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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasmic ubiquitin ligase complex
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Accession:GO:0000153 term browser browse the term
Definition:A ubiquitin ligase complex found in the cytoplasm.



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cytoplasmic ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 part_of IBA
ISO
PMID:21873635
UniProtKB:O95352 (PMID:11825910)
RGD PMID:11825910 PMID:21873635 RGD:13792537 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224
JBrowse link
Hrd1p ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam8a1 family with sequence similarity 8, member A1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr17:18,026,601...18,035,509
Ensembl chr17:18,026,601...18,035,470
JBrowse link
Hrd1p ubiquitin ligase ERAD-L complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,560,274...115,563,346
Ensembl chr 4:115,560,261...115,563,346
JBrowse link
G Derl1 derlin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:89,404,413...89,427,095
Ensembl chr 7:89,404,417...89,427,145
JBrowse link
G Derl2 derlin 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,727,764...55,739,462
Ensembl chr10:55,727,643...55,739,518
JBrowse link
G Derl3 derlin 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,754,490...12,768,454
Ensembl chr20:12,763,543...12,767,027
JBrowse link
G Sel1l SEL1L adaptor subunit of ERAD E3 ubiquitin ligase part_of IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26471130)
Ensembl
UniProt
RGD
PMID:26471130 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648
JBrowse link
G Syvn1 synoviolin 1 part_of ISO (PMID:26471130), (PMID:28827405) RGD PMID:26471130 PMID:28827405 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152
JBrowse link
VCB complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:76,426,358...76,427,521 JBrowse link
G AC119015.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC119015.3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:73,743,526...73,743,822 JBrowse link
G Cul2 cullin 2 IDA RGD PMID:10213691 RGD:2301042 NCBI chr17:54,169,086...54,210,197
Ensembl chr17:54,169,086...54,209,968
JBrowse link
G Elob elongin B part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10213691 PMID:21873635 RGD:2301042, RGD:13792537 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635
JBrowse link
G Elob-ps13 elongin B, pseduogene 13 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169
JBrowse link
G Eloc elongin C IDA RGD PMID:10213691 RGD:2301042 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
JBrowse link
G ENSRNOG00000071067 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:126,816,739...126,817,049 JBrowse link
G Neurl2 neuralized E3 ubiquitin protein ligase 2 part_of ISO (MGI:3042352|PMID:14960280) RGD PMID:14960280 MGI:3042352 NCBI chr 3:153,566,659...153,569,380
Ensembl chr 3:153,566,660...153,569,380
JBrowse link
G Rbx1 ring-box 1 IDA RGD PMID:10213691 RGD:2301042 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051
JBrowse link
G RGD1564031 similar to transcription elongation factor B (SIII), polypeptide 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970
JBrowse link
G RGD1565653 similar to transcription elongation factor B (SIII), polypeptide 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:110,990,032...110,995,705
Ensembl chr 8:110,989,940...110,995,640
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor part_of IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:9122164 PMID:10213691 PMID:21873635 RGD:1559276, RGD:2301042, RGD:13792537 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19309
    cellular anatomical entity 19051
      cytoplasm 11299
        cytoplasmic ubiquitin ligase complex 21
          ER ubiquitin ligase complex + 7
          VCB complex 13
          cytoplasmic SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 19309
    protein-containing complex 5988
      catalytic complex 1707
        transferase complex 843
          ubiquitin ligase complex 310
            cytoplasmic ubiquitin ligase complex 21
              ER ubiquitin ligase complex + 7
              VCB complex 13
              cytoplasmic SCF ubiquitin ligase complex 0
paths to the root