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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagosome assembly
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Accession:GO:0000045 term browser browse the term
Definition:The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm.
Synonyms:exact_synonym: autophagic vacuole assembly;   autophagosome biosynthesis;   autophagosome formation
 narrow_synonym: PAS formation
 related_synonym: autophagic vacuole formation


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autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936562:2,493,823...2,676,868
Ensembl chrNW_004936562:2,493,774...2,676,912
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:246,335...250,278
Ensembl chrNW_004936543:246,335...254,975
JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:30930081) MGI
Ensembl
PMID:30930081 GO_REF:0000107 NCBI chrNW_004936765:1,112,333...1,123,244
Ensembl chrNW_004936765:1,111,882...1,123,316
JBrowse link
G Atg10 autophagy related 10 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:1,241,854...1,506,174
Ensembl chrNW_004936469:1,242,111...1,505,743
JBrowse link
G Atg101 autophagy related 101 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:9,518,128...9,525,986
Ensembl chrNW_004936512:9,518,074...9,526,961
JBrowse link
G Atg12 autophagy related 12 involved_in IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936742:1,000,029...1,007,885
Ensembl chrNW_004936742:999,771...1,007,885
JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19211835) MGI
Ensembl
InterPro
PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232
JBrowse link
G Atg14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:155,709...195,860
Ensembl chrNW_004936495:154,593...195,917
JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in IEA InterPro
TreeGrafter
Ensembl
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514
JBrowse link
G Atg16l2 autophagy related 16 like 2 involved_in
NOT|involved_in
IEA
ISO
(PMID:22082872) Ensembl
UniProt
InterPro
PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936498:2,070,985...2,084,141
Ensembl chrNW_004936498:2,070,881...2,083,968
JBrowse link
G Atg2a autophagy related 2A involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178
JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936604:583,391...641,217
Ensembl chrNW_004936604:584,480...641,183
JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21220506) Ensembl
TreeGrafter
MGI
PMID:21220506 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936536:232,343...257,949
Ensembl chrNW_004936536:232,192...257,954
JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936499:6,641,192...6,691,685
Ensembl chrNW_004936499:6,640,957...6,691,995
JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746
JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936692:439,475...532,633
Ensembl chrNW_004936692:439,280...532,657
JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521
JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23704209) RGD
MGI
Ensembl
PMID:16420522 PMID:23704209 GO_REF:0000107 RGD:1643189 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420
JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23704209) Ensembl
TreeGrafter
MGI
PMID:23704209 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256
JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15755735), (PMID:22456507)
(PMID:23402761)
(PMID:22456507)
MGI
Ensembl
PMID:15755735 PMID:22456507 PMID:23402761 GO_REF:0000107 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815
JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15755735) MGI
Ensembl
PMID:15755735 GO_REF:0000107 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511
JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:3,300,941...3,357,595
Ensembl chrNW_004936558:3,300,941...3,357,941
JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
UniProt
PMID:16420522 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1643189 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151
JBrowse link
G Becn2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936526:8,532,991...8,534,271
Ensembl chrNW_004936526:8,533,009...8,534,271
JBrowse link
G Ctsd cathepsin D involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15452145) Ensembl
MGI
PMID:15452145 GO_REF:0000107 NCBI chrNW_004936816:680,798...690,959
Ensembl chrNW_004936816:680,798...691,039
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936704:653,434...736,660
Ensembl chrNW_004936704:653,403...739,151
JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936677:367,364...368,268
Ensembl chrNW_004936677:367,341...368,265
JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24430976) Ensembl
MGI
PMID:24430976 GO_REF:0000107 NCBI chrNW_004936625:761,013...819,826
Ensembl chrNW_004936625:738,124...821,566
JBrowse link
G LOC101958458 T-cell-specific guanine nucleotide triphosphate-binding protein 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936826:912,414...918,490 JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G LOC101973519 interferon-inducible GTPase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:4,125,169...4,127,174 JBrowse link
G LOC101976670 ubiquitin-like protein ATG12 involved_in IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936673:2,861,475...2,862,529 JBrowse link
G LOC106144852 interferon-inducible GTPase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936504:4,173,569...4,181,993 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,104,748...6,106,348
Ensembl chrNW_004936561:6,104,742...6,106,699
JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:23695157) Ensembl
MGI
PMID:23695157 GO_REF:0000107 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389
JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:17,217,462...17,238,253
Ensembl chrNW_004936485:17,217,462...17,238,628
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23455425) MGI
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chrNW_004936621:172,727...206,803
Ensembl chrNW_004936621:175,387...206,662
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:24098492) RGD
TreeGrafter
MGI
Ensembl
PMID:12453151 PMID:24098492 GO_REF:0000107 GO_REF:0000118 RGD:2303129 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422
JBrowse link
G Psen1 presenilin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15452145) Ensembl
MGI
PMID:15452145 GO_REF:0000107 NCBI chrNW_004936488:2,464,623...2,528,807
Ensembl chrNW_004936488:2,464,527...2,530,065
