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ONTOLOGY REPORT - ANNOTATIONS

Term:histone deacetylase complex
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Accession:GO:0000118 term browser browse the term
Definition:A protein complex that possesses histone deacetylase activity.
Comment:Note that this term represents a location, not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function of this complex is represented by the molecular function term 'histone deacetylase activity ; GO:0004407'.
Synonyms:exact_synonym: HDAC complex

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histone deacetylase complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbx5 chromobox 5 part_of ISO (MGI:4359370|PMID:12242305) BHF-UCL PMID:12242305 MGI:4359370 NCBI chrNW_004955458:1,486,951...1,529,649
Ensembl chrNW_004955458:1,486,951...1,505,653 		JBrowse link
G Dnttip1 deoxynucleotidyltransferase terminal interacting protein 1 part_of ISO (PMID:25653165) UniProt PMID:25653165 NCBI chrNW_004955445:11,479,582...11,501,008
Ensembl chrNW_004955445:11,479,582...11,501,008 		JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:9651585)
(PMID:14645126)		 UniProt
MGI		 PMID:9651585 PMID:14645126 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864 		JBrowse link
G Hdac10 histone deacetylase 10 part_of ISO (PMID:11861901) UniProt PMID:11861901 NCBI chrNW_004955413:33,272,600...33,277,893
Ensembl chrNW_004955413:33,272,714...33,277,686 		JBrowse link
G Hdac11 histone deacetylase 11 part_of ISO (PMID:11948178) UniProt PMID:11948178 NCBI chrNW_004955429:12,890,939...12,907,749
Ensembl chrNW_004955429:12,890,879...12,907,749 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO (PMID:9651585) UniProt PMID:9651585 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707 		JBrowse link
G Hdac3 histone deacetylase 3 part_of ISO (PMID:18326024) UniProt PMID:18326024 NCBI chrNW_004955415:12,138,520...12,154,234
Ensembl chrNW_004955415:12,138,870...12,154,234 		JBrowse link
G Hdac4 histone deacetylase 4 part_of ISO (PMID:11804585) BHF-UCL PMID:11804585 NCBI chrNW_004955542:1,629,691...1,886,160
Ensembl chrNW_004955542:1,629,691...1,886,210 		JBrowse link
G Hdac6 histone deacetylase 6 part_of ISO (PMID:11948178) UniProt PMID:11948178 NCBI chrNW_004955543:348,314...378,391
Ensembl chrNW_004955543:348,019...378,071 		JBrowse link
G Hint1 histidine triad nucleotide binding protein 1 part_of ISO (PMID:16835243) UniProt PMID:16835243 NCBI chrNW_004955408:2,673,950...2,678,528
Ensembl chrNW_004955408:2,674,109...2,678,528 		JBrowse link
G Hr HR lysine demethylase and nuclear receptor corepressor ISO matrix-associated deacetylase (MAD) bodies RGD PMID:11641275 RGD:1599577 NCBI chrNW_004955403:45,605,870...45,624,386
Ensembl chrNW_004955403:45,605,510...45,624,402 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 part_of ISO (PMID:11274056) MGI PMID:11274056 NCBI chrNW_004955402:38,761,668...38,829,830
Ensembl chrNW_004955402:38,767,419...38,830,204 		JBrowse link
G Mecom MDS1 and EVI1 complex locus located_in ISO (PMID:11568182) UniProt PMID:11568182 NCBI chrNW_004955448:18,259,847...18,542,085
Ensembl chrNW_004955448:18,259,083...18,439,646 		JBrowse link
G Mta2 metastasis associated 1 family member 2 part_of ISO (PMID:10444591) MGI PMID:10444591 NCBI chrNW_004955599:587,369...595,582
Ensembl chrNW_004955599:587,425...595,060 		JBrowse link
G Ncor1 nuclear receptor corepressor 1 part_of ISO (PMID:18326024) UniProt PMID:18326024 NCBI chrNW_004955467:1,408,292...1,568,539
Ensembl chrNW_004955467:1,409,281...1,546,842 		JBrowse link
