Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of alternative mRNA splicing, via spliceosome
go back to main search page
Accession:GO:0000381 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
Synonyms:exact_synonym: regulation of alternative nuclear mRNA splicing, via spliceosome
 broad_synonym: splice site selection

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARB2A ARB2 cotranscriptional regulator A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:87,499,061...87,978,159 JBrowse link
G ARGLU1 arginine and glutamate rich 1 involved_in ISO (PMID:30698747) UniProt PMID:30698747 NCBI chr 3:84,958,279...84,983,102 JBrowse link
G ARGLU1 arginine and glutamate rich 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 3:84,972,187...84,983,106 JBrowse link
G CELF1 CUGBP Elav-like family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:32109384) MGI
Ensembl		 PMID:32109384 GO_REF:0000107 NCBI chr 1:17,764,915...17,852,974
Ensembl chr 1:17,817,422...17,853,783 		JBrowse link
G CELF3 CUGBP Elav-like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:11,973,531...11,988,560
Ensembl chr20:11,981,181...11,992,302 		JBrowse link
G CELF4 CUGBP Elav-like family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19720736) MGI
Ensembl		 PMID:19720736 GO_REF:0000107 NCBI chr18:43,314,960...43,635,301
Ensembl chr18:43,603,021...43,624,537 		JBrowse link
G CELF5 CUGBP Elav-like family member 5 involved_in ISO (PMID:11158314) UniProt PMID:11158314 NCBI chr 6:2,988,764...3,065,099 JBrowse link
G CELF5 CUGBP Elav-like family member 5 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:3,041,933...3,055,376 JBrowse link
G CELF6 CUGBP Elav-like family member 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,135,021...11,169,351
Ensembl chr26:11,135,088...11,166,493 		JBrowse link
G DDX17 DEAD-box helicase 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:21,145,576...21,167,091
Ensembl chr19:21,145,417...21,167,543 		JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:56,766,669...56,773,767
Ensembl chr16:56,767,186...56,773,464 		JBrowse link
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A involved_in ISO PMID:22767602 UniProt PMID:22767602 RGD:8554210 NCBI chr 2:81,318,509...81,467,227
Ensembl chr 2:81,425,902...81,467,677 		JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:122,635,383...122,674,298
Ensembl chr  X:122,635,439...122,674,355 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,397,173...50,403,192
Ensembl chr11:50,396,888...50,400,802 		JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,452,705...33,469,070
Ensembl chr 6:33,452,852...33,466,284 		JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:81,879,532...81,890,684
Ensembl chr25:81,878,111...81,890,701 		JBrowse link
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:100,831,307...100,859,609
Ensembl chr20:100,832,461...100,859,630 		JBrowse link
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:12,522,386...13,150,784
Ensembl chr17:12,522,531...12,898,201 		JBrowse link
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:129,814,228...130,044,479
Ensembl chr 8:129,911,686...130,035,258 		JBrowse link
G LOC103221203 RNA-binding protein 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:12628928), (PMID:16260624), (PMID:16777844), (PMID:16934801), (PMID:21518792)
(PMID:23129807)		 UniProt
MGI		 PMID:12628928 PMID:16260624 PMID:16777844 PMID:16934801 PMID:21518792 More... NCBI chr 1:7,604,440...7,638,536 JBrowse link
G LOC103239432 myoblast determination protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9525963) Ensembl
MGI		 PMID:9525963 GO_REF:0000107 NCBI chr 1:47,250,927...47,254,572
Ensembl chr 1:47,251,551...47,253,284 		JBrowse link
G LOC103245886 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:47,513,308...47,515,651 JBrowse link
G LOC119622192 heterogeneous nuclear ribonucleoprotein A1-like involved_in IEA Ensembl GO_REF:0000107
G MAGOH mago homolog, exon junction complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:79,685,884...79,697,583
Ensembl chr20:79,685,950...79,698,129 		JBrowse link
