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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular response to retinoic acid
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Accession:GO:0071300 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
Synonyms:exact_synonym: cellular response to vitamin A acid



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cellular response to retinoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:19752193) RGD PMID:19752193 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr13:68,673,702...68,770,846
Ensembl chr13:68,673,722...68,839,742
JBrowse link
G Add1 adducin 1 IDA RGD PMID:20493242 RGD:5148002 NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
JBrowse link
G Afp alpha-fetoprotein IEP RGD PMID:7539613 RGD:126790586 NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 involved_in ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Ankk1 ankyrin repeat and kinase domain containing 1 IEP RGD PMID:19853839 RGD:401959583 NCBI chr 8:49,779,862...49,788,024
Ensembl chr 8:49,779,862...49,788,024
JBrowse link
G Aqp1 aquaporin 1 involved_in ISO
ISS
(PMID:12051745), (PMID:19424603)
GO_REF:0000024
RGD
UniProt
PMID:12051745 PMID:19424603 GO_REF:0000024 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Atm ATM serine/threonine kinase involved_in ISO (PMID:20876357) RGD PMID:20876357 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 IEP RGD PMID:8944660 RGD:11576286 NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
JBrowse link
G Brinp1 BMP/retinoic acid inducible neural specific 1 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:20025061)
Ensembl
GO_Central
RGD
PMID:20025061 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:82,348,501...82,550,506
Ensembl chr 5:82,348,930...82,493,150
JBrowse link
G Brinp2 BMP/retinoic acid inducible neural specific 2 involved_in IEA
IBA
ISO
GO_REF:0000107
GO_REF:0000033
(PMID:20025061)
Ensembl
GO_Central
RGD
PMID:20025061 GO_REF:0000033 GO_REF:0000107 NCBI chr13:70,431,006...70,532,766
Ensembl chr13:70,431,010...70,531,810
JBrowse link
G Brinp3 BMP/retinoic acid inducible neural specific 3 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20025061)
UniProt
GO_Central
RGD
PMID:20025061 GO_REF:0000024 GO_REF:0000033 NCBI chr13:58,413,883...58,846,828
Ensembl chr13:58,413,883...58,846,770
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:11274229 RGD:8549584 NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:1921334 PMID:21181362 RGD:2316228, RGD:8552777 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
JBrowse link
G Col1a2 collagen type I alpha 2 chain IEP RGD PMID:15234273 RGD:5688233 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:23810783 RGD:8661241 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Creb1 cAMP responsive element binding protein 1 involved_in ISO (PMID:20876357) RGD PMID:20876357 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO (PMID:18816858) RGD PMID:18816858 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Drd2 dopamine receptor D2 IEP RGD PMID:19853839 RGD:401959583 NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Eln elastin IEP RGD PMID:8238530 RGD:9585669 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:20711222 RGD:7364732 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Epha3 Eph receptor A3 involved_in IEA
ISO
GO_REF:0000107
(PMID:17910947)
Ensembl
RGD
PMID:17910947 GO_REF:0000107 NCBI chr11:1,138,485...1,474,102
Ensembl chr11:1,140,985...1,473,900
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:15389522 RGD:12801431 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Gjb3 gap junction protein, beta 3 IEP RGD PMID:8806447 RGD:12437074 NCBI chr 5:139,649,227...139,654,970
Ensembl chr 5:139,649,195...139,654,980
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO
IEA
(PMID:28122350)
GO_REF:0000107
RGD
Ensembl
PMID:28122350 GO_REF:0000107 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEP RGD PMID:16619265 RGD:5131544 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hdac2 histone deacetylase 2 IEP RGD PMID:19486889 RGD:9590233 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (PMID:23723417) RGD PMID:23723417 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxa2 homeobox A2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:23723417)
Ensembl
RGD
PMID:23723417 GO_REF:0000107 NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
JBrowse link
G Htra2 HtrA serine peptidase 2 involved_in ISO (PMID:17297443) RGD PMID:17297443 NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095
JBrowse link
G Ireb2 iron responsive element binding protein 2 IEP RGD PMID:22154532 RGD:12904026 NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
JBrowse link
G Irf1 interferon regulatory factor 1 IEP RGD PMID:15721283 RGD:5128785 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
JBrowse link
G Klf4 KLF transcription factor 4 IEP RGD PMID:19486889 RGD:9590233 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Krt13 keratin 13 IEP RGD PMID:7509732 RGD:2316552 NCBI chr10:85,051,887...85,056,099
Ensembl chr10:85,051,889...85,056,084
JBrowse link
G Lep leptin IEP RGD PMID:19212007 RGD:5128705 NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
JBrowse link
G Ltk leukocyte receptor tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:106,734,675...106,741,552
Ensembl chr 3:106,734,676...106,743,369
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 5:16,639,512...16,755,501
Ensembl chr 5:16,639,466...16,756,868
JBrowse link
G Mef2c myocyte enhancer factor 2C IDA RGD PMID:17568621 RGD:5131615 NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Meiosin meiosis initiator involved_in ISO (PMID:32032549) RGD PMID:32032549 NCBI chr 1:78,744,504...78,768,104
