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ONTOLOGY REPORT - ANNOTATIONS


Term:very long-chain fatty acid metabolic process
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Accession:GO:0000038 term browser browse the term
Definition:The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22.
Synonyms:exact_synonym: very-long-chain fatty acid metabolism


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very long-chain fatty acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in ISO
ISS
(MGI:3513562|PMID:15489218)
GO_REF:0000024
(PMID:29397936)
RGD
UniProt
PMID:15489218 PMID:29397936 GO_REF:0000024 MGI:3513562 NCBI chr  X:157,073,860...157,095,652
Ensembl chr  X:157,072,736...157,095,274
JBrowse link
G Abcd2 ATP binding cassette subfamily D member 2 involved_in ISO
IMP
ISS
(PMID:10196381), (PMID:29397936)
PMID:21209459
GO_REF:0000024
RGD
UniProt
PMID:10196381 PMID:29397936, PMID:21209459 GO_REF:0000024, RGD:127285396 NCBI chr 7:132,294,564...132,343,169
Ensembl chr 7:132,294,562...132,343,169
JBrowse link
G Abcd3 ATP binding cassette subfamily D member 3 involved_in ISO (PMID:29397936) RGD PMID:29397936 NCBI chr 2:225,335,708...225,389,120
Ensembl chr 2:225,335,718...225,389,120
JBrowse link
G Acaa1a acetyl-CoA acyltransferase 1A involved_in ISO (PMID:2318981) RGD PMID:2318981 NCBI chr 8:128,027,880...128,036,471
Ensembl chr 8:128,027,958...128,036,236
JBrowse link
G Acot1 acyl-CoA thioesterase 1 involved_in ISO (PMID:16940157) RGD PMID:16940157 NCBI chr 6:107,485,088...107,493,082
Ensembl chr 6:107,485,249...107,493,798
JBrowse link
G Acot2 acyl-CoA thioesterase 2 involved_in ISO (PMID:16940157) RGD PMID:16940157 NCBI chr 6:107,460,596...107,468,324
Ensembl chr 6:107,460,668...107,467,487
JBrowse link
G Acot3 acyl-CoA thioesterase 3 involved_in ISO (MGI:3663233|PMID:16940157) RGD PMID:16940157 MGI:3663233 NCBI chr 6:107,531,508...107,537,446
Ensembl chr 6:107,531,528...107,536,789
JBrowse link
G Acot4 acyl-CoA thioesterase 4 involved_in ISO (PMID:16940157) RGD PMID:16940157 NCBI chr 6:107,517,668...107,522,952
Ensembl chr 6:107,517,668...107,522,952
JBrowse link
G Acot5 acyl-CoA thioesterase 5 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:107,550,904...107,557,688
Ensembl chr 6:107,550,904...107,557,688
JBrowse link
G Acox1 acyl-CoA oxidase 1 involved_in ISO
IBA
(PMID:18536048)
PMID:21873635
RGD PMID:18536048, PMID:21873635 RGD:13792537 NCBI chr10:104,724,534...104,748,003
Ensembl chr10:104,722,958...104,748,050
JBrowse link
G Acox2 acyl-CoA oxidase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:18,449,304...18,481,472
Ensembl chr15:18,451,144...18,481,470
JBrowse link
G Acsbg1 acyl-CoA synthetase bubblegum family member 1 involved_in ISO
IEA
ISS
(PMID:10954726)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
HGNC-UCL
PMID:10954726 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:59,184,111...59,240,133
Ensembl chr 8:59,184,113...59,239,954
JBrowse link
G Acsl1 acyl-CoA synthetase long-chain family member 1 involved_in IDA
IBA
PMID:8978480
PMID:21873635
UniProt
GO_Central
PMID:8978480, PMID:21873635 RGD:14697720, RGD:13792537 NCBI chr16:48,937,456...49,003,898
Ensembl chr16:48,937,456...49,003,246
JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:39,654,771...39,717,592
Ensembl chr10:39,655,455...39,719,312
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 acts_upstream_of_or_within ISO (MGI:2153981|PMID:11567032) RGD PMID:11567032 MGI:2153981 NCBI chr17:21,382,461...21,422,413
Ensembl chr17:21,382,455...21,422,407
JBrowse link
G Hsd17b4 hydroxysteroid (17-beta) dehydrogenase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2385822 (MGI:3623834|PMID:16484321)
Ensembl
RGD
PMID:16484321 GO_REF:0000107 MGI:3623834 NCBI chr18:44,810,462...44,897,677
Ensembl chr18:44,810,388...44,897,640
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 involved_in ISO (PMID:9765053) RGD PMID:9765053 NCBI chr 2:98,251,756...98,269,185
