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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deacetylase complex
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Accession:GO:0000118 term browser browse the term
Definition:A protein complex that possesses histone deacetylase activity.
Comment:Note that this term represents a location, not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'histone deacetylase activity ; GO:0004407'.
Synonyms:exact_synonym: HDAC complex


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histone deacetylase complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:1624291
RGD:1600115
G Dnttip1 deoxynucleotidyltransferase, terminal, interacting protein 1 JBrowse link 3 161,212,156 161,235,749 RGD:1600115
RGD:1624291
G Elmsan1 ELM2 and Myb/SANT domain containing 1 JBrowse link 6 107,633,762 107,703,462 RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
RGD:13792537
G Hdac10 histone deacetylase 10 JBrowse link 7 130,102,335 130,109,036 RGD:1624291
RGD:1600115
G Hdac11 histone deacetylase 11 JBrowse link 4 122,781,095 122,798,355 RGD:1624291
RGD:1600115
G Hdac1l histone deacetylase 1-like JBrowse link 9 84,893,145 84,894,599 RGD:13792537
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:13792537
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:1600115
RGD:13792537
RGD:1624291
G Hdac4 histone deacetylase 4 JBrowse link 9 99,052,945 99,299,715 RGD:1624291
RGD:1600115
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:1600115
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:8553516
RGD:1600115
G Hdac8 histone deacetylase 8 JBrowse link X 72,163,777 72,370,058 RGD:13792537
G Hdac9 histone deacetylase 9 JBrowse link 6 53,487,367 54,358,694 RGD:1600115
G Hint1 histidine triad nucleotide binding protein 1 JBrowse link 10 40,208,236 40,211,981 RGD:1624291
RGD:1600115
G Hr HR, lysine demethylase and nuclear receptor corepressor JBrowse link 15 52,241,801 52,261,276 RGD:1599577
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:1624291
RGD:1600115
G Mecom MDS1 and EVI1 complex locus JBrowse link 2 117,396,084 117,993,604 RGD:1624291
RGD:1600115
G Mta2 metastasis associated 1 family, member 2 JBrowse link 1 225,140,863 225,149,584 RGD:1624291
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:13792537
RGD:1624291
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:1624291
RGD:13792537
G Nrip1 nuclear receptor interacting protein 1 JBrowse link 11 14,658,225 14,742,478 RGD:1624291
RGD:1600115
G Phf21a PHD finger protein 21A JBrowse link 3 81,099,765 81,271,841 RGD:1624291
RGD:13792537
G Rere arginine-glutamic acid dipeptide repeats JBrowse link 5 167,330,966 167,664,506 RGD:1624291
RGD:1600115
G Sap30 Sin3A associated protein 30 JBrowse link 16 36,115,942 36,121,310 RGD:1624291
RGD:1600115
G Sap30l SAP30-like JBrowse link 10 43,224,151 43,231,864 RGD:1624291
RGD:13792537
G Satb2 SATB homeobox 2 JBrowse link 9 63,456,877 63,642,193 RGD:1624291
RGD:1600115
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor JBrowse link 5 133,864,401 133,878,604 RGD:1624291
RGD:1600115
G Tbl1x transducin (beta)-like 1 X-linked JBrowse link X 44,959,883 44,988,551 RGD:13792537
RGD:1624291
G Tbl1xr1 transducin (beta)-like 1 X-linked receptor 1 JBrowse link 2 107,221,913 107,359,229 RGD:13792537
RGD:1624291
G Trerf1 transcriptional regulating factor 1 JBrowse link 9 15,653,230 15,881,695 RGD:13792537
G Zfp217 zinc finger protein 217 JBrowse link 3 166,981,419 167,022,349 RGD:1624291
RGD:1600115
G Zfp541 zinc finger protein 541 JBrowse link 1 77,957,188 77,993,816 RGD:1624291
RGD:13792537
NuRD complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd3 chromodomain helicase DNA binding protein 3 JBrowse link 10 55,943,467 55,970,417 RGD:1624291
RGD:1600115
G Chd4 chromodomain helicase DNA binding protein 4 JBrowse link 4 157,612,531 157,645,660 RGD:1624291
RGD:1600115
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:1624291
G Gatad2a GATA zinc finger domain containing 2A JBrowse link 16 21,177,793 21,267,768 RGD:1624291
RGD:13792537
G Gatad2b GATA zinc finger domain containing 2B JBrowse link 2 189,654,871 189,735,056 RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1600115
RGD:1624291
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:1624291
RGD:1600115
G Mta1 metastasis associated 1 JBrowse link 6 137,911,302 137,950,066 RGD:1624291
RGD:13792537
RGD:1600115
G Mta2 metastasis associated 1 family, member 2 JBrowse link 1 225,140,863 225,149,584 RGD:1624291
RGD:13792537
G Mta3 metastasis associated 1 family, member 3 JBrowse link 6 6,904,449 7,036,929 RGD:1624291
RGD:13792537
