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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagy of mitochondrion
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Accession:GO:0000422 term browser browse the term
Definition:The autophagic process in which mitochondria are delivered to a type of vacuole and degraded in response to changing cellular conditions.
Synonyms:broad_synonym: mitochondrion degradation;   mitochondrion disassembly
 related_synonym: mitophagy

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autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg10 autophagy related 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:2,381,131...2,663,640
Ensembl chrNW_004624743:2,381,038...2,649,322 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:35,978,595...36,004,900 JBrowse link
G Atg5 autophagy related 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23981124) MGI
TreeGrafter		 PMID:23981124 GO_REF:0000118 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G Capn10 calpain 10 ISO RGD PMID:22568896 RGD:7247732 NCBI chrNW_004624847:4,911,052...4,922,549
Ensembl chrNW_004624847:4,911,737...4,922,192 		JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624830:5,173,410...5,188,123
Ensembl chrNW_004624830:5,173,411...5,188,098 		JBrowse link
G Fbxl4 F-box and leucine rich repeat protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32525278) MGI
Ensembl		 PMID:32525278 GO_REF:0000107 NCBI chrNW_004624810:6,172,807...6,238,045
Ensembl chrNW_004624810:6,185,748...6,239,481 		JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO (PMID:23933751) UniProt PMID:23933751 NCBI chrNW_004624750:1,977,666...1,997,408
Ensembl chrNW_004624750:1,977,761...1,997,231 		JBrowse link
G Fis1 fission, mitochondrial 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624740:16,052,777...16,056,438
Ensembl chrNW_004624740:16,052,820...16,057,098 		JBrowse link
G Fundc1 FUN14 domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22267086) MGI
TreeGrafter		 PMID:22267086 GO_REF:0000118 NCBI chrNW_004624887:626,321...641,296
Ensembl chrNW_004624887:626,321...641,293 		JBrowse link
G Fundc2 FUN14 domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624963:223,145...250,841
Ensembl chrNW_004624963:226,564...251,113 		JBrowse link
G LOC101703150 ubiquitin-like-conjugating enzyme ATG3 pseudogene involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624901:1,933,230...1,934,108 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22267086) MGI
Ensembl		 PMID:22267086 GO_REF:0000107 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20798600), (PMID:23933751), (PMID:24896179) UniProt PMID:20798600 PMID:23933751 PMID:24896179 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:19783904 RGD:10059673 NCBI chrNW_004624755:7,826,219...8,460,746
Ensembl chrNW_004624755:8,375,596...8,465,297 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:25621951)
(PMID:19029340), (PMID:23933751), (PMID:24896179)		 UniProt PMID:19029340 PMID:23933751 PMID:24896179 PMID:25621951 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Slc25a46 solute carrier family 25 member 46 acts_upstream_of_or_within ISO (PMID:28934388) MGI PMID:28934388 NCBI chrNW_004624743:28,584,209...28,613,397 JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:53,677...59,807
Ensembl chrNW_004624894:54,683...59,716 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 involved_in ISO (PMID:25621951)
(PMID:24896179)		 UniProt PMID:24896179 PMID:25621951 NCBI chrNW_004624747:12,219,139...12,248,614
Ensembl chrNW_004624747:12,184,297...12,250,687 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004624765:12,971,867...13,091,446
Ensembl chrNW_004624765:12,998,315...13,091,370 		JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624817:7,993,830...7,998,729
Ensembl chrNW_004624817:7,991,572...7,997,963 		JBrowse link
G Arhgap26 Rho GTPase activating protein 26 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chrNW_004624774:1,978,049...2,443,632
Ensembl chrNW_004624774:1,977,963...2,442,410 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg14 autophagy related 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:8,336,123...8,407,354
Ensembl chrNW_004624803:8,337,042...8,407,222 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:31,061,869...31,130,786
Ensembl chrNW_004624742:31,060,376...31,127,740 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 involved_in ISO (PMID:19279012)