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:22939626) UniProt PMID:22939626 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:4,095,829...4,127,714
Ensembl chrNW_004936476:4,095,329...4,127,701
JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:8,167,567...8,183,105
Ensembl chrNW_004936535:8,167,551...8,183,111
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:297,600...304,929
Ensembl chrNW_004936798:296,066...305,176
JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA Ensembl
TreeGrafter
InterPro
GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:260,685...335,143
Ensembl chrNW_004936590:260,685...334,721
JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936569:654,904...676,012
Ensembl chrNW_004936569:657,071...675,292
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936531:8,555,966...8,562,829
Ensembl chrNW_004936531:8,555,637...8,562,885
JBrowse link
G Stx12 syntaxin 12 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,019,099...12,057,028
Ensembl chrNW_004936474:12,019,041...12,060,213
JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chrNW_004936869:321,821...461,253 JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23908015) Ensembl
MGI
PMID:23908015 GO_REF:0000107 NCBI chrNW_004936599:2,070,211...2,079,169
Ensembl chrNW_004936599:2,066,847...2,079,206
JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936528:8,824,964...8,842,483
Ensembl chrNW_004936528:8,814,873...8,845,167
JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:7,882,710...7,891,668
Ensembl chrNW_004936544:7,881,102...7,891,463
JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936561:5,984,044...5,992,536
Ensembl chrNW_004936561:5,984,079...5,992,536
JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:1,857,685...1,874,973
Ensembl chrNW_004936533:1,857,666...1,876,120
JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856
JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936828:543,651...588,673
Ensembl chrNW_004936828:542,407...588,679
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920
JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:7,969,271...7,978,537
Ensembl chrNW_004936493:7,971,960...7,985,314
JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936496:4,520,334...4,564,358
Ensembl chrNW_004936496:4,532,714...4,559,562
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080
JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936821:1,051,247...1,162,500
Ensembl chrNW_004936821:1,051,053...1,162,735
JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:33,807,825...33,814,520
Ensembl chrNW_004936471:33,807,010...33,814,573
JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:3,532,985...3,648,009
Ensembl chrNW_004936490:3,532,985...3,647,967
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731
JBrowse link
G Wdr45b WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936923:173,515...192,616
Ensembl chrNW_004936923:173,515...192,580
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822
JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323
JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27994061) Ensembl
MGI
PMID:27994061 GO_REF:0000107 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23918802) Ensembl
MGI
PMID:23918802 GO_REF:0000107 NCBI chrNW_004936727:1,648,451...1,663,294
Ensembl chrNW_004936727:1,648,448...1,663,455
JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:1,871,808...1,917,370
Ensembl chrNW_004936743:1,871,664...1,903,245
JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936663:1,576,311...1,637,363
Ensembl chrNW_004936663:1,576,269...1,623,296
JBrowse link
G LOC101959716 transmembrane protein 39A-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936531:7,196,458...7,198,575 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936607:628,469...761,117
Ensembl chrNW_004936607:626,991...761,123
JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23695157) Ensembl
TreeGrafter
MGI
PMID:23695157 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936714:1,792,893...1,870,338
Ensembl chrNW_004936714:1,792,845...1,870,389
JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709
JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936595:528,832...533,212
Ensembl chrNW_004936595:528,516...533,235
JBrowse link
G Pink1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,574,471...6,589,478
Ensembl chrNW_004936474:6,573,623...6,589,478
JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936494:5,410,219...5,501,687
Ensembl chrNW_004936494:5,410,269...5,501,498
JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936872:294,116...313,893
Ensembl chrNW_004936872:294,066...313,293
JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,838,974...1,848,742
Ensembl chrNW_004936741:1,838,834...1,844,459
JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936536:6,376,539...6,406,314 JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,417,810...4,437,639
Ensembl chrNW_004936599:4,417,900...4,437,178
JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256
JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151
JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936704:653,434...736,660
Ensembl chrNW_004936704:653,403...739,151
JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,181,009...15,217,952
Ensembl chrNW_004936487:15,180,811...15,217,406
JBrowse link
G Moap1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:1,111,256...1,113,651
Ensembl chrNW_004936733:1,111,958...1,113,010
JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:5,383,737...5,540,176
Ensembl chrNW_004936520:5,383,737...5,540,203
JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,168,951...14,201,712
Ensembl chrNW_004936490:14,168,981...14,202,108
JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,737,088...1,748,056
Ensembl chrNW_004936646:1,737,034...1,748,057
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,642,240...40,727,831
Ensembl chrNW_004936469:40,641,928...40,727,837
JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936650:1,944,291...2,054,847
Ensembl chrNW_004936650:1,944,346...2,056,665
JBrowse link
G Ralb RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:50,237,804...50,279,483
Ensembl chrNW_004936469:50,236,409...50,279,583
JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936732:2,066,848...2,097,947
Ensembl chrNW_004936732:2,067,204...2,097,631
JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004936480:13,108,510...13,137,550 JBrowse link
G Snx30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:684,536...792,829
Ensembl chrNW_004936559:690,397...792,835
JBrowse link