Ensembl chr 1:78,744,983...78,764,977
JBrowse link
G Muc1 mucin 1, cell surface associated IEP RGD PMID:8967520 RGD:633461 NCBI chr 2:174,635,989...174,640,738
Ensembl chr 2:174,635,995...174,640,733
JBrowse link
G Muc5ac mucin 5AC, oligomeric mucus/gel-forming IEP RGD PMID:8967520 RGD:633461 NCBI chr 1:196,864,336...196,896,475
Ensembl chr 1:196,864,336...196,896,475
JBrowse link
G Myb MYB proto-oncogene, transcription factor IEP RGD PMID:8670250 RGD:11532681 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor IEP RGD PMID:12873812 RGD:10059626 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Myog myogenin IEP RGD PMID:1323566 RGD:9686127 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 involved_in ISO (PMID:17297443) RGD PMID:17297443 NCBI chr16:19,526,633...19,533,567
Ensembl chr16:19,526,565...19,535,726
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10027563 RGD:2325652 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
JBrowse link
G Orm1 orosomucoid 1 IEP RGD PMID:15157739 RGD:2316642 NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:20171952) RGD PMID:20171952 NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:20171952)
UniProt
RGD
PMID:20171952 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEP RGD PMID:21519922 RGD:10428394 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Phb2 prohibitin 2 IEP RGD PMID:25031298 RGD:12903263 NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
JBrowse link
G Phc1 polyhomeotic homolog 1 acts_upstream_of_or_within ISO (PMID:8070621) RGD PMID:8070621 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma IEP RGD PMID:10797535 RGD:8553016 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 3:168,307,073...168,315,664
Ensembl chr 3:168,307,073...168,315,664
JBrowse link
G Ptk7 protein tyrosine kinase 7 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 9:14,352,155...14,418,473
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Rara retinoic acid receptor, alpha involved_in ISO (PMID:28122350) RGD PMID:28122350 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma IEP RGD PMID:11072095 RGD:1300463 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 IEP RGD PMID:24151077 RGD:329848997 NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691
JBrowse link
G Ret ret proto-oncogene involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
JBrowse link
G Rhox13 Rhox homeobox family member 13 acts_upstream_of_or_within ISO (PMID:22190708) RGD PMID:22190708 NCBI chr  X:116,911,226...116,917,758
Ensembl chr  X:116,911,329...116,917,644
JBrowse link
G Rorb RAR-related orphan receptor B involved_in IDA PMID:12958591 UniProt PMID:12958591 RGD:8553609 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Rxrb retinoid X receptor beta involved_in ISO (PMID:18922886) RGD PMID:18922886 NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:15051476 RGD:2312357 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Slc6a4 solute carrier family 6 member 4 IEP RGD PMID:17895527 RGD:4889514 NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEP RGD PMID:10022522 RGD:10448942 NCBI chr 1:95,856,038...95,876,434
Ensembl chr 1:95,856,036...95,876,392
JBrowse link
G Snw1 SNW domain containing 1 involved_in ISO (PMID:19934264) RGD PMID:19934264 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISO (PMID:12420222)
(PMID:19389355)
RGD PMID:12420222 PMID:19389355 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Stra8 stimulated by retinoic acid 8 involved_in ISO (PMID:19301398), (PMID:32032549) RGD PMID:19301398 PMID:32032549 NCBI chr 4:63,601,443...63,624,777
Ensembl chr 4:63,601,604...63,624,771
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:18816858)
UniProt
RGD
PMID:18816858 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbxt T-box transcription factor T IEP RGD PMID:20507357 RGD:8693647 NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (PMID:21385842) RGD PMID:21385842 NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO (PMID:21385842) RGD PMID:21385842 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186
JBrowse link
G Tesc tescalcin involved_in ISO (PMID:20060826) RGD PMID:20060826 NCBI chr12:38,521,832...38,555,665
Ensembl chr12:38,521,861...38,555,824
JBrowse link
G Tlr4 toll-like receptor 4 IEP RGD PMID:20438866 RGD:7777075 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Tnc tenascin C IEP RGD PMID:10502285 RGD:4889620 NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
JBrowse link
G Tnf tumor necrosis factor IEP RGD PMID:15602748 RGD:1582142 NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
JBrowse link
G Twf2 twinfilin actin-binding protein 2 involved_in ISO (PMID:17910947) RGD PMID:17910947 NCBI chr 8:106,845,253...106,858,298
Ensembl chr 8:106,845,253...106,858,298
JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:12239632), (PMID:12429992) RGD PMID:12239632 PMID:12429992 NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21385842)
Ensembl
RGD
PMID:21385842 GO_REF:0000107 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
G Yes1 YES proto-oncogene 1, Src family tyrosine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:21385842)
GO_REF:0000107
RGD
Ensembl
PMID:21385842 GO_REF:0000107 NCBI chr 9:113,200,256...113,275,942
Ensembl chr 9:113,200,256...113,299,837
JBrowse link
G Zfp105 zinc finger protein 105 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 8:122,567,229...122,578,696
Ensembl chr 8:122,567,214...122,578,692
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20069
    response to stimulus 10792
      response to chemical 5902
        response to lipid 1468
          response to retinoic acid 163
            cellular response to retinoic acid 83
              programmed cell death in response to retinoic acid 0
paths to the root