(PMID:20080761)		 ParkinsonsUK-UCL PMID:19279012 PMID:20080761 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Bcl2l13 BCL2 like 13 acts_upstream_of_or_within ISO (PMID:31266807) MGI PMID:31266807 NCBI chrNW_004624735:9,594,134...9,692,967
Ensembl chrNW_004624735:9,599,383...9,687,277 		JBrowse link
G Becn1 beclin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Bnip3 BCL2 interacting protein 3 involved_in ISO (PMID:22505714) FlyBase PMID:22505714 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in ISO (PMID:35604110) DisProt PMID:35604110 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Ctsk cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624772:19,013,189...19,026,756
Ensembl chrNW_004624772:19,015,835...19,025,588 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004624734:33,624,246...33,640,667
Ensembl chrNW_004624734:33,621,782...33,640,549 		JBrowse link
G Fundc1 FUN14 domain containing 1 involved_in ISO (PMID:34244144) FlyBase PMID:34244144 NCBI chrNW_004624887:626,321...641,296
Ensembl chrNW_004624887:626,321...641,293 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G LOC101705523 protein NipSnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624758:6,602,220...6,614,722 JBrowse link
G LOC101713661 beclin-2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:8,779,379...8,780,647 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624858:1,797,123...2,471,017
Ensembl chrNW_004624858:1,797,123...2,471,867 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28017329)
(PMID:19279012)		 UniProt
ParkinsonsUK-UCL		 PMID:19279012 PMID:28017329 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Nipsnap1 nipsnap homolog 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624747:5,875,123...5,893,668
Ensembl chrNW_004624747:5,874,226...5,894,031 		JBrowse link
G Nipsnap2 nipsnap homolog 2 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624740:8,176,682...8,207,790
Ensembl chrNW_004624740:8,176,656...8,209,029 		JBrowse link
G Nipsnap3a nipsnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624758:6,634,215...6,651,379
Ensembl chrNW_004624758:6,633,075...6,651,937 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase involved_in ISO (PMID:33406421) ARUK-UCL PMID:33406421 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177 		JBrowse link
G Phb2 prohibitin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624860:3,599,435...3,605,016
Ensembl chrNW_004624860:3,599,687...3,604,872 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:33406421)
(PMID:38081847)		 ARUK-UCL
RGD
UniProt		 PMID:25154397 PMID:33406421 PMID:38081847 RGD:12904014 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 ISO PMID:20457763
(PMID:23685073), (PMID:28017329)
(PMID:24949970)		 ParkinsonsUK-UCL
UniProt
MGI		 PMID:20457763 PMID:23685073 PMID:24949970 PMID:28017329 RGD:10047224 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Retreg1 reticulophagy regulator 1 acts_upstream_of_or_within ISO (PMID:31446166) MGI PMID:31446166 NCBI chrNW_004624751:13,377,583...13,502,144
Ensembl chrNW_004624751:13,376,502...13,501,918 		JBrowse link
G Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624759:13,050,001...13,067,231
Ensembl chrNW_004624759:13,050,315...13,068,155 		JBrowse link
G Spata33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chrNW_004624746:294,427...302,393
Ensembl chrNW_004624746:294,432...302,349 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:42,689,454...42,700,916
Ensembl chrNW_004624733:42,691,841...42,700,916 		JBrowse link
G Tafazzin tafazzin, phospholipid-lysophospholipid transacylase involved_in ISO (PMID:33096711)
(PMID:25919711)		 UniProt PMID:25919711 PMID:33096711 NCBI chrNW_004624946:871,618...885,331
Ensembl chrNW_004624946:871,901...879,508 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624860:1,416,419...1,455,953
Ensembl chrNW_004624860:1,417,131...1,457,717 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
mitophagy by internal vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata18 spermatogenesis associated 18 involved_in ISO (PMID:21264228) UniProt PMID:21264228 NCBI chrNW_004624761:17,578,125...17,642,356 JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec16a C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624824:8,174,653...8,400,760
Ensembl chrNW_004624824:8,174,610...8,400,723 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Rnf41 ring finger protein 41 acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chrNW_004624802:11,781,748...11,811,412
Ensembl chrNW_004624802:11,781,725...11,810,402 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624860:1,416,419...1,455,953
