ONTOLOGY REPORT - ANNOTATIONS
Term: cellular response to retinoic acid
Accession: GO:0071300
browse the term
Definition: Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a retinoic acid stimulus.
Synonyms: exact_synonym: cellular response to vitamin A acid
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Abca1
ATP binding cassette subfamily A member 1
involved_in
ISO
(PMID:19752193)
RGD
PMID:19752193
NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
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Abl2
ABL proto-oncogene 2, non-receptor tyrosine kinase
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr13:68,673,702...68,770,846
Ensembl chr13:68,673,722...68,839,742
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Add1
adducin 1
IDA
RGD
PMID:20493242
RGD:5148002
NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182
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Afp
alpha-fetoprotein
IEP
RGD
PMID:7539613
RGD:126790586
NCBI chr14:17,573,412...17,591,476
Ensembl chr14:17,573,412...17,591,480
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Aldh1a2
aldehyde dehydrogenase 1 family, member A2
involved_in
ISO
(PMID:18816858)
RGD
PMID:18816858
NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
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Ankk1
ankyrin repeat and kinase domain containing 1
IEP
RGD
PMID:19853839
RGD:401959583
NCBI chr 8:49,779,862...49,788,024
Ensembl chr 8:49,779,862...49,788,024
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Aqp1
aquaporin 1
involved_in
ISO ISS
(PMID:12051745), (PMID:19424603) GO_REF:0000024
RGD UniProt
PMID:12051745 PMID:19424603
GO_REF:0000024
NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
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Atm
ATM serine/threonine kinase
involved_in
ISO
(PMID:20876357)
RGD
PMID:20876357
NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
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Atp1a3
ATPase Na+/K+ transporting subunit alpha 3
IEP
RGD
PMID:8944660
RGD:11576286
NCBI chr 1:80,572,790...80,601,936
Ensembl chr 1:80,572,796...80,601,918
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Brinp1
BMP/retinoic acid inducible neural specific 1
involved_in
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 (PMID:20025061)
Ensembl GO_Central RGD
PMID:20025061
GO_REF:0000033 GO_REF:0000107
NCBI chr 5:82,348,501...82,550,506
Ensembl chr 5:82,348,930...82,493,150
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Brinp2
BMP/retinoic acid inducible neural specific 2
involved_in
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 (PMID:20025061)
Ensembl GO_Central RGD
PMID:20025061
GO_REF:0000033 GO_REF:0000107
NCBI chr13:70,431,006...70,532,766
Ensembl chr13:70,431,010...70,531,810
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Brinp3
BMP/retinoic acid inducible neural specific 3
involved_in
ISS IBA ISO
GO_REF:0000024 GO_REF:0000033 (PMID:20025061)
UniProt GO_Central RGD
PMID:20025061
GO_REF:0000024 GO_REF:0000033
NCBI chr13:58,413,883...58,846,828
Ensembl chr13:58,413,883...58,846,770
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Ccl2
C-C motif chemokine ligand 2
IEP
RGD
PMID:11274229
RGD:8549584
NCBI chr10:67,005,424...67,007,222
Ensembl chr10:67,005,424...67,007,226
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Col1a1
collagen type I alpha 1 chain
IEP
RGD
PMID:1921334 PMID:21181362
RGD:2316228 , RGD:8552777
NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624
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Col1a2
collagen type I alpha 2 chain
IEP
RGD
PMID:15234273
RGD:5688233
NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867
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Col2a1
collagen type II alpha 1 chain
IEP
RGD
PMID:23810783
RGD:8661241
NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
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Creb1
cAMP responsive element binding protein 1
involved_in
ISO
(PMID:20876357)
RGD
PMID:20876357
NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816
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Cyp26a1
cytochrome P450, family 26, subfamily a, polypeptide 1
involved_in
ISO
(PMID:18816858)
RGD
PMID:18816858
NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
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Cyp26b1
cytochrome P450, family 26, subfamily b, polypeptide 1
involved_in
ISO
(PMID:18816858)
RGD
PMID:18816858
NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
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Drd2
dopamine receptor D2
IEP
RGD
PMID:19853839
RGD:401959583
NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
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Eln
elastin
IEP
RGD
PMID:8238530
RGD:9585669
NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928
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Ep300
E1A binding protein p300
IEP
RGD
PMID:20711222
RGD:7364732
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Epha3
Eph receptor A3
involved_in
IEA ISO
GO_REF:0000107 (PMID:17910947)
Ensembl RGD
PMID:17910947
GO_REF:0000107
NCBI chr11:1,138,485...1,474,102
Ensembl chr11:1,140,985...1,473,900
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Fgfr2
fibroblast growth factor receptor 2
IEP
RGD
PMID:15389522
RGD:12801431
NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
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Gjb3
gap junction protein, beta 3
IEP
RGD
PMID:8806447
RGD:12437074
NCBI chr 5:139,649,227...139,654,970
Ensembl chr 5:139,649,195...139,654,980
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Gsk3b
glycogen synthase kinase 3 beta
involved_in
ISO IEA
(PMID:28122350) GO_REF:0000107
RGD Ensembl
PMID:28122350
GO_REF:0000107
NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646
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Hand2
heart and neural crest derivatives expressed 2
IEP
RGD
PMID:16619265
RGD:5131544
NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
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Hdac2
histone deacetylase 2
IEP
RGD
PMID:19486889
RGD:9590233
NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
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Hoxa1
homeobox A1
acts_upstream_of_or_within
ISO
(PMID:23723417)
RGD
PMID:23723417
NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
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Hoxa2
homeobox A2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:23723417)
Ensembl RGD
PMID:23723417
GO_REF:0000107
NCBI chr 4:81,262,668...81,266,970
Ensembl chr 4:81,262,768...81,265,044
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Htra2
HtrA serine peptidase 2
involved_in
ISO
(PMID:17297443)
RGD
PMID:17297443
NCBI chr 4:115,556,914...115,560,202
Ensembl chr 4:115,556,916...115,560,095
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Ireb2
iron responsive element binding protein 2
IEP
RGD
PMID:22154532
RGD:12904026
NCBI chr 8:55,228,080...55,311,613
Ensembl chr 8:55,228,085...55,311,611
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Irf1
interferon regulatory factor 1
IEP
RGD
PMID:15721283
RGD:5128785
NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
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Klf4
KLF transcription factor 4
IEP
RGD
PMID:19486889
RGD:9590233
NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
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Krt13
keratin 13
IEP
RGD
PMID:7509732
RGD:2316552
NCBI chr10:85,051,887...85,056,099
Ensembl chr10:85,051,889...85,056,084
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Lep
leptin
IEP
RGD
PMID:19212007
RGD:5128705
NCBI chr 4:57,661,127...57,675,262
Ensembl chr 4:57,661,131...57,675,262
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Ltk
leukocyte receptor tyrosine kinase
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 3:106,734,675...106,741,552
Ensembl chr 3:106,734,676...106,743,369
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Lyn
LYN proto-oncogene, Src family tyrosine kinase
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 5:16,639,512...16,755,501
Ensembl chr 5:16,639,466...16,756,868
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Mef2c
myocyte enhancer factor 2C
IDA
RGD
PMID:17568621
RGD:5131615
NCBI chr 2:13,973,299...14,136,065
Ensembl chr 2:13,993,438...14,132,880
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Meiosin
meiosis initiator
involved_in
ISO
(PMID:32032549)
RGD
PMID:32032549
NCBI chr 1:78,744,504...78,768,104
Ensembl chr 1:78,744,983...78,764,977
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Muc1
mucin 1, cell surface associated
IEP
RGD
PMID:8967520
RGD:633461
NCBI chr 2:174,635,989...174,640,738
Ensembl chr 2:174,635,995...174,640,733
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Muc5ac
mucin 5AC, oligomeric mucus/gel-forming
IEP
RGD
PMID:8967520
RGD:633461
NCBI chr 1:196,864,336...196,896,475
Ensembl chr 1:196,864,336...196,896,475
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Myb
MYB proto-oncogene, transcription factor
IEP
RGD
PMID:8670250
RGD:11532681
NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
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Myc
MYC proto-oncogene, bHLH transcription factor
IEP
RGD
PMID:12873812
RGD:10059626
NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630
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Myog
myogenin
IEP
RGD
PMID:1323566
RGD:9686127
NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
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Ndufa13
NADH:ubiquinone oxidoreductase subunit A13
involved_in
ISO
(PMID:17297443)
RGD
PMID:17297443
NCBI chr16:19,526,633...19,533,567
Ensembl chr16:19,526,565...19,535,726
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Ntrk3
neurotrophic receptor tyrosine kinase 3
IEP
RGD
PMID:10027563
RGD:2325652
NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
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Orm1
orosomucoid 1
IEP
RGD
PMID:15157739
RGD:2316642
NCBI chr 5:76,766,637...76,776,149
Ensembl chr 5:76,772,941...76,776,154
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Osr1
odd-skipped related transcription factor 1
involved_in
ISO
(PMID:20171952)
RGD
PMID:20171952
NCBI chr 6:32,369,561...32,380,822
Ensembl chr 6:32,373,816...32,380,817
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Pax2
paired box 2
involved_in
ISS ISO
GO_REF:0000024 (PMID:20171952)
UniProt RGD
PMID:20171952
GO_REF:0000024
NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
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Pck1
phosphoenolpyruvate carboxykinase 1
IEP
RGD
PMID:21519922
RGD:10428394
NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
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Phb2
prohibitin 2
IEP
RGD
PMID:25031298
RGD:12903263
NCBI chr 4:157,517,662...157,522,268
Ensembl chr 4:157,517,577...157,522,272
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Phc1
polyhomeotic homolog 1
acts_upstream_of_or_within
ISO
(PMID:8070621)
RGD
PMID:8070621
NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
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Pparg
peroxisome proliferator-activated receptor gamma
IEP
RGD
PMID:10797535
RGD:8553016
NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
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Ptk2b
protein tyrosine kinase 2 beta
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr15:40,360,722...40,481,235
Ensembl chr15:40,360,723...40,481,282
