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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagy of mitochondrion
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Accession:GO:0000422 term browser browse the term
Definition:The autophagic process in which mitochondria are delivered to a type of vacuole and degraded in response to changing cellular conditions.
Synonyms:broad_synonym: mitochondrion degradation;   mitochondrion disassembly
 related_synonym: mitophagy

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autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG10 autophagy related 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:76,092,887...76,378,175
Ensembl chr 4:76,092,832...76,377,403 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:19,073,545...19,087,603
Ensembl chr23:19,072,401...19,087,625 		JBrowse link
G ATG2A autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,316,567...9,339,244
Ensembl chr 1:9,316,675...9,339,265 		JBrowse link
G ATG2B autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:74,163,750...74,246,131
Ensembl chr24:74,163,442...74,246,116 		JBrowse link
G ATG3 autophagy related 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:68,227,772...68,256,555
Ensembl chr22:68,228,203...68,257,503 		JBrowse link
G ATG5 autophagy related 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:67,482,538...67,619,201
Ensembl chr13:67,482,595...67,617,902 		JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23981124) MGI
TreeGrafter		 PMID:23981124 GO_REF:0000118 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G ATG9A autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:105,123,039...105,133,057
Ensembl chr10:105,124,412...105,131,409 		JBrowse link
G ATG9B autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:119,197,387...119,209,578
Ensembl chr21:119,198,125...119,206,599 		JBrowse link
G CAPN10 calpain 10 ISO RGD PMID:22568896 RGD:7247732 NCBI chr10:126,613,722...126,626,388 JBrowse link
G CISD2 CDGSH iron sulfur domain 2 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:50,968,061...50,988,725
Ensembl chr 7:50,968,111...50,988,714 		JBrowse link
G FBXL4 F-box and leucine rich repeat protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32525278) MGI
Ensembl		 PMID:32525278 GO_REF:0000107 NCBI chr13:74,916,756...74,993,959
Ensembl chr13:74,916,869...74,997,462 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:15,300,135...15,324,256
Ensembl chr19:15,300,158...15,323,956 		JBrowse link
G FIS1 fission, mitochondrial 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:11,934,848...11,940,230
Ensembl chr28:11,934,821...11,941,901 		JBrowse link
G FUNDC1 FUN14 domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22267086) MGI
TreeGrafter		 PMID:22267086 GO_REF:0000118 NCBI chr  X:41,685,945...41,705,037 JBrowse link
G FUNDC2 FUN14 domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:129,315,315...129,342,395
Ensembl chr  X:129,315,465...129,342,193 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22267086) MGI
Ensembl		 PMID:22267086 GO_REF:0000107 NCBI chr 2:38,857,235...38,858,955
Ensembl chr 2:38,857,299...38,858,505 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:111,902,135...111,919,082
Ensembl chr20:111,902,765...111,919,069 		JBrowse link
G PPARGC1A PPARG coactivator 1 alpha ISO RGD PMID:19783904 RGD:10059673 NCBI chr27:25,882,385...26,563,530
Ensembl chr27:26,465,499...26,564,582 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19029340), (PMID:23933751), (PMID:24896179)
(PMID:25621951)		 UniProt PMID:19029340 PMID:23933751 PMID:24896179 PMID:25621951 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:89,318,323...90,034,758 JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:48,726,551...48,818,027
Ensembl chr 8:48,724,393...48,817,928 		JBrowse link
G SLC25A46 solute carrier family 25 member 46 acts_upstream_of_or_within ISO (PMID:28934388) MGI PMID:28934388 NCBI chr23:14,113,276...14,139,758
Ensembl chr23:14,113,375...14,136,424 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:26,650,088...26,774,395
Ensembl chr12:26,656,221...26,774,009 		JBrowse link
G SNX7 sorting nexin 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:34,531,399...34,639,958
Ensembl chr20:34,531,151...34,639,107 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:127,276,172...127,304,270
Ensembl chr11:127,276,210...127,304,497 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:18,335,095...18,434,031
Ensembl chr16:18,335,235...18,433,578 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:8,628,289...8,635,465
Ensembl chr26:8,628,454...8,636,092 		JBrowse link
G USP30 ubiquitin specific peptidase 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:104,254,923...104,292,373
Ensembl chr11:104,255,012...104,290,273 		JBrowse link
mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI2 abl interactor 2 involved_in ISO (PMID:38081847) UniProt PMID:38081847 NCBI chr10:89,074,333...89,314,144
Ensembl chr10:89,075,798...89,181,235 		JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,777,807...18,932,784
Ensembl chr 1:18,734,926...18,932,785 		JBrowse link