Ensembl chrNW_004624860:1,417,131...1,457,717 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:22044588) MGI PMID:22044588 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Tspo translocator protein involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chrNW_004624752:5,814,784...5,820,250
Ensembl chrNW_004624752:5,814,784...5,820,141 		JBrowse link
G Usp30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chrNW_004624747:12,219,139...12,248,614
Ensembl chrNW_004624747:12,184,297...12,250,687 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:24709290) ParkinsonsUK-UCL PMID:24709290 NCBI chrNW_004624749:28,980,375...28,983,719
Ensembl chrNW_004624749:28,980,362...28,983,869 		JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C involved_in ISO (PMID:26942284) ParkinsonsUK-UCL PMID:26942284 NCBI chrNW_004624781:10,259,971...10,414,421
Ensembl chrNW_004624781:10,259,976...10,413,278 		JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bnip3 BCL2 interacting protein 3 ISO RGD PMID:23698117 RGD:11561968 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Fbxo7 F-box protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624750:1,977,666...1,997,408
Ensembl chrNW_004624750:1,977,761...1,997,231 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:30217973) UniProt PMID:30217973 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Cers1 ceramide synthase 1 involved_in ISO (PMID:22922758) UniProt PMID:22922758 NCBI chrNW_004624908:1,937,007...1,949,780
Ensembl chrNW_004624908:1,941,393...1,949,760 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004624774:1,135,680...1,154,628
Ensembl chrNW_004624774:1,136,731...1,150,625 		JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in ISO (PMID:38340717) UniProt PMID:38340717 NCBI chrNW_004624740:31,223,583...31,306,749
Ensembl chrNW_004624740:31,274,483...31,306,430 		JBrowse link
G Fbxo7 F-box protein 7 involved_in ISO PMID:26310625
(PMID:26310625)		 ParkinsonsUK-UCL PMID:26310625 RGD:11536096 NCBI chrNW_004624750:1,977,666...1,997,408
Ensembl chrNW_004624750:1,977,761...1,997,231 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705 		JBrowse link
G Htt huntingtin involved_in ISO (PMID:25686248) ParkinsonsUK-UCL PMID:25686248 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:21102437), (PMID:32939830)
(PMID:33510463)		 UniProt PMID:21102437 PMID:32939830 PMID:33510463 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in ISO (PMID:31919280) UniProt PMID:31919280 NCBI chrNW_004624757:5,956,873...6,000,052
Ensembl chrNW_004624757:5,958,486...6,000,103 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:26310625) RGD
ParkinsonsUK-UCL		 PMID:26310625 PMID:28608965 RGD:13432560 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Slc25a4 solute carrier family 25 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624769:15,989,527...15,993,609
Ensembl chrNW_004624769:15,989,547...15,997,680 		JBrowse link
G Slc25a5 solute carrier family 25 member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624895:3,472,810...3,475,713
Ensembl chrNW_004624895:3,472,791...3,477,568 		JBrowse link
G Stub1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chrNW_004624913:1,491,873...1,494,249
Ensembl chrNW_004624913:1,491,991...1,494,249 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in ISO (PMID:23685073) UniProt PMID:23685073 NCBI chrNW_004624895:3,544,410...3,553,981 JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D involved_in ISO (PMID:29307555) UniProt PMID:29307555 NCBI chrNW_004624818:632,276...885,450
Ensembl chrNW_004624818:632,278...885,445 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5if1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chrNW_004624764:12,068,518...12,070,542
Ensembl chrNW_004624764:12,068,638...12,072,190 		JBrowse link
G Cdc37 cell division cycle 37, HSP90 cochaperone involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chrNW_004624828:2,523,761...2,533,387
Ensembl chrNW_004624828:2,521,272...2,535,475 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Hk2 hexokinase 2 involved_in ISO (PMID:23962723) ParkinsonsUK-UCL PMID:23962723 NCBI chrNW_004624749:28,618,146...28,718,852
Ensembl chrNW_004624749:28,618,030...28,689,794 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISO (PMID:30217973) CACAO PMID:30217973 NCBI chrNW_004624909:745,141...891,421
Ensembl chrNW_004624909:745,651...859,233 		JBrowse link
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:5,560,071...5,566,763