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
RGD:1600115
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:1624291
RGD:1600115
G Sall1 spalt-like transcription factor 1 JBrowse link 19 23,387,737 23,405,025 RGD:1624291
G Zbtb7a zinc finger and BTB domain containing 7a JBrowse link 7 11,429,266 11,446,119 RGD:1600115
RGD:1624291
Sin3 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:1624291
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
RGD:1600115
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
RGD:1600115
G Ing2 inhibitor of growth family, member 2 JBrowse link 16 47,714,756 47,725,836 RGD:1624291
RGD:1600115
G Morf4l1 mortality factor 4 like 1 JBrowse link 8 97,473,454 97,494,974 RGD:1624291
RGD:1600115
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:1624291
RGD:13792537
RGD:1600115
G Phf12 PHD finger protein 12 JBrowse link 10 64,815,462 64,863,514 RGD:1624291
RGD:1600115
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:1624291
RGD:13792537
G Sin3b SIN3 transcription regulator family member B JBrowse link 16 18,842,456 18,860,086 RGD:13792537
G Sinhcaf SIN3-HDAC complex associated factor JBrowse link 4 183,401,314 183,426,439 RGD:1624291
RGD:13792537
G Suds3 SDS3 homolog, SIN3A corepressor complex component JBrowse link 12 45,199,012 45,221,507 RGD:1624291
Sin3-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brms1 BRMS1, transcriptional repressor and anoikis regulator JBrowse link 1 220,325,352 220,334,616 RGD:13792537
G Brms1l BRMS1 like transcriptional repressor JBrowse link 6
6
76,675,399
76,743,243
76,708,261
76,753,950
RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:13792537
G Hdac1l histone deacetylase 1-like JBrowse link 9 84,893,145 84,894,599 RGD:13792537
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:13792537
G LOC108348098 breast cancer metastasis-suppressor 1 homolog JBrowse link 1 220,418,455 220,427,785 RGD:13792537
G Phf12 PHD finger protein 12 JBrowse link 10 64,815,462 64,863,514 RGD:13792537
G Sap130 Sin3A associated protein 130 JBrowse link 18 24,397,523 24,497,831 RGD:13792537
G Suds3 SDS3 homolog, SIN3A corepressor complex component JBrowse link 12 45,199,012 45,221,507 RGD:13792537
Swr1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr6 actin related protein 6 JBrowse link 7 30,377,369 30,397,922 RGD:13792537
G Anp32e acidic nuclear phosphoprotein 32 family member E JBrowse link 2 198,040,573 198,057,005 RGD:1624291
RGD:1600115
G Brd8 bromodomain containing 8 JBrowse link 18 27,375,645 27,423,989 RGD:1624291
RGD:1600115
G Dmap1 DNA methyltransferase 1-associated protein 1 JBrowse link 5 136,533,791 136,541,795 RGD:13792537
G Ep400 E1A binding protein p400 JBrowse link 12 51,948,650 52,055,274 RGD:1624291
RGD:1600115
G Ing3 inhibitor of growth family, member 3 JBrowse link 4 49,017,235 49,044,450 RGD:1624291
RGD:1600115
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:1600115
RGD:1624291
G RGD1564855 similar to RuvB-like protein 1 JBrowse link X 1,854,580 1,856,333 RGD:13792537
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:1624291
RGD:13792537
RGD:1600115
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:1624291
RGD:13792537
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:13792537
G Trrap transformation/transcription domain-associated protein JBrowse link 12 11,537,950 11,627,563 RGD:1624291
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18523
    cellular anatomical entity 18191
      nucleoplasm 3361
        histone deacetylase complex 72
          Clr6 histone deacetylase complex I'' 0
          HDA1 complex 0
          NuRD complex 16
          Rpd3L-Expanded complex 0
          SHREC complex 0
          SHREC2 complex 0
          Set3 complex 0
          Sin3-type complex + 17
          Snt2C complex 0
          Swr1 complex 13
Path 2
Term Annotations click to browse term
  cellular_component 18523
    cellular anatomical entity 18191
      organelle 11871
        intracellular organelle 11360
          intracellular membrane-bounded organelle 9678
            nucleus 6601
              nuclear lumen 3970
                nucleoplasm 3361
                  histone deacetylase complex 72
                    Clr6 histone deacetylase complex I'' 0
                    HDA1 complex 0
                    NuRD complex 16
                    Rpd3L-Expanded complex 0
                    SHREC complex 0
                    SHREC2 complex 0
                    Set3 complex 0
                    Sin3-type complex + 17
                    Snt2C complex 0
                    Swr1 complex 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.