G Ncor2 nuclear receptor corepressor 2 part_of ISO (PMID:15832170) MGI PMID:15832170 NCBI chrNW_004955482:4,927,482...5,031,848
Ensembl chrNW_004955482:4,942,221...5,031,904 		JBrowse link
G Nrip1 nuclear receptor interacting protein 1 part_of ISO (MGI:3688074|PMID:11278635) UniProt PMID:11278635 MGI:3688074 NCBI chrNW_004955407:16,740,253...16,820,297
Ensembl chrNW_004955407:16,740,253...16,820,297 		JBrowse link
G Phf21a PHD finger protein 21A part_of ISO (PMID:15325272) MGI PMID:15325272 NCBI chrNW_004955422:1,857,335...2,045,816
Ensembl chrNW_004955422:1,857,335...2,045,816 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor part_of ISO (PMID:9651585) UniProt PMID:9651585 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor part_of ISO (PMID:9651585) UniProt PMID:9651585 NCBI chrNW_004955519:1,460,199...1,482,699 JBrowse link
G Rere arginine-glutamic acid dipeptide repeats part_of ISO (PMID:14645126) MGI PMID:14645126 NCBI chrNW_004955486:4,303,573...4,695,800
Ensembl chrNW_004955486:4,443,723...4,695,800 		JBrowse link
G Sap30 Sin3A associated protein 30 part_of ISO (PMID:9651585) UniProt PMID:9651585 NCBI chrNW_004955403:33,633,028...33,639,271
Ensembl chrNW_004955403:33,633,236...33,638,983 		JBrowse link
G Sap30l SAP30 like part_of ISO (PMID:18070604) UniProt PMID:18070604 NCBI chrNW_004955408:8,827,744...8,832,588
Ensembl chrNW_004955408:8,827,738...8,832,588 		JBrowse link
G Satb2 SATB homeobox 2 part_of ISO (PMID:18255031) MGI PMID:18255031 NCBI chrNW_004955403:1,663,676...1,811,088
Ensembl chrNW_004955403:1,663,676...1,811,109 		JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of ISO (PMID:9651585) UniProt PMID:9651585 NCBI chrNW_004955450:2,804,551...2,870,450
Ensembl chrNW_004955450:2,808,130...2,870,450 		JBrowse link
G Tbl1x transducin beta like 1 X-linked part_of ISO (PMID:18326024) UniProt PMID:18326024 NCBI chrNW_004955499:7,706,973...7,896,168 JBrowse link
G Tbl1xr1 TBL1X/Y related 1 part_of ISO (PMID:18326024) UniProt PMID:18326024 NCBI chrNW_004955420:6,546,529...6,705,481
Ensembl chrNW_004955420:6,546,529...6,705,487 		JBrowse link
G Znf217 zinc finger protein 217 part_of ISO (PMID:18625718) UniProt PMID:18625718 NCBI chrNW_004955445:5,326,905...5,337,573 JBrowse link
G Znf541 zinc finger protein 541 part_of ISO (MGI:3831251|PMID:18849567) UniProt PMID:18849567 MGI:3831251 NCBI chrNW_004955574:1,357,610...1,406,371
Ensembl chrNW_004955574:1,358,123...1,384,985 		JBrowse link
NuRD complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2ap1 cyclin dependent kinase 2 associated protein 1 part_of ISO (PMID:20523938), (PMID:33283408) UniProt PMID:20523938 PMID:33283408 NCBI chrNW_004955482:5,588,683...5,593,896
Ensembl chrNW_004955482:5,588,674...5,593,896 		JBrowse link
G Cdk2ap2 cyclin dependent kinase 2 associated protein 2 part_of ISO (PMID:33283408) UniProt PMID:33283408 NCBI chrNW_004955422:17,981,267...17,983,480
Ensembl chrNW_004955422:17,981,267...17,984,517 		JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 part_of ISO (PMID:27068747)
(PMID:10204490)
(PMID:17827154), (PMID:33283408)		 UniProt
MGI		 PMID:10204490 PMID:17827154 PMID:27068747 PMID:33283408 NCBI chrNW_004955467:9,024,112...9,050,062
Ensembl chrNW_004955467:9,029,265...9,050,718 		JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 part_of ISO (PMID:19644445), (PMID:33283408)
(PMID:22075476)		 UniProt
MGI		 PMID:19644445 PMID:22075476 PMID:33283408 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 part_of ISO (MGI:5559665|PMID:21931736) UniProt PMID:21931736 MGI:5559665 NCBI chrNW_004955486:6,320,380...6,369,020