G Snx4 sorting nexin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004937215:127,074...137,281 JBrowse link
G Snx7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:940,282...1,022,903
Ensembl chrNW_004936537:940,724...1,022,887
JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004936660:2,160,394...2,188,848
Ensembl chrNW_004936660:2,163,844...2,187,080
JBrowse link
G Wdr45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:975,113...981,149
Ensembl chrNW_004936721:975,104...981,731
JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,782,836...7,812,142
Ensembl chrNW_004936541:7,783,322...7,812,054
JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514
JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420
JBrowse link
G LOC101972667 immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004936504:4,055,091...4,056,089 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822
JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:526,467...531,278
Ensembl chrNW_004936842:524,182...530,540
JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936562:2,424,398...2,473,103
Ensembl chrNW_004936562:2,423,001...2,473,232
JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24954904) Ensembl
MGI
PMID:24954904 GO_REF:0000107 NCBI chrNW_004936525:3,973,574...4,010,442
Ensembl chrNW_004936525:3,972,558...4,010,514
JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936745:291,311...308,469
Ensembl chrNW_004936745:292,746...307,746
JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:823,318...830,642
Ensembl chrNW_004936659:823,172...830,521
JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936569:1,635,958...1,645,600
Ensembl chrNW_004936569:1,635,836...1,645,815
JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:6,445,824...6,453,582
Ensembl chrNW_004936527:6,446,667...6,453,511
JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004936689:429,907...1,080,226
Ensembl chrNW_004936689:430,293...1,079,838
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23455425) MGI
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chrNW_004936474:767,754...795,258
Ensembl chrNW_004936474:767,671...796,556
JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23455425) MGI
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chrNW_004936621:172,727...206,803
Ensembl chrNW_004936621:175,387...206,662
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24098492) Ensembl
MGI
PMID:24098492 GO_REF:0000107 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422
JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23455425) MGI
Ensembl
PMID:23455425 GO_REF:0000107 NCBI chrNW_004936524:8,324,562...8,381,244
Ensembl chrNW_004936524:8,324,569...8,376,114
JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24954904) Ensembl
MGI
PMID:24954904 GO_REF:0000107 NCBI chrNW_004936765:909,118...946,788
Ensembl chrNW_004936765:907,877...946,822
JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,074,655...2,101,846
Ensembl chrNW_004936611:2,078,716...2,101,881
JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180
JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect
IEA
ISO
(PMID:33280498) Ensembl
UniProt
PMID:33280498 GO_REF:0000107 NCBI chrNW_004936777:434,729...447,778
Ensembl chrNW_004936777:434,692...447,780
JBrowse link
G Ephb2 EPH receptor B2 involved_in
acts_upstream_of_positive_effect
IEA
ISO
(PMID:33280498) Ensembl
UniProt
PMID:33280498 GO_REF:0000107 NCBI chrNW_004936474:8,109,800...8,203,106
Ensembl chrNW_004936474:8,109,031...8,203,106
JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004936720:1,041,216...1,168,725
Ensembl chrNW_004936720:1,041,211...1,168,748
JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937211:67,199...92,204
Ensembl chrNW_004937211:55,221...92,040
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:158,376...282,310
Ensembl chrNW_004936474:157,590...282,342
JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936950:242,071...323,204
Ensembl chrNW_004936950:242,522...320,078
JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,317,258...3,324,208
Ensembl chrNW_004936599:3,317,258...3,324,213
JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004936474:5,947,077...5,947,772 JBrowse link
G Rnf5 ring finger protein 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23093945) Ensembl
MGI
PMID:23093945 GO_REF:0000107 NCBI chrNW_004936727:1,422,207...1,424,808
Ensembl chrNW_004936727:1,422,207...1,424,739
JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,761,034...18,864,578
Ensembl chrNW_004936477:18,761,477...18,859,988
JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:530,833...534,185
Ensembl chrNW_004936819:532,037...533,920
JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936750:1,381,864...1,406,736
Ensembl chrNW_004936750:1,381,851...1,407,323
JBrowse link
G Stbd1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936676:300,244...304,206
Ensembl chrNW_004936676:299,963...304,213
JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:5,073,274...5,103,733
Ensembl chrNW_004936492:5,073,191...5,103,739
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16019
    cellular process 15627
      cellular component organization or biogenesis 6541
        cellular component organization 6348
          organelle organization 3448
            organelle assembly 1020
              autophagosome assembly 111
                engulfment of target by autophagosome 1
                negative regulation of autophagosome assembly 14
                positive regulation of autophagosome assembly 21
                protein lipidation involved in autophagosome assembly 4
                protein localization to phagophore assembly site 13
                regulation of autophagosome assembly + 48
                substrate localization to autophagosome 3
Path 2
Term Annotations click to browse term
  biological_process 16019
    cellular process 15627
      metabolic process 9955
        catabolic process 2413
          autophagy 514
            macroautophagy 316
              autophagosome organization 120
                autophagosome assembly 111
                  engulfment of target by autophagosome 1
                  negative regulation of autophagosome assembly 14
                  positive regulation of autophagosome assembly 21
                  protein lipidation involved in autophagosome assembly 4
                  protein localization to phagophore assembly site 13
                  regulation of autophagosome assembly + 48
                  substrate localization to autophagosome 3
paths to the root