004936486:18,448,494...18,455,927 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936580:1,022,762...1,038,020
Ensembl chrNW_004936580:1,022,762...1,034,984 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:10,746,687...10,769,304
Ensembl chrNW_004936495:10,745,923...10,773,199 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:10,643,172...10,657,118
Ensembl chrNW_004936502:10,643,071...10,657,134 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
MGI		 PMID:23707074 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G LOC101977755 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936559:7,343,173...7,356,151 JBrowse link
G LOC106144638 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936559:7,318,148...7,328,410 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004936689:429,907...1,080,226
Ensembl chrNW_004936689:430,293...1,079,838 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936657:3,504,940...3,517,654
Ensembl chrNW_004936657:3,504,913...3,517,708 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936543:7,928,250...7,957,436
Ensembl chrNW_004936543:7,928,217...7,969,914 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936762:99,335...137,833
Ensembl chrNW_004936762:99,293...137,874 		JBrowse link
G Phb2 prohibitin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:854,493...859,182
Ensembl chrNW_004936709:854,698...858,851 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA
ISO		 Ensembl
RGD		 PMID:25154397 GO_REF:0000107 RGD:12904014 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24949970) MGI
Ensembl		 PMID:24949970 GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Retreg1 reticulophagy regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31446166) Ensembl
MGI		 PMID:31446166 GO_REF:0000107 NCBI chrNW_004936480:19,114,753...19,253,346
Ensembl chrNW_004936480:19,114,768...19,253,352 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936518:880,781...897,655
Ensembl chrNW_004936518:880,669...898,417 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chrNW_004936641:360,941...366,496 JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936809:1,160,265...1,168,956
Ensembl chrNW_004936809:1,160,247...1,171,097 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080 		JBrowse link
mitophagy by internal vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata18 spermatogenesis associated 18 involved_in ISO (PMID:21264228) UniProt PMID:21264228 NCBI chrNW_004936482:15,178,667...15,262,897 JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004936530:9,089,478...9,264,563
Ensembl chrNW_004936530:9,089,476...9,264,592 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Rnf41 ring finger protein 41 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24949970) Ensembl
MGI		 PMID:24949970 GO_REF:0000107 NCBI chrNW_004936646:605,302...630,645
Ensembl chrNW_004936646:605,302...631,022 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Tspo translocator protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936718:992,301...995,172
Ensembl chrNW_004936718:992,301...995,995 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chrNW_004936769:874,188...902,690
Ensembl chrNW_004936769:826,615...904,034 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:741,718...746,016
Ensembl chrNW_004936556:741,718...749,090 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:22,661,899...22,842,144
Ensembl chrNW_004936471:22,661,447...22,842,150 		JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 ISO RGD PMID:23698117 RGD:11561968 NCBI chrNW_004936486:18,449,371...18,460,435
Ensembl chrNW_004936486:18,448,494...18,455,927 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:7,261,442...7,276,779
Ensembl chrNW_004936492:7,261,009...7,276,943 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Cers1 ceramide synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,442,978...2,467,184
Ensembl chrNW_004936596:2,442,991...2,467,184 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,247,584...12,259,962
Ensembl chrNW_004936504:12,245,776...12,259,851 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:389,913...430,783
Ensembl chrNW_004936750:389,845...432,460 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,261,442...7,276,779
Ensembl chrNW_004936492:7,261,009...7,276,943 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G LOC101966195 huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071 		JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:21102437), (PMID:32939830)
(PMID:33510463)		 UniProt PMID:21102437 PMID:32939830 PMID:33510463 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:3,708,069...3,742,845
Ensembl chrNW_004936475:3,713,362...3,745,982 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO
IEA		 RGD
Ensembl		 PMID:28608965 GO_REF:0000107 RGD:13432560 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:4,130,461...4,135,046