Ensembl chrNW_004624764:5,557,560...5,586,964 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:20871098) ParkinsonsUK-UCL PMID:20871098 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:20871098), (PMID:23212910)
(PMID:20457763)		 ParkinsonsUK-UCL PMID:20457763 PMID:20871098 PMID:23212910 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Tomm7 translocase of outer mitochondrial membrane 7 involved_in ISO (PMID:24270810) ParkinsonsUK-UCL PMID:24270810 NCBI chrNW_004624739:7,854,226...7,863,387
Ensembl chrNW_004624739:7,853,621...7,864,757 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in ISO (PMID:32047033) UniProt PMID:32047033 NCBI chrNW_004624733:38,183,376...38,210,368
Ensembl chrNW_004624733:38,184,016...38,210,478 		JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chrNW_004624826:5,844,868...5,897,541
Ensembl chrNW_004624826:5,845,001...5,897,497 		JBrowse link
G Bnip3l BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:21,284,165...21,309,957
Ensembl chrNW_004624758:21,284,167...21,310,398 		JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624746:28,012,543...28,064,610
Ensembl chrNW_004624746:28,012,556...28,060,413 		JBrowse link
G Cttn cortactin involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004624767:16,842,341...16,884,449
Ensembl chrNW_004624767:16,847,459...16,880,183 		JBrowse link
G Dnm1l dynamin 1 like involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624778:3,391,690...3,475,548 JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624858:3,778,842...3,974,351
Ensembl chrNW_004624858:3,775,795...3,873,336 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 involved_in ISO (PMID:28381481), (PMID:31908024) DisProt PMID:28381481 PMID:31908024 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624907:511,919...522,106
Ensembl chrNW_004624907:511,889...522,168 		JBrowse link
G Parl presenilin associated rhomboid like involved_in ISO (PMID:21355049) ParkinsonsUK-UCL PMID:21355049 NCBI chrNW_004624730:72,642,828...72,683,820
Ensembl chrNW_004624730:72,642,925...72,683,820 		JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624849:3,602,103...3,623,922
Ensembl chrNW_004624849:3,602,261...3,623,465 		JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624752:6,815,075...6,871,674
Ensembl chrNW_004624752:6,816,468...6,871,567 		JBrowse link
G Usp36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chrNW_004624801:8,177,164...8,214,169
Ensembl chrNW_004624801:8,176,902...8,211,592 		JBrowse link
G Vdac1 voltage dependent anion channel 1 involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chrNW_004624733:38,183,376...38,210,368
Ensembl chrNW_004624733:38,184,016...38,210,478 		JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac6 histone deacetylase 6 involved_in ISO (PMID:20457763) ParkinsonsUK-UCL PMID:20457763 NCBI chrNW_004624893:608,744...627,600
Ensembl chrNW_004624893:608,540...628,580 		JBrowse link
G Mfn2 mitofusin 2 involved_in ISO (PMID:23620051) ParkinsonsUK-UCL PMID:23620051 NCBI chrNW_004624818:1,041,371...1,065,061
Ensembl chrNW_004624818:1,041,369...1,065,023 		JBrowse link
G Optn optineurin involved_in ISO (PMID:25294927) ParkinsonsUK-UCL PMID:25294927 NCBI chrNW_004624805:5,683,095...5,717,558
Ensembl chrNW_004624805:5,683,021...5,721,336 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19029340) ParkinsonsUK-UCL PMID:19029340 NCBI chrNW_004624855:430,148...1,992,121
Ensembl chrNW_004624855:430,260...1,989,747 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15172
    cellular process 14790
      process utilizing autophagic mechanism 500
        autophagy 500
          autophagy of mitochondrion 99
            micromitophagy 0
            mitophagy + 81
            mitophagy by internal vacuole formation 1
            negative regulation of autophagy of mitochondrion + 9
            positive regulation of autophagy of mitochondrion + 27
            regulation of autophagy of mitochondrion + 48
Path 2
Term Annotations click to browse term
  biological_process 15172
    cellular process 14790
      metabolic process 9450
        catabolic process 2288
          autophagy 500
            autophagy of mitochondrion 99
              micromitophagy 0
              mitophagy + 81
              mitophagy by internal vacuole formation 1
              negative regulation of autophagy of mitochondrion + 9
              positive regulation of autophagy of mitochondrion + 27
              regulation of autophagy of mitochondrion + 48
paths to the root