G MBNL1 muscleblind like splicing regulator 1 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chr15:38,208,694...38,427,867
Ensembl chr15:38,208,038...38,375,273 		JBrowse link
G MBNL2 muscleblind like splicing regulator 2 involved_in
acts_upstream_of_or_within		 ISO PMID:31283468
(PMID:19720736)		 UniProt
MGI		 PMID:19720736 PMID:31283468 RGD:243049249 NCBI chr 3:75,936,438...76,108,163
Ensembl chr 3:75,987,751...76,109,519 		JBrowse link
G NOVA1 NOVA alternative splicing regulator 1 involved_in ISO (PMID:17065982)
(PMID:14615540), (PMID:27223325)		 UniProt PMID:14615540 PMID:17065982 PMID:27223325 NCBI chr24:3,363,652...3,513,901
Ensembl chr24:3,360,831...3,514,435 		JBrowse link
G NOVA2 NOVA alternative splicing regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:39,390,384...39,428,290
Ensembl chr 6:39,393,868...39,428,272 		JBrowse link
G NSRP1 nuclear speckle splicing regulatory protein 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr16:23,852,744...23,919,101
Ensembl chr16:23,852,981...23,918,783 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:546,010...560,086
Ensembl chr 6:545,964...562,630 		JBrowse link
G PUF60 poly(U) binding splicing factor 60 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:138,034,526...138,047,485
Ensembl chr 8:138,034,395...138,042,468 		JBrowse link
G RBFOX1 RNA binding fox-1 homolog 1 acts_upstream_of_or_within ISO (PMID:23300487) MGI PMID:23300487 NCBI chr 5:4,896,225...7,365,137 JBrowse link
G RBFOX1 RNA binding fox-1 homolog 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr 5:7,163,079...7,365,171 JBrowse link
G RBFOX2 RNA binding fox-1 homolog 2 involved_in
acts_upstream_of_or_within		 ISO
IEA		 Atp2b1, Mef2a
(PMID:22357600)
Cacna1c
Fxr1, Mef2a, Mtmr3
Mcl1		 RGD
TreeGrafter
Ensembl
MGI
InterPro		 PMID:22357600 PMID:27239029 PMID:28993448 PMID:31778749 PMID:35641779 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:329845872 RGD:329845873 RGD:329845874 RGD:329848961 NCBI chr19:18,507,184...18,801,535 JBrowse link
G RBFOX3 RNA binding fox-1 homolog 3 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:71,058,257...71,673,053
Ensembl chr16:71,058,131...71,276,475 		JBrowse link
G RBM11 RNA binding motif protein 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21984414) MGI
TreeGrafter		 PMID:21984414 GO_REF:0000118 NCBI chr 2:78,390,304...78,395,739 JBrowse link
G RBM15 RNA binding motif protein 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:23,191,916...23,200,626
Ensembl chr20:23,193,349...23,199,524 		JBrowse link
G RBM15B RNA binding motif protein 15B involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:12,732,260...12,735,401
Ensembl chr22:12,732,396...12,735,068 		JBrowse link
G RBM20 RNA binding motif protein 20 involved_in ISO PMID:33805770
PMID:27289039		 UniProt PMID:27289039 PMID:33805770 RGD:152995553 RGD:152995577 NCBI chr 9:103,583,722...103,775,391
Ensembl chr 9:103,703,569...103,777,934 		JBrowse link
G RBM24 RNA binding motif protein 24 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:54,853,761...54,865,742
Ensembl chr17:54,853,761...54,866,058 		JBrowse link
G RBM25 RNA binding motif protein 25 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:50,307,718...50,384,087
Ensembl chr24:50,307,790...50,382,521 		JBrowse link
G RBM47 RNA binding motif protein 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:9,683,026...9,888,245
Ensembl chr27:9,873,138...9,888,239 		JBrowse link
G RBM5 RNA binding motif protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:11,473,623...11,505,251
Ensembl chr22:11,473,494...11,507,096 		JBrowse link
G RBM7 RNA binding motif protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:105,806,156...105,815,518
Ensembl chr 1:105,806,228...105,816,356 		JBrowse link
G RBM8A RNA binding motif protein 8A involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,819,891...12,821,656
Ensembl chr20:12,819,956...12,821,629 		JBrowse link
G RBMX RNA binding motif protein X-linked involved_in ISO (PMID:12165565), (PMID:12761049) UniProt PMID:12165565 PMID:12761049 NCBI chr  X:111,880,859...111,892,660 JBrowse link
G RBMXL1 RBMX like 1 involved_in ISO PMID:19282290 UniProt PMID:19282290 RGD:2316827 NCBI chr20:44,416,179...44,428,807 JBrowse link