Ensembl chrNW_004936554:4,130,459...4,135,044 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in ISO (PMID:31618756) UniProt PMID:31618756 NCBI chrNW_004936479:10,432,172...10,435,154 JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chrNW_004936501:328,767...330,963
Ensembl chrNW_004936501:326,451...330,983 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:10,330,666...10,340,268
Ensembl chrNW_004936479:10,330,632...10,340,367 		JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:955,081...1,194,200
Ensembl chrNW_004936474:955,040...1,195,859 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,396,416...12,399,760
Ensembl chrNW_004936474:12,396,023...12,401,023 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:711,165...721,207
Ensembl chrNW_004936659:711,117...721,260 		JBrowse link
G Gba1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
ARUK-UCL		 PMID:23707074 GO_REF:0000107 NCBI chrNW_004936580:4,715,869...4,720,752
Ensembl chrNW_004936580:4,715,408...4,720,798 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Hk2 hexokinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:1,054,143...1,113,425
Ensembl chrNW_004936556:1,054,021...1,113,450 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936751:478,978...622,818
Ensembl chrNW_004936751:478,300...622,820 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,479,640...6,486,080
Ensembl chrNW_004936474:6,477,504...6,486,660 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:30,787...36,952
Ensembl chrNW_004936478:30,666...37,062 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:1,220,075...1,249,579
Ensembl chrNW_004936647:1,230,450...1,249,814 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chrNW_004936481:18,274,158...18,330,136
Ensembl chrNW_004936481:18,274,154...18,330,173 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936757:499,485...523,494
Ensembl chrNW_004936757:499,147...523,541 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936475:10,030,408...10,073,576
Ensembl chrNW_004936475:10,033,717...10,075,511 		JBrowse link
G Cttn cortactin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:481,234...503,857
Ensembl chrNW_004936599:481,243...501,743 		JBrowse link
G Dnm1l dynamin 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:3,576,357...3,632,423
Ensembl chrNW_004936607:3,576,392...3,632,554 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,728,089...2,735,718
Ensembl chrNW_004936596:2,728,114...2,735,317 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936631:3,909,046...3,915,939
Ensembl chrNW_004936631:3,911,693...3,915,560 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:266,462...277,256
Ensembl chrNW_004936706:269,126...277,256 		JBrowse link
G Parl presenilin associated rhomboid like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:5,945,765...5,992,972
Ensembl chrNW_004936578:5,945,635...5,993,143 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,408,669...1,419,717
Ensembl chrNW_004936741:1,406,521...1,419,776 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936492:115,923...174,614
Ensembl chrNW_004936492:115,821...174,775 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004936594:3,194,842...3,228,701
Ensembl chrNW_004936594:3,194,482...3,228,748 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:1,220,075...1,249,579
Ensembl chrNW_004936647:1,230,450...1,249,814 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:757,500...778,416
Ensembl chrNW_004936721:758,181...778,053 		JBrowse link
G Mfn2 mitofusin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:767,754...795,258
Ensembl chrNW_004936474:767,671...796,556 		JBrowse link
G Optn optineurin involved_in ISO (PMID:25294927) ParkinsonsUK-UCL PMID:25294927 NCBI chrNW_004937104:73,340...113,179 JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16037
    cellular process 15650
      process utilizing autophagic mechanism 515
        autophagy 515
          autophagy of mitochondrion 103
            micromitophagy 0
            mitophagy + 80
            mitophagy by internal vacuole formation 1
            negative regulation of autophagy of mitochondrion + 9
            positive regulation of autophagy of mitochondrion + 27
            regulation of autophagy of mitochondrion + 48
Path 2
Term Annotations click to browse term
  biological_process 16037
    cellular process 15650
      metabolic process 9980
        catabolic process 2417
          autophagy 515
            autophagy of mitochondrion 103
              micromitophagy 0
              mitophagy + 80
              mitophagy by internal vacuole formation 1
              negative regulation of autophagy of mitochondrion + 9
              positive regulation of autophagy of mitochondrion + 27
              regulation of autophagy of mitochondrion + 48
paths to the root