Ensembl chrNW_004955486:6,320,380...6,369,065 		JBrowse link
G Gatad2a GATA zinc finger domain containing 2A part_of ISO (PMID:12183469), (PMID:33283408) UniProt PMID:12183469 PMID:33283408 NCBI chrNW_004955524:2,439,594...2,506,539
Ensembl chrNW_004955524:2,439,594...2,506,538 		JBrowse link
G Gatad2b GATA zinc finger domain containing 2B part_of ISO (PMID:33283408) UniProt PMID:33283408 NCBI chrNW_004955545:424,997...519,031
Ensembl chrNW_004955545:430,245...517,790 		JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:17827154), (PMID:19644445), (PMID:22926524), (PMID:33283408)
(PMID:11836251), (PMID:22075476)
(PMID:16462733)
(PMID:14645126)		 BHF-UCL
MGI		 PMID:11836251 PMID:14645126 PMID:16462733 PMID:17827154 PMID:19644445 More... NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO (PMID:17827154), (PMID:19644445), (PMID:22926524), (PMID:33283408) BHF-UCL PMID:17827154 PMID:19644445 PMID:22926524 PMID:33283408 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707 		JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 part_of ISO (PMID:33283408) UniProt PMID:33283408 NCBI chrNW_004955402:38,761,668...38,829,830
Ensembl chrNW_004955402:38,767,419...38,830,204 		JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 part_of ISO (PMID:33283408)
(PMID:16462733)		 UniProt
MGI		 PMID:16462733 PMID:33283408 NCBI chrNW_004955495:6,385,449...6,388,911
Ensembl chrNW_004955495:6,336,367...6,389,056 		JBrowse link
G Mta1 metastasis associated 1 part_of ISO (PMID:22926524), (PMID:33283408)
(PMID:16462733)		 UniProt
MGI		 PMID:16462733 PMID:22926524 PMID:33283408 NCBI chrNW_004955538:3,630,383...3,671,005
Ensembl chrNW_004955538:3,634,341...3,671,005 		JBrowse link
G Mta2 metastasis associated 1 family member 2 part_of ISO (PMID:19644445), (PMID:22926524), (PMID:33283408)
(PMID:16462733)
(PMID:14645126)		 UniProt
MGI		 PMID:14645126 PMID:16462733 PMID:19644445 PMID:22926524 PMID:33283408 NCBI chrNW_004955599:587,369...595,582
Ensembl chrNW_004955599:587,425...595,060 		JBrowse link
G Mta3 metastasis associated 1 family member 3 part_of ISO (PMID:22926524), (PMID:33283408) BHF-UCL PMID:22926524 PMID:33283408 NCBI chrNW_004955441:9,965,727...10,108,467
Ensembl chrNW_004955441:9,965,500...10,108,467 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor part_of ISO (PMID:19644445), (PMID:22926524), (PMID:33283408)
(PMID:14645126)		 UniProt
MGI		 PMID:14645126 PMID:19644445 PMID:22926524 PMID:33283408 NCBI chrNW_004955452:10,955,399...10,975,036
Ensembl chrNW_004955452:10,955,399...10,975,036 		JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor part_of ISO (PMID:19644445), (PMID:22926524), (PMID:33283408)
(PMID:14645126)		 UniProt
MGI		 PMID:14645126 PMID:19644445 PMID:22926524 PMID:33283408 NCBI chrNW_004955519:1,460,199...1,482,699 JBrowse link
G Sall1 spalt like transcription factor 1 part_of ISO (PMID:11836251) MGI PMID:11836251 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171 		JBrowse link
Sin3-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csnk2a1 casein kinase 2 alpha 1 part_of ISO (PMID:17827154) BHF-UCL PMID:17827154 NCBI chrNW_004955597:326,601...397,112 JBrowse link
G Hdac1 histone deacetylase 1 part_of ISO (PMID:17827154) BHF-UCL PMID:17827154 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864 		JBrowse link
G Hdac2 histone deacetylase 2 part_of ISO (PMID:14966270), (PMID:17827154) BHF-UCL PMID:14966270 PMID:17827154 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707 		JBrowse link
