Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic ubiquitin ligase complex
go back to main search page
Accession:GO:0000153 term browser browse the term
Definition:A ubiquitin ligase complex found in the cytoplasm.


show annotations for term's descendants           Sort by:
 
cytoplasmic ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 part_of IBA
ISO		 PMID:21873635
UniProtKB:O95352 (PMID:11825910)		 RGD PMID:11825910 PMID:21873635 RGD:13792537 NCBI chr11:55,624,928...55,653,212
Ensembl chr11:55,624,917...55,653,224 		JBrowse link
Hrd1p ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam8a1 family with sequence similarity 8, member A1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr17:18,026,601...18,035,509
Ensembl chr17:18,026,601...18,035,470 		JBrowse link
Hrd1p ubiquitin ligase ERAD-L complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:115,560,274...115,563,346
Ensembl chr 4:115,560,261...115,563,346 		JBrowse link
G Derl1 derlin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:89,404,413...89,427,095
Ensembl chr 7:89,404,417...89,427,145 		JBrowse link
G Derl2 derlin 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:55,727,764...55,739,462
Ensembl chr10:55,727,643...55,739,518 		JBrowse link
G Derl3 derlin 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:12,754,490...12,768,454
Ensembl chr20:12,763,543...12,767,027 		JBrowse link
G Sel1l SEL1L adaptor subunit of ERAD E3 ubiquitin ligase part_of IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:26471130)		 Ensembl
UniProt
RGD		 PMID:26471130 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:110,735,450...110,779,695
Ensembl chr 6:110,735,450...110,779,648 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO (PMID:26471130), (PMID:28827405) RGD PMID:26471130 PMID:28827405 NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152 		JBrowse link
VCB complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:76,426,358...76,427,521 JBrowse link
G AC119015.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC119015.3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:73,743,526...73,743,822 JBrowse link
G Cul2 cullin 2 IDA RGD PMID:10213691 RGD:2301042 NCBI chr17:54,169,086...54,210,197
Ensembl chr17:54,169,086...54,209,968 		JBrowse link
G Elob elongin B part_of IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:10213691 PMID:21873635 RGD:2301042, RGD:13792537 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Elob-ps13 elongin B, pseduogene 13 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169 		JBrowse link
G Eloc elongin C IDA RGD PMID:10213691 RGD:2301042 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890 		JBrowse link
G ENSRNOG00000071067 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:126,816,739...126,817,049 JBrowse link
G Neurl2 neuralized E3 ubiquitin protein ligase 2 part_of ISO (MGI:3042352|PMID:14960280) RGD PMID:14960280 MGI:3042352 NCBI chr 3:153,566,659...153,569,380
Ensembl chr 3:153,566,660...153,569,380 		JBrowse link
G Rbx1 ring-box 1 IDA RGD PMID:10213691 RGD:2301042 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051 		JBrowse link
G RGD1564031 similar to transcription elongation factor B (SIII), polypeptide 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970 		JBrowse link
G RGD1565653 similar to transcription elongation factor B (SIII), polypeptide 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:110,990,032...110,995,705
Ensembl chr 8:110,989,940...110,995,640 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor part_of IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:9122164 PMID:10213691 PMID:21873635 RGD:1559276, RGD:2301042, RGD:13792537 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19309
    cellular anatomical entity 19051
      cytoplasm 11299
        cytoplasmic ubiquitin ligase complex 21
          ER ubiquitin ligase complex + 7
          VCB complex 13
          cytoplasmic SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 19309
    protein-containing complex 5988
      catalytic complex 1707
        transferase complex 843
          ubiquitin ligase complex 310
            cytoplasmic ubiquitin ligase complex 21
              ER ubiquitin ligase complex + 7
              VCB complex 13
              cytoplasmic SCF ubiquitin ligase complex 0
paths to the root