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ONTOLOGY REPORT - ANNOTATIONS


Term:response to oxygen radical
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Accession:GO:0000305 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen radical stimulus. An oxygen radical is any oxygen species that carries a free electron; examples include hydroxyl radicals and the superoxide anion.


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response to oxygen radical term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Txnrd2 thioredoxin reductase 2 TAS (MGI:MGI:1343572|PMID:10455115) UniProtKB PMID:10455115 MGI:MGI:1343572 NCBI chr16:18,426,417...18,479,073
Ensembl chr16:18,426,384...18,479,073
JBrowse link
cellular response to superoxide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adprhl2 ADP-ribosylhydrolase like 2 IMP
ISO
(MGI:MGI:5523722|PMID:24191052) MGI PMID:24191052 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5523722 NCBI chr 4:126,316,351...126,321,703
Ensembl chr 4:126,316,047...126,321,703
JBrowse link
G Glrx2 glutaredoxin 2 (thioltransferase) ISO RGD PMID:25126518 RGD:9686060 NCBI chr 1:143,739,224...143,749,678
Ensembl chr 1:143,716,338...143,749,676
JBrowse link
G Parp1 poly (ADP-ribose) polymerase family, member 1 IDA (MGI:MGI:5523722|PMID:24191052) MGI PMID:24191052 MGI:MGI:5523722 NCBI chr 1:180,568,891...180,600,999
Ensembl chr 1:180,568,924...180,601,254
JBrowse link
regulation of removal of superoxide radicals term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd36 CD36 molecule IMP (MGI:MGI:4850200|PMID:20978343) BHF-UCL PMID:20978343 MGI:MGI:4850200 NCBI chr 5:17,781,690...17,888,959
Ensembl chr 5:17,781,690...17,888,801
JBrowse link
G Dhfr dihydrofolate reductase IMP (MGI:MGI:5645206|PMID:19666465) BHF-UCL PMID:19666465 MGI:MGI:5645206 NCBI chr13:92,354,783...92,389,053
Ensembl chr13:92,354,726...92,389,053
JBrowse link
G Fbln5 fibulin 5 IMP (MGI:MGI:3610795|PMID:15528465) BHF-UCL PMID:15528465 MGI:MGI:3610795 NCBI chr12:101,746,565...101,819,119
Ensembl chr12:101,746,565...101,819,055
JBrowse link
G Gch1 GTP cyclohydrolase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:47,153,895...47,189,413
Ensembl chr14:47,153,895...47,189,413
JBrowse link
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 IMP (MGI:MGI:4850200|PMID:20978343) BHF-UCL PMID:20978343 MGI:MGI:4850200 NCBI chr 2:75,675,513...75,704,663
Ensembl chr 2:75,675,513...75,704,641
JBrowse link
removal of superoxide radicals term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoa4 apolipoprotein A-IV ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:46,240,844...46,243,458
Ensembl chr 9:46,240,696...46,243,459
JBrowse link
G Atp7a ATPase, Cu++ transporting, alpha polypeptide IMP (MGI:MGI:3616392|PMID:16371425) MGI PMID:16371425 MGI:MGI:3616392 NCBI chr  X:106,027,224...106,128,161
Ensembl chr  X:106,027,276...106,124,926
JBrowse link
G Ccs copper chaperone for superoxide dismutase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:4,825,366...4,839,356
Ensembl chr19:4,825,366...4,839,332
JBrowse link
G Fancc Fanconi anemia, complementation group C IGI (MGI:MGI:2149223|PMID:11493445) MGI PMID:11493445 MGI:MGI:2149223 NCBI chr13:63,301,334...63,497,292
Ensembl chr13:63,285,043...63,497,278
JBrowse link
G Mpo myeloperoxidase IMP (MGI:MGI:1333719|PMID:10085024) MGI PMID:10085024 MGI:MGI:1333719 NCBI chr11:87,793,784...87,804,412
Ensembl chr11:87,793,581...87,804,413
JBrowse link
G Mt3 metallothionein 3 ISO (PMID:12383939) UniProtKB PMID:12383939 NCBI chr 8:94,152,607...94,154,148
Ensembl chr 8:94,152,607...94,154,146
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:24,364,816...24,384,474
Ensembl chr 5:24,364,810...24,384,474
JBrowse link
G Prdx1 peroxiredoxin 1 IMP
IBA
(MGI:MGI:3611115|PMID:16170382)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:3695235|PMID:16880205)
MGI
GO_Central
