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ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic ubiquitin ligase complex
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Accession:GO:0000153 term browser browse the term
Definition:A ubiquitin ligase complex found in the cytoplasm.

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cytoplasmic ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg3 autophagy related 3 part_of IBA
ISO		 PMID:21873635
UniProtKB:O95352 (PMID:11825910)		 RGD PMID:11825910, PMID:21873635 RGD:13792537 NCBI chr11:60,585,192...60,613,706
Ensembl chr11:60,585,171...60,613,718 		JBrowse link
Hrd1p ubiquitin ligase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam8a1 family with sequence similarity 8, member A1 part_of ISO (PMID:28827405) RGD PMID:28827405 NCBI chr17:18,413,093...18,421,974
Ensembl chr17:18,415,629...18,421,861 		JBrowse link
Hrd1p ubiquitin ligase ERAD-L complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,887,030...113,890,103
Ensembl chr 4:113,887,115...113,890,101 		JBrowse link
G Derl1 derlin 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:97,737,176...97,759,852
Ensembl chr 7:97,737,178...97,759,852 		JBrowse link
G Derl2 derlin 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:57,641,682...57,653,554
Ensembl chr10:57,644,207...57,653,359 		JBrowse link
G Derl3 derlin 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:13,692,102...13,707,645
Ensembl chr20:13,704,314...13,706,205 		JBrowse link
G Fam8a1 family with sequence similarity 8, member A1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:18,413,093...18,421,974
Ensembl chr17:18,415,629...18,421,861 		JBrowse link
G Sel1l SEL1L adaptor subunit of ERAD E3 ubiquitin ligase part_of IEA
ISS
ISO
IBA		 GO_REF:0000107
GO_REF:0000024
(PMID:26471130)
PMID:21873635		 Ensembl
UniProt
RGD		 PMID:26471130, PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 6:115,572,683...115,616,904
Ensembl chr 6:115,572,649...115,616,859 		JBrowse link
G Sel1l2 SEL1L2 adaptor subunit of ERAD E3 ligase part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:134,281,809...134,406,560
Ensembl chr 3:134,281,807...134,462,653 		JBrowse link
G Syvn1 synoviolin 1 part_of ISO (PMID:26471130), (PMID:28827405) RGD PMID:26471130 PMID:28827405 NCBI chr 1:221,409,281...221,416,229
Ensembl chr 1:221,409,271...221,417,886 		JBrowse link
VCB complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:77,721,411...77,721,737 JBrowse link
G AABR07051791.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:21,521,165...21,521,912 JBrowse link
G AABR07051982.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:30,929,848...30,930,141 JBrowse link
G AABR07060156.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 4:60,054,287...60,054,622 JBrowse link
G AABR07068955.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:3,271,956...3,272,306 JBrowse link
G AC119015.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:76,280,933...76,281,283 JBrowse link
G AC119015.3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:76,274,563...76,274,859 JBrowse link
G AC132539.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:119,285,668...119,286,024 JBrowse link
G Cul2 cullin 2 IDA RGD PMID:10213691 RGD:2301042 NCBI chr17:56,952,480...56,992,716
Ensembl chr17:56,952,480...56,992,694 		JBrowse link
G Elob elongin B part_of IDA
IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:10213691, PMID:21873635 GO_REF:0000002, RGD:2301042, RGD:13792537 NCBI chr10:13,163,032...13,168,217
Ensembl chr10:13,163,036...13,168,217 		JBrowse link
G Eloc elongin C IDA RGD PMID:10213691 RGD:2301042 NCBI chr 5:2,042,991...2,059,357
Ensembl chr 5:2,042,991...2,059,351 		JBrowse link
G LOC100909963 transcription elongation factor B polypeptide 2-like part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:3,271,922...3,272,881 JBrowse link
G LOC103691042 transcription elongation factor B polypeptide 2 pseudogene part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:77,721,405...77,721,857 JBrowse link
G LOC103691783 transcription elongation factor B polypeptide 2 pseudogene part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:30,929,770...30,930,137 JBrowse link
G Neurl2 neuralized E3 ubiquitin protein ligase 2 part_of ISO (MGI:3042352|PMID:14960280) RGD PMID:14960280 MGI:3042352 NCBI chr 3:161,296,303...161,299,024
Ensembl chr 3:161,296,304...161,299,024 		JBrowse link
G Rbx1 ring-box 1 IDA RGD PMID:10213691 RGD:2301042 NCBI chr 7:122,700,849...122,710,907
Ensembl chr 7:122,700,854...122,709,935 		JBrowse link
G RGD1304870 similar to Tceb2 protein part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:76,278,747...76,281,411 JBrowse link
G RGD1561118 similar to transcription elongation factor B (SIII), polypeptide 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:76,274,440...76,284,458 JBrowse link
G RGD1563055 similar to transcription elongation factor B (SIII), polypeptide 2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:60,054,126...60,054,622 JBrowse link
G RGD1563330 similar to elongin B isoform b part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Vhl von Hippel-Lindau tumor suppressor part_of IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:9122164, PMID:21873635, PMID:10213691 RGD:1559276, RGD:13792537, RGD:2301042 NCBI chr 4:145,580,869...145,587,835
Ensembl chr 4:145,580,799...145,587,845 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20138
    cellular anatomical entity 19840
      cytoplasm 11424
        cytoplasmic ubiquitin ligase complex 30
          ER ubiquitin ligase complex + 8
          VCB complex 21
          cytoplasmic SCF ubiquitin ligase complex 0
Path 2
Term Annotations click to browse term
  cellular_component 20138
    protein-containing complex 6037
      catalytic complex 1457
        transferase complex 800
          ubiquitin ligase complex 314
            cytoplasmic ubiquitin ligase complex 30
              ER ubiquitin ligase complex + 8
              VCB complex 21
              cytoplasmic SCF ubiquitin ligase complex 0
paths to the root