Ensembl chr 2:98,252,925...98,269,184
JBrowse link
G Pex5 peroxisomal biogenesis factor 5 acts_upstream_of_or_within ISO MGI:2154454 (MGI:1352371|PMID:10653000) RGD PMID:10653000 MGI:1352371 NCBI chr 4:156,983,914...157,009,675
Ensembl chr 4:156,983,915...157,009,674
Ensembl chr 4:156,983,915...157,009,674
JBrowse link
G Slc27a2 solute carrier family 27 member 2 acts_upstream_of_or_within ISO (MGI:2183868|PMID:12048192) RGD PMID:12048192 MGI:2183868 NCBI chr 3:119,014,620...119,052,531
Ensembl chr 3:119,014,620...119,052,531
JBrowse link
G Slc27a4 solute carrier family 27 member 4 acts_upstream_of_or_within ISO MGI:2445864 (MGI:3576956|PMID:15653672), (MGI:3715040|PMID:17401141), (MGI:3719310|PMID:17522045) RGD PMID:15653672 PMID:17401141 PMID:17522045 MGI:3576956 MGI:3715040 MGI:3719310 NCBI chr 3:8,363,937...8,376,858
Ensembl chr 3:8,363,937...8,376,858
JBrowse link
G Slc27a5 solute carrier family 27 member 5 involved_in ISO
IBA
(PMID:10479480)
PMID:21873635
RGD PMID:10479480, PMID:21873635 RGD:13792537 NCBI chr 1:65,576,599...65,587,192
Ensembl chr 1:65,576,535...65,587,186
JBrowse link
very long-chain fatty acid beta-oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acox1 acyl-CoA oxidase 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:32169171)
Ensembl
RGD
PMID:32169171 GO_REF:0000107 NCBI chr10:104,724,534...104,748,003
Ensembl chr10:104,722,958...104,748,050
JBrowse link
very long-chain fatty acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elovl1 ELOVL fatty acid elongase 1 involved_in IBA
ISO
PMID:21873635
(PMID:20166112), (PMID:20937905)
RGD PMID:20166112 PMID:20937905, PMID:21873635 RGD:13792537 NCBI chr 5:137,255,868...137,260,486
Ensembl chr 5:137,255,908...137,260,483
JBrowse link
G Elovl2 ELOVL fatty acid elongase 2 involved_in ISO
IBA
(PMID:12371743), (PMID:20937905)
(MGI:4939101|PMID:21106902), (MGI:4943668|PMID:12371743)
PMID:21873635
RGD PMID:12371743 PMID:20937905 PMID:21106902, PMID:21873635 MGI:4939101 MGI:4943668, RGD:13792537 NCBI chr17:21,382,461...21,422,413
Ensembl chr17:21,382,455...21,422,407
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 involved_in ISO
IBA
(PMID:20937905)
(MGI:3033509|PMID:14581464)
PMID:21873635
RGD PMID:14581464 PMID:20937905, PMID:21873635 MGI:3033509, RGD:13792537 NCBI chr 1:265,883,353...265,887,181
Ensembl chr 1:265,883,355...265,887,226
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 involved_in ISO
IBA
(PMID:20937905)
PMID:21873635
RGD PMID:20937905, PMID:21873635 RGD:13792537 NCBI chr 8:91,310,690...91,338,625
Ensembl chr 8:91,310,630...91,338,843
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 involved_in IDA
IBA
ISO
PMID:12005057
PMID:21873635
(PMID:20427700), (PMID:20937905)
RGD PMID:20427700 PMID:20937905, PMID:12005057, PMID:21873635 RGD:8554529, RGD:13792537 NCBI chr 8:85,220,941...85,287,449
Ensembl chr 8:85,259,982...85,285,983
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:234,187,490...234,296,124
Ensembl chr 2:234,189,105...234,296,145
Ensembl chr 2:234,189,105...234,296,145
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:19826053), (PMID:20937905)
Ensembl
RGD
PMID:19826053 PMID:20937905, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:40,373,211...40,386,643
Ensembl chr 2:40,373,211...40,386,669
JBrowse link
G Fads2 fatty acid desaturase 2 TAS RGD PMID:11988075 RGD:70542 NCBI chr 1:225,906,582...226,152,568
Ensembl chr 1:226,114,413...226,152,524
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 involved_in IBA
ISO
PMID:21873635
(PMID:18554506)
RGD PMID:18554506, PMID:21873635 RGD:13792537 NCBI chr17:81,173,238...81,196,012
Ensembl chr17:81,173,713...81,187,739
JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 involved_in ISO
IBA
(PMID:18554506)
PMID:21873635
RGD PMID:18554506, PMID:21873635 RGD:13792537 NCBI chr11:68,985,497...68,990,023
Ensembl chr11:68,894,445...68,989,988