G Ing2 inhibitor of growth family member 2 part_of ISO (PMID:16387653) UniProt PMID:16387653 NCBI chrNW_004955403:25,325,600...25,331,175
Ensembl chrNW_004955403:25,325,600...25,331,175 		JBrowse link
G Morf4l1 mortality factor 4 like 1 part_of ISO (PMID:14966270) UniProt PMID:14966270 NCBI chrNW_004955533:14,770...28,290
Ensembl chrNW_004955533:14,730...27,643 		JBrowse link
G Phf12 PHD finger protein 12 part_of ISO (PMID:22048773) MGI PMID:22048773 NCBI chrNW_004955481:4,223,803...4,268,640
Ensembl chrNW_004955481:4,223,808...4,268,640 		JBrowse link
G Sin3a SIN3 transcription regulator family member A part_of ISO (PMID:14966270), (PMID:17827154) UniProt PMID:14966270 PMID:17827154 NCBI chrNW_004955450:2,804,551...2,870,450
Ensembl chrNW_004955450:2,808,130...2,870,450 		JBrowse link
G Sinhcaf SIN3-HDAC complex associated factor part_of ISO (PMID:22984288) UniProt PMID:22984288 NCBI chrNW_004955505:4,344,465...4,377,463
Ensembl chrNW_004955505:4,365,386...4,379,232 		JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component part_of ISO (MGI:2670031|PMID:11909966) UniProt PMID:11909966 MGI:2670031 NCBI chrNW_004955455:12,981,899...13,017,194
Ensembl chrNW_004955455:12,981,194...13,017,194 		JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32e acidic nuclear phosphoprotein 32 family member E part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955413:531,716...550,480
Ensembl chrNW_004955413:531,970...548,294 		JBrowse link
G Brd8 bromodomain containing 8 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955418:2,232,853...2,275,812
Ensembl chrNW_004955418:2,232,842...2,275,875 		JBrowse link
G Ep400 E1A binding protein p400 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955482:639,316...746,331
Ensembl chrNW_004955482:641,214...746,331 		JBrowse link
G Ing3 inhibitor of growth family member 3 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955479:2,741,554...2,771,524
Ensembl chrNW_004955479:2,743,655...2,774,247 		JBrowse link
G Kat5 lysine acetyltransferase 5 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955422:19,557,498...19,565,044
Ensembl chrNW_004955422:19,557,498...19,565,036 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955429:15,598,465...15,632,290
Ensembl chrNW_004955429:15,598,465...15,633,713 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955559:1,657,241...1,674,272
Ensembl chrNW_004955559:1,654,059...1,674,272 		JBrowse link
G Trrap transformation/transcription domain associated protein part_of ISO (PMID:24463511) UniProt PMID:24463511 NCBI chrNW_004955460:14,641,891...14,761,641
Ensembl chrNW_004955460:14,644,133...14,760,787 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12554
    protein-containing complex 4416
      catalytic complex 1326
        histone deacetylase complex 54
          HDA1 complex 0
          NuRD complex + 17
          Rpd3L-Expanded complex 0
          Set3 complex 0
          Sin3-type complex + 9
          Snt2C complex 0
          Swr1 complex 8
Path 2
Term Annotations click to browse term
  cellular_component 12554
    cellular anatomical entity 12397
      organelle 9788
        intracellular organelle 9421
          intracellular membrane-bounded organelle 8477
            nucleus 5235
              nuclear lumen 3565
                nucleoplasm 3197
                  histone deacetylase complex 54
                    HDA1 complex 0
                    NuRD complex + 17
                    Rpd3L-Expanded complex 0
                    Set3 complex 0
                    Sin3-type complex + 9
                    Snt2C complex 0
                    Swr1 complex 8
paths to the root