G ARFIP2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:58,346,479...58,351,433
Ensembl chr 1:58,347,495...58,353,749 		JBrowse link
G ARHGAP26 Rho GTPase activating protein 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:45,399,159...45,860,331
Ensembl chr23:45,399,259...45,849,040 		JBrowse link
G ATG13 autophagy related 13 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,651,872...18,712,395
Ensembl chr 1:18,652,998...18,712,482 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:32,560,580...32,605,336
Ensembl chr24:32,559,955...32,605,282 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:95,936,385...96,011,541
Ensembl chr  X:95,983,662...96,010,578 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr10:127,689,577...127,720,232 JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr10:127,689,882...127,720,226 JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:70,209,536...70,291,750
Ensembl chr20:70,208,716...70,291,718 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:9,555,792...9,565,295
Ensembl chr 6:9,555,780...9,568,814 		JBrowse link
G ATG5 autophagy related 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:67,482,538...67,619,201
Ensembl chr13:67,482,595...67,617,902 		JBrowse link
G ATG7 autophagy related 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G BECN1 beclin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:63,469,187...63,482,627
Ensembl chr16:63,469,192...63,485,322 		JBrowse link
G BECN2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:79,042,985...79,044,787
Ensembl chr25:79,043,385...79,044,707 		JBrowse link
G BNIP3 BCL2 interacting protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:124,570,958...124,586,002
Ensembl chr 9:124,568,695...124,585,980 		JBrowse link
G CLEC16A C-type lectin domain containing 16A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:10,420,866...10,658,370
Ensembl chr 5:10,420,931...10,658,507 		JBrowse link
G CTSK cathepsin K involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190
G EIF2S1 eukaryotic translation initiation factor 2 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:44,599,017...44,623,723
Ensembl chr24:44,598,287...44,623,298 		JBrowse link
G FUNDC1 FUN14 domain containing 1 involved_in ISO (PMID:34244144) FlyBase PMID:34244144 NCBI chr  X:41,685,945...41,705,037 JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chr20:8,598,110...8,631,517
Ensembl chr20:8,598,628...8,630,990 		JBrowse link
G LOC103232243 prohibitin-2-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:67,716,566...67,718,426 JBrowse link
G LOC119623630 lysosomal acid glucosylceramidase involved_in IEA Ensembl GO_REF:0000107
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 7:96,714,031...97,606,153 JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:28017329)
(PMID:19279012)		 UniProt
ParkinsonsUK-UCL		 PMID:19279012 PMID:28017329 NCBI chr 5:72,762,428...72,774,204
Ensembl chr 5:72,763,050...72,772,770 		JBrowse link
G NIPSNAP1 nipsnap homolog 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr19:12,429,036...12,454,532
Ensembl chr19:12,428,739...12,454,297 		JBrowse link
G NIPSNAP2 nipsnap homolog 2 involved_in ISO (PMID:30982665) UniProt PMID:30982665 NCBI chr21:2,773,970...2,810,977 JBrowse link
G NIPSNAP2 nipsnap homolog 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 Ensembl chr21:2,772,818...2,792,962 JBrowse link
G NIPSNAP3A nipsnap homolog 3A involved_in IEA UniProt GO_REF:0000117 NCBI chr12:34,761,926...34,774,306
Ensembl chr12:34,742,810...34,774,968 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:61,351,047...61,393,541
Ensembl chr  X:61,351,054...61,394,305 		JBrowse link
G PHB2 prohibitin 2 involved_in ISO (PMID:28017329) UniProt PMID:28017329 NCBI chr11:6,998,517...7,004,437 JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA
ISO		 Ensembl
RGD		 PMID:25154397 GO_REF:0000107 RGD:12904014 NCBI chr20:111,902,135...111,919,082
Ensembl chr20:111,902,765...111,919,069 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 ISO PMID:20457763
(PMID:23685073), (PMID:28017329)
(PMID:24949970)		 ParkinsonsUK-UCL
UniProt
MGI		 PMID:20457763 PMID:23685073 PMID:24949970 PMID:28017329 RGD:10047224 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:89,318,323...90,034,758 JBrowse link
G RETREG1 reticulophagy regulator 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31446166) MGI
Ensembl		 PMID:31446166 GO_REF:0000107 NCBI chr 4:16,153,003...16,297,252
Ensembl chr 4:16,154,694...16,297,161 		JBrowse link
G RIMOC1 RAB7A interacting MON1-CCZ1 complex subunit 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:40,661,349...40,678,655
Ensembl chr 4:40,661,323...40,678,740 		JBrowse link
G SPATA33 spermatogenesis associated 33 involved_in ISO (PMID:33087875) UniProt PMID:33087875 NCBI chr 5:75,002,037...75,011,305
Ensembl chr 5:75,002,359...75,013,583 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:81,536,271...81,571,061
Ensembl chr23:81,558,082...81,574,830 		JBrowse link
G TAFAZZIN tafazzin, phospholipid-lysophospholipid transacylase involved_in IEA Ensembl GO_REF:0000107
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr11:4,354,911...4,381,762