G RBPMS RNA binding protein, mRNA processing factor involved_in ISO PMID:37548402 UniProt PMID:37548402 RGD:401901235 NCBI chr 8:28,496,583...28,684,487
Ensembl chr 8:28,496,075...28,659,907 		JBrowse link
G RBPMS2 RNA binding protein, mRNA processing factor 2 involved_in ISO PMID:31283468 UniProt PMID:31283468 RGD:243049249 NCBI chr26:18,810,371...18,847,642 JBrowse link
G REST RE1 silencing transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:11,749,312...11,776,103
Ensembl chr 7:11,749,168...11,773,340 		JBrowse link
G RNPS1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:22203037) UniProt PMID:22203037 NCBI chr 5:2,148,929...2,163,810 JBrowse link
G SAP18 Sin3A associated protein 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:63,736...72,521
Ensembl chr 3:61,957...72,524 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:13,213,059...13,237,200
Ensembl chr19:13,211,275...13,237,257 		JBrowse link
G SMNDC1 survival motor neuron domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:103,217,216...103,229,422
Ensembl chr 9:103,218,308...103,228,053 		JBrowse link
G SRRM4 serine/arginine repetitive matrix 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23055939) Ensembl
MGI		 PMID:23055939 GO_REF:0000107 NCBI chr11:114,329,529...114,506,944
Ensembl chr11:114,329,733...114,500,732 		JBrowse link
G SRSF12 serine and arginine rich splicing factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:13,864,683...13,884,424
Ensembl chr13:13,864,870...13,884,334 		JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21470964) Ensembl
MGI		 PMID:21470964 GO_REF:0000107 NCBI chr16:44,945,193...44,948,496
Ensembl chr16:44,945,200...44,946,438 		JBrowse link
G SRSF6 serine and arginine rich splicing factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23132731) MGI
Ensembl		 PMID:23132731 GO_REF:0000107 NCBI chr 2:20,340,163...20,345,873
Ensembl chr 2:20,342,681...20,346,122 		JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:96,552,233...96,631,220
Ensembl chr20:96,552,077...96,599,904 		JBrowse link
G TIA1 TIA1 cytotoxic granule associated RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:36,866,379...36,902,683
Ensembl chr14:36,866,414...36,903,246 		JBrowse link
G TRA2B transformer 2 beta homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:3,493,287...3,514,421
Ensembl chr15:3,493,541...3,513,994 		JBrowse link
G WTAP WT1 associated protein involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr13:87,328,228...87,357,868 JBrowse link
G YTHDC1 YTH N6-methyladenosine RNA binding protein C1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:29799838) MGI
TreeGrafter		 PMID:29799838 GO_REF:0000118 NCBI chr 7:633,158...670,000
Ensembl chr 7:633,172...671,030 		JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,802,171...3,824,552
Ensembl chr 6:3,801,046...3,812,884 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17043
    cellular process 16562
      metabolic process 10934
        regulation of metabolic process 6457
          regulation of primary metabolic process 5431
            regulation of RNA splicing 164
              regulation of mRNA splicing, via spliceosome 115
                regulation of alternative mRNA splicing, via spliceosome 64
Path 2
Term Annotations click to browse term
  biological_process 17043
    cellular process 16562
      metabolic process 10934
        primary metabolic process 9703
          nucleobase-containing compound metabolic process 5446
            nucleic acid metabolic process 4919
              RNA metabolic process 4373
                RNA biosynthetic process 4178
                  RNA processing 886
                    RNA splicing 393
                      RNA splicing, via transesterification reactions 302
                        RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 302
                          mRNA splicing, via spliceosome 302
                            alternative mRNA splicing, via spliceosome 80
                              regulation of alternative mRNA splicing, via spliceosome 64
paths to the root