PMID:16170382, PMID:16880205, PMID:21873635 MGI:MGI:3611115, MGI:MGI:3695235, MGI:MGI:6201960 NCBI chr 4:116,685,599...116,700,000
Ensembl chr 4:116,685,544...116,700,822
JBrowse link
G Prdx2 peroxiredoxin 2 IMP
IBA
ISO
(MGI:MGI:4850200|PMID:20978343)
(MGI:MGI:6201960|PMID:21873635)
BHF-UCL
GO_Central
MGI
PMID:20978343, PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:4850200, MGI:MGI:6201960 NCBI chr 8:84,969,622...84,974,811
Ensembl chr 8:84,969,587...84,974,834
JBrowse link
G Sod1 superoxide dismutase 1, soluble IGI
IBA
IMP
ISO
TAS
(MGI:MGI:2149223|PMID:11493445)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:1201750|PMID:9516486), (MGI:MGI:1314762|PMID:9788901)
(MGI:MGI:3625573|PMID:12433839), (MGI:MGI:3710732|PMID:17448893)
(MGI:MGI:1342989|PMID:10436316), (MGI:MGI:1351737|PMID:10471451), (MGI:MGI:2149223|PMID:11493445), (MGI:MGI:80951|PMID:8673102)
(MGI:MGI:2152694|PMID:11557311)
(MGI:MGI:1353351|PMID:10679476)
MGI
GO_Central
RGD
PMID:8673102, PMID:9516486, PMID:9788901, PMID:10436316, PMID:10471451, PMID:10679476, PMID:11493445, PMID:11557311, PMID:12433839, PMID:17448893, PMID:21873635 GO_REF:0000096, MGI:MGI:1201750, MGI:MGI:1314762, MGI:MGI:1342989, MGI:MGI:1351737, MGI:MGI:1353351, MGI:MGI:2149223, MGI:MGI:2152694, MGI:MGI:3625573, MGI:MGI:3710732, MGI:MGI:4417868, MGI:MGI:6201960, MGI:MGI:80951 NCBI chr16:90,220,762...90,226,333
Ensembl chr16:90,220,754...90,226,329
JBrowse link
G Sod2 superoxide dismutase 2, mitochondrial IMP
ISO
(MGI:MGI:3765405|PMID:16873728) MGI
RGD
PMID:16873728 GO_REF:0000096, MGI:MGI:3765405, MGI:MGI:4417868, MGI:MGI:4834177 NCBI chr17:13,007,839...13,018,119
Ensembl chr17:13,006,846...13,040,063
JBrowse link
G Sod3 superoxide dismutase 3, extracellular IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 5:52,363,804...52,369,738
Ensembl chr 5:52,363,791...52,371,418
JBrowse link
response to superoxide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 IMP (MGI:MGI:3054497|PMID:15340056) MGI PMID:15340056 MGI:MGI:3054497 NCBI chr14:32,513,291...32,580,990
Ensembl chr14:32,513,521...32,580,990
JBrowse link
G Sod1 superoxide dismutase 1, soluble IMP
ISO
(MGI:MGI:3611643|PMID:16357131)
(MGI:MGI:1201750|PMID:9516486), (MGI:MGI:1314762|PMID:9788901)
MGI PMID:9516486, PMID:9788901, PMID:16357131 GO_REF:0000096, MGI:MGI:1201750, MGI:MGI:1314762, MGI:MGI:3611643, MGI:MGI:4834177 NCBI chr16:90,220,762...90,226,333
Ensembl chr16:90,220,754...90,226,329
JBrowse link
G Sod2 superoxide dismutase 2, mitochondrial IMP
ISO
(MGI:MGI:1930860|PMID:11156968)
(MGI:MGI:3691744|PMID:15642323)
MGI PMID:11156968, PMID:15642323 GO_REF:0000096, MGI:MGI:1930860, MGI:MGI:3691744, MGI:MGI:4834177 NCBI chr17:13,007,839...13,018,119
Ensembl chr17:13,006,846...13,040,063
JBrowse link
G Ucp2 uncoupling protein 2 (mitochondrial, proton carrier) ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 7:100,493,337...100,499,629
Ensembl chr 7:100,493,337...100,502,020
JBrowse link
G Ucp3 uncoupling protein 3 (mitochondrial, proton carrier) IMP
ISO
(MGI:MGI:2183181|PMID:11780125) MGI
RGD
PMID:11780125 GO_REF:0000096, MGI:MGI:2183181, MGI:MGI:4417868 NCBI chr 7:100,472,991...100,486,432
Ensembl chr 7:100,472,990...100,486,432
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23392
    response to stimulus 10300
      response to chemical 5380
        response to inorganic substance 816
          response to oxygen radical 24
            cellular response to oxygen radical + 20
            response to superoxide + 23
Path 2
Term Annotations click to browse term
  biological_process 23392
    response to stimulus 10300
      response to stress 4155
        response to oxidative stress 530
          response to reactive oxygen species 300
            response to oxygen radical 24
              cellular response to oxygen radical + 20
              response to superoxide + 23
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.