Ensembl chr11:4,355,053...4,381,273 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:21855797) ParkinsonsUK-UCL PMID:21855797 NCBI chr11:127,276,172...127,304,270
Ensembl chr11:127,276,210...127,304,497 		JBrowse link
mitophagy by internal vacuole formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPATA18 spermatogenesis associated 18 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:16,342,176...16,388,458
Ensembl chr 7:16,340,607...16,387,995 		JBrowse link
negative regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr 5:10,420,866...10,658,370
Ensembl chr 5:10,420,931...10,658,507 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:111,902,135...111,919,082
Ensembl chr20:111,902,765...111,919,069 		JBrowse link
G RNF41 ring finger protein 41 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24949970) MGI
Ensembl		 PMID:24949970 GO_REF:0000107 NCBI chr11:52,151,968...52,175,760
Ensembl chr11:52,141,715...52,175,728 		JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr11:4,354,911...4,381,762
Ensembl chr11:4,355,053...4,381,273 		JBrowse link
G TP53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22044588) Ensembl
MGI		 PMID:22044588 GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TSPO translocator protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:25,678,602...25,690,556
Ensembl chr19:25,686,981...25,690,768 		JBrowse link
G USP30 ubiquitin specific peptidase 30 ISO RGD PMID:24896179 RGD:13208875 NCBI chr11:104,254,923...104,292,373
Ensembl chr11:104,255,012...104,290,273 		JBrowse link
negative regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HTRA2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:32,745,436...32,749,176
Ensembl chr14:32,743,708...32,748,577 		JBrowse link
G VPS13C vacuolar protein sorting 13 homolog C involved_in IMP
IEA		 (PMID:26942284) ParkinsonsUK-UCL
Ensembl		 PMID:26942284 GO_REF:0000107 NCBI chr26:21,463,393...21,647,944
Ensembl chr26:21,463,657...21,648,603 		JBrowse link
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 ISO RGD PMID:23698117 RGD:11561968 NCBI chr 9:124,570,958...124,586,002
Ensembl chr 9:124,568,695...124,585,980 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:15,300,135...15,324,256
Ensembl chr19:15,300,158...15,323,956 		JBrowse link
positive regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,777,807...18,932,784
Ensembl chr 1:18,734,926...18,932,785 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:37042059 RGD:407532700 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G CERS1 ceramide synthase 1 involved_in ISO (PMID:22922758) UniProt PMID:22922758 NCBI chr 6:17,331,021...17,351,542 JBrowse link
G CERS1 ceramide synthase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:17,331,107...17,351,496 JBrowse link
G DELE1 DAP3 binding cell death enhancer 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:44,554,027...44,571,738
Ensembl chr23:44,554,705...44,570,352 		JBrowse link
G EIF2AK1 eukaryotic translation initiation factor 2 alpha kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:15,225,768...15,269,692
Ensembl chr28:15,233,909...15,269,594 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:15,300,135...15,324,256
Ensembl chr19:15,300,158...15,323,956 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G HTT huntingtin involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:45,493,467...45,657,690
Ensembl chr27:45,497,352...45,657,621 		JBrowse link
G IRGM immunity related GTPase M involved_in ISO (PMID:21102437), (PMID:32939830)
(PMID:33510463)		 UniProt PMID:21102437 PMID:32939830 PMID:33510463 NCBI chr23:53,449,576...53,451,373 JBrowse link
G LOC103247334 ADP/ATP translocase 2 involved_in ISO (PMID:31618756) UniProt PMID:31618756
G NOD2 nucleotide binding oligomerization domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:36,492,158...36,531,766
Ensembl chr 5:36,496,414...36,530,499 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:26310625) RGD
ParkinsonsUK-UCL		 PMID:26310625 PMID:28608965 RGD:13432560 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:89,318,323...90,034,758 JBrowse link
G SLC25A4 solute carrier family 25 member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:131,102,077...131,106,076 JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in ISO PMID:29934347 UniProt PMID:29934347 RGD:405650300 NCBI chr 5:599,907...602,549
Ensembl chr 5:599,819...605,567 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl GO_REF:0000107
G VPS13D vacuolar protein sorting 13 homolog D involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:119,289,515...119,573,504
Ensembl chr20:119,288,989...119,569,221 		JBrowse link
positive regulation of type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5IF1 ATP synthase inhibitory factor subunit 1 involved_in ISO (PMID:24005319) ParkinsonsUK-UCL PMID:24005319 NCBI chr20:104,567,306...104,569,346 JBrowse link
G CDC37 cell division cycle 37, HSP90 cochaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,427,220...9,439,469
Ensembl chr 6:9,427,191...9,439,913 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chr20:8,598,110...8,631,517
Ensembl chr20:8,598,628...8,630,990 		JBrowse link