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 involved_in IBA
ISO
PMID:21873635
(PMID:18554506)
RGD PMID:18554506, PMID:21873635 RGD:13792537 NCBI chr 8:70,471,572...70,509,874
Ensembl chr 8:70,471,572...70,509,874
JBrowse link
G Hacd4 3-hydroxyacyl-CoA dehydratase 4 involved_in IBA
ISO
PMID:21873635
(PMID:18554506)
RGD PMID:18554506, PMID:21873635 RGD:13792537 NCBI chr 5:106,728,401...106,758,068
Ensembl chr 5:106,732,513...106,758,032
JBrowse link
G Tecr trans-2,3-enoyl-CoA reductase involved_in ISO
ISS
IBA
(PMID:12482854), (PMID:24220030)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:12482854 PMID:24220030, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr19:24,705,478...24,732,024
Ensembl chr19:24,705,481...24,732,024
JBrowse link
G Tecrl trans-2,3-enoyl-CoA reductase-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:26,662,851...26,735,878
Ensembl chr14:26,662,965...26,737,657
JBrowse link
very long-chain fatty acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 involved_in IBA
ISO
IMP
ISS
PMID:21873635
(MGI:3836690|PMID:18723473)
PMID:25043761
UniProtKB:P34230|UniProtKB:P41909 (PMID:18757502), (PMID:21145416), (PMID:9425230)
GO_REF:0000024
RGD
UniProt
PMID:9425230 PMID:18723473 PMID:18757502 PMID:21145416, PMID:21873635, PMID:25043761 GO_REF:0000024 MGI:3836690, RGD:13792537, RGD:13673760 NCBI chr  X:157,073,860...157,095,652
Ensembl chr  X:157,072,736...157,095,274
JBrowse link
G Abcd2 ATP binding cassette subfamily D member 2 involved_in IMP
ISO
ISS
IBA
IEA
PMID:25043761
(MGI:3836690|PMID:18723473)
GO_REF:0000024
PMID:21873635
UniProtKB:P41909 (PMID:21145416)
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:18723473 PMID:21145416, PMID:25043761, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3836690, RGD:13673760, RGD:13792537 NCBI chr 7:132,294,564...132,343,169
Ensembl chr 7:132,294,562...132,343,169
JBrowse link
G Abcd3 ATP binding cassette subfamily D member 3 involved_in IBA
ISO
PMID:21873635
UniProtKB:P33897 (PMID:9425230)
RGD PMID:9425230, PMID:21873635 RGD:13792537 NCBI chr 2:225,335,708...225,389,120
Ensembl chr 2:225,335,718...225,389,120
JBrowse link
G Abcd4 ATP binding cassette subfamily D member 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:108,315,026...108,329,550
Ensembl chr 6:108,315,035...108,329,464
JBrowse link
G Acot2 acyl-CoA thioesterase 2 IDA RGD PMID:7744868 RGD:2315867 NCBI chr 6:107,460,596...107,468,324
Ensembl chr 6:107,460,668...107,467,487
JBrowse link
G Slc27a2 solute carrier family 27 member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:2663647 (MGI:2662022|PMID:12719378)
PMID:21873635
Ensembl
RGD
PMID:12719378, PMID:21873635 GO_REF:0000107 MGI:2662022, RGD:13792537 NCBI chr 3:119,014,620...119,052,531
Ensembl chr 3:119,014,620...119,052,531
JBrowse link
G Slc27a4 solute carrier family 27 member 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3719310|PMID:17522045)
RGD PMID:17522045, PMID:21873635 MGI:3719310, RGD:13792537 NCBI chr 3:8,363,937...8,376,858
Ensembl chr 3:8,363,937...8,376,858
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        cellular lipid metabolic process 1018
          fatty acid metabolic process 427
            very long-chain fatty acid metabolic process 35
              very long-chain fatty acid biosynthetic process 14
              very long-chain fatty acid catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 19491
    metabolic process 11797
      cellular metabolic process 10755
        organic acid metabolic process 1010
          oxoacid metabolic process 978
            carboxylic acid metabolic process 959
              monocarboxylic acid metabolic process 659
                fatty acid metabolic process 427
                  very long-chain fatty acid metabolic process 35
                    very long-chain fatty acid biosynthetic process 14
                    very long-chain fatty acid catabolic process + 8
paths to the root