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Ptk6
protein tyrosine kinase 6
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 3:168,307,073...168,315,664
Ensembl chr 3:168,307,073...168,315,664
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Ptk7
protein tyrosine kinase 7
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 9:14,352,155...14,418,473
Ensembl chr 9:14,351,202...14,418,494
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Rara
retinoic acid receptor, alpha
involved_in
ISO
(PMID:28122350)
RGD
PMID:28122350
NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
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Rarg
retinoic acid receptor, gamma
IEP
RGD
PMID:11072095
RGD:1300463
NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
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Rbfox2
RNA binding fox-1 homolog 2
IEP
RGD
PMID:24151077
RGD:329848997
NCBI chr 7:108,810,627...109,054,420
Ensembl chr 7:108,810,628...109,054,691
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Ret
ret proto-oncogene
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
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Rhox13
Rhox homeobox family member 13
acts_upstream_of_or_within
ISO
(PMID:22190708)
RGD
PMID:22190708
NCBI chr X:116,911,226...116,917,758
Ensembl chr X:116,911,329...116,917,644
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Rorb
RAR-related orphan receptor B
involved_in
IDA
PMID:12958591
UniProt
PMID:12958591
RGD:8553609
NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
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Rxrb
retinoid X receptor beta
involved_in
ISO
(PMID:18922886)
RGD
PMID:18922886
NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773
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Serpinf1
serpin family F member 1
IEP
RGD
PMID:15051476
RGD:2312357
NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
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Slc6a4
solute carrier family 6 member 4
IEP
RGD
PMID:17895527
RGD:4889514
NCBI chr10:61,824,208...61,858,924
Ensembl chr10:61,826,123...61,858,384
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Snrnp70
small nuclear ribonucleoprotein U1 subunit 70
IEP
RGD
PMID:10022522
RGD:10448942
NCBI chr 1:95,856,038...95,876,434
Ensembl chr 1:95,856,036...95,876,392
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Snw1
SNW domain containing 1
involved_in
ISO
(PMID:19934264)
RGD
PMID:19934264
NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
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Sox9
SRY-box transcription factor 9
involved_in acts_upstream_of_or_within
ISO
(PMID:12420222) (PMID:19389355)
RGD
PMID:12420222 PMID:19389355
NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
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Stra8
stimulated by retinoic acid 8
involved_in
ISO
(PMID:19301398), (PMID:32032549)
RGD
PMID:19301398 PMID:32032549
NCBI chr 4:63,601,443...63,624,777
Ensembl chr 4:63,601,604...63,624,771
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Tbx1
T-box transcription factor 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:18816858)
UniProt RGD
PMID:18816858
GO_REF:0000024
NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
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Tbxt
T-box transcription factor T
IEP
RGD
PMID:20507357
RGD:8693647
NCBI chr 1:52,298,104...52,309,813
Ensembl chr 1:52,298,099...52,305,864
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Tead1
TEA domain transcription factor 1
acts_upstream_of_or_within
ISO
(PMID:21385842)
RGD
PMID:21385842
NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369
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Tead2
TEA domain transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:21385842)
RGD
PMID:21385842
NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186
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Tesc
tescalcin
involved_in
ISO
(PMID:20060826)
RGD
PMID:20060826
NCBI chr12:38,521,832...38,555,665
Ensembl chr12:38,521,861...38,555,824
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Tlr4
toll-like receptor 4
IEP
RGD
PMID:20438866
RGD:7777075
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
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Tnc
tenascin C
IEP
RGD
PMID:10502285
RGD:4889620
NCBI chr 5:77,375,851...77,460,712
Ensembl chr 5:77,375,851...77,460,624
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Tnf
tumor necrosis factor
IEP
RGD
PMID:15602748
RGD:1582142
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Twf2
twinfilin actin-binding protein 2
involved_in
ISO
(PMID:17910947)
RGD
PMID:17910947
NCBI chr 8:106,845,253...106,858,298
Ensembl chr 8:106,845,253...106,858,298
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Wnt7b
Wnt family member 7B
involved_in
ISO
(PMID:12239632), (PMID:12429992)
RGD
PMID:12239632 PMID:12429992
NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581
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Yap1
Yes1 associated transcriptional regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:21385842)
Ensembl RGD
PMID:21385842
GO_REF:0000107
NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010
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Yes1
YES proto-oncogene 1, Src family tyrosine kinase
acts_upstream_of_or_within involved_in
ISO IEA
(PMID:21385842) GO_REF:0000107
RGD Ensembl
PMID:21385842
GO_REF:0000107
NCBI chr 9:113,200,256...113,275,942
Ensembl chr 9:113,200,256...113,299,837
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Zfp105
zinc finger protein 105
involved_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 8:122,567,229...122,578,696
Ensembl chr 8:122,567,214...122,578,692
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all