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:45,927,625...45,951,636
Ensembl chr  X:45,928,092...45,952,929 		JBrowse link
G HK2 hexokinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:32,385,237...32,443,864
Ensembl chr14:32,385,249...32,442,403 		JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:49,661,506...49,814,551
Ensembl chr  X:49,660,790...49,808,572 		JBrowse link
G LOC119623630 lysosomal acid glucosylceramidase involved_in IEA Ensembl GO_REF:0000107
G MUL1 mitochondrial E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:112,042,777...112,051,866
Ensembl chr20:112,042,481...112,052,168 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:111,902,135...111,919,082
Ensembl chr20:111,902,765...111,919,069 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:20871098), (PMID:23212910)
(PMID:20457763)		 ParkinsonsUK-UCL PMID:20457763 PMID:20871098 PMID:23212910 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:89,318,323...90,034,758 JBrowse link
G TOMM7 translocase of outer mitochondrial membrane 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:35,485,860...35,496,281
Ensembl chr21:35,485,685...35,497,325 		JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:36,783,670...36,817,071 JBrowse link
regulation of mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY10 adenylate cyclase 10 ISO RGD PMID:31172217 RGD:329403053 NCBI chr25:61,129,837...61,228,180
Ensembl chr25:61,140,293...61,230,117 		JBrowse link
G BNIP3L BCL2 interacting protein 3 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:24,497,311...24,521,424
Ensembl chr 8:24,497,351...24,523,553 		JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr 5:44,093,320...44,133,352
Ensembl chr 5:44,093,215...44,133,335 		JBrowse link
G CTTN cortactin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:4,139,045...4,176,962
Ensembl chr 1:4,137,814...4,176,446 		JBrowse link
G DNM1L dynamin 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:32,114,642...32,178,330
Ensembl chr11:32,114,675...32,177,661 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,894,261...99,105,955
Ensembl chr 7:98,892,504...99,106,084 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:17,007,764...17,018,409
Ensembl chr 6:17,007,390...17,017,714 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,434,966...36,447,676
Ensembl chr 6:36,435,578...36,447,633 		JBrowse link
G PARL presenilin associated rhomboid like involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:5,536,556...5,589,522
Ensembl chr15:5,536,610...5,590,825 		JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:16,847,603...16,874,239
Ensembl chr16:16,845,491...16,859,554 		JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr19:24,364,725...24,439,851
Ensembl chr19:24,364,911...24,440,014 		JBrowse link
G USP36 ubiquitin specific peptidase 36 involved_in ISO (PMID:24912190) ParkinsonsUK-UCL PMID:24912190 NCBI chr16:70,769,133...70,813,274
Ensembl chr16:70,769,797...70,810,844 		JBrowse link
G VDAC1 voltage dependent anion channel 1 involved_in ISO (PMID:25470454) ParkinsonsUK-UCL PMID:25470454 NCBI chr23:36,783,670...36,817,071 JBrowse link
type 2 mitophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC6 histone deacetylase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:45,927,625...45,951,636
Ensembl chr  X:45,928,092...45,952,929 		JBrowse link
G LOC103215822 mitochondrial import inner membrane translocase subunit Tim23 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:41,838,621...41,869,028
Ensembl chr 9:41,837,582...41,868,987 		JBrowse link
G MFN2 mitofusin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:119,787,700...119,818,455
Ensembl chr20:119,787,370...119,816,693 		JBrowse link
G OPTN optineurin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:13,142,036...13,176,996
Ensembl chr 9:13,150,426...13,177,021 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19029340) ParkinsonsUK-UCL PMID:19029340 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:89,318,323...90,034,758 JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chr28:14,019,733...14,141,588
Ensembl chr28:14,019,968...14,141,795 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17043
    cellular process 16562
      process utilizing autophagic mechanism 532
        autophagy 532
          autophagy of mitochondrion 107
            micromitophagy 0
            mitophagy + 86
            mitophagy by internal vacuole formation 1
            negative regulation of autophagy of mitochondrion + 9
            positive regulation of autophagy of mitochondrion + 30
            regulation of autophagy of mitochondrion + 51
Path 2
Term Annotations click to browse term
  biological_process 17043
    cellular process 16562
      metabolic process 10934
        catabolic process 2542
          autophagy 532
            autophagy of mitochondrion 107
              micromitophagy 0
              mitophagy + 86
              mitophagy by internal vacuole formation 1
              negative regulation of autophagy of mitochondrion + 9
              positive regulation of autophagy of mitochondrion + 30
              regulation of autophagy of mitochondrion + 51
paths to the root