Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of collateral sprouting
go back to main search page
Accession:GO:0048670 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of collateral sprouting.


show annotations for term's descendants           Sort by:
regulation of collateral sprouting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BDNF brain derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:24573299) MGI PMID:24573299 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239 		JBrowse link
G FSTL4 follistatin like 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24573299) Ensembl
MGI		 PMID:24573299 GO_REF:0000107 NCBI chr 5:128,606,171...129,016,734
Ensembl chr 5:134,766,944...135,163,711 		JBrowse link
negative regulation of collateral sprouting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL11A BCL11 transcription factor A involved_in ISO (PMID:19616629) BHF-UCL PMID:19616629 NCBI chr2A:60,552,908...60,655,437
Ensembl chr2A:61,695,613...61,795,800 		JBrowse link
G EPHA7 EPH receptor A7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:91,143,240...91,322,040
Ensembl chr 6:94,392,353...94,566,716 		JBrowse link
G FGF13 fibroblast growth factor 13 involved_in ISO (PMID:22726441) UniProt PMID:22726441 NCBI chr  X:127,764,648...128,353,928
Ensembl chr  X:138,023,016...138,103,217 		JBrowse link
G FSTL4 follistatin like 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24573299) Ensembl
MGI		 PMID:24573299 GO_REF:0000107 NCBI chr 5:128,606,171...129,016,734
Ensembl chr 5:134,766,944...135,163,711 		JBrowse link
G IFRD1 interferon related developmental regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18052984) Ensembl
MGI		 PMID:18052984 GO_REF:0000107 NCBI chr 7:104,412,763...104,438,490
Ensembl chr 7:117,115,187...117,141,887 		JBrowse link
G PTPRS protein tyrosine phosphatase receptor type S involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:4,227,038...4,361,958
Ensembl chr19:5,168,599...5,247,778 		JBrowse link
G RGMA repulsive guidance molecule BMP co-receptor a ISO RGD PMID:23744345 RGD:9850124 NCBI chr15:71,728,669...71,774,447
Ensembl chr15:90,922,199...90,956,179 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17389358) MGI
TreeGrafter		 PMID:17389358 GO_REF:0000118 NCBI chr12:129,549,399...129,579,087 JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17389358) MGI
TreeGrafter		 PMID:17389358 GO_REF:0000118 NCBI chr17:31,262,168...31,362,251
Ensembl chr17:36,409,312...36,507,786 		JBrowse link
negative regulation of collateral sprouting in absence of injury term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPART spartin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22619377) Ensembl
MGI		 PMID:22619377 GO_REF:0000107 NCBI chr13:17,514,720...17,582,011
Ensembl chr13:35,945,938...35,989,774 		JBrowse link
negative regulation of collateral sprouting of intact axon in response to injury term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPP1 secreted phosphoprotein 1 ISO RGD PMID:15625076 RGD:1581125 NCBI chr 4:80,263,711...80,271,466
Ensembl chr 4:90,988,200...90,995,935 		JBrowse link
positive regulation of collateral sprouting term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL11A BCL11 transcription factor A involved_in ISO (PMID:19616629) BHF-UCL PMID:19616629 NCBI chr2A:60,552,908...60,655,437
Ensembl chr2A:61,695,613...61,795,800 		JBrowse link
G BDNF brain derived neurotrophic factor acts_upstream_of_or_within
involved_in		 ISO (PMID:24573299)
(PMID:19036963)		 MGI
BHF-UCL		 PMID:19036963 PMID:24573299 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239 		JBrowse link
G CRABP2 cellular retinoic acid binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18052984) Ensembl
MGI		 PMID:18052984 GO_REF:0000107 NCBI chr 1:132,043,097...132,049,366
Ensembl chr 1:135,864,807...135,870,145 		JBrowse link
G DCX doublecortin ISO RGD PMID:19726658 RGD:12904759 NCBI chr  X:100,411,871...100,529,833
Ensembl chr  X:110,875,032...110,988,582 		JBrowse link
G EFNA5 ephrin A5 involved_in ISO (PMID:19036963) BHF-UCL PMID:19036963 NCBI chr 5:102,732,268...103,026,746
Ensembl chr 5:108,548,927...108,598,942 		JBrowse link
G IST1 IST1 factor associated with ESCRT-III involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22619377) Ensembl
MGI		 PMID:22619377 GO_REF:0000107 NCBI chr16:53,082,530...53,115,965
Ensembl chr16:71,733,302...71,765,969 		JBrowse link
G LPAR3 lysophosphatidic acid receptor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22465231) Ensembl
MGI		 PMID:22465231 GO_REF:0000107 NCBI chr 1:117,359,661...117,441,297
Ensembl chr 1:86,222,008...86,274,228 		JBrowse link
G NGF nerve growth factor acts_upstream_of_or_within ISO (PMID:18052984) MGI PMID:18052984 NCBI chr 1:87,223,597...87,276,759 JBrowse link
G RND2 Rho family GTPase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22465231) Ensembl
MGI		 PMID:22465231 GO_REF:0000107 NCBI chr17:14,276,880...14,298,023
Ensembl chr17:14,521,510...14,528,209 		JBrowse link
G SEMA4D semaphorin 4D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:60,451,420...60,588,519
Ensembl chr 9:88,497,528...88,560,811 		JBrowse link
positive regulation of collateral sprouting in absence of injury term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18716223) Ensembl
MGI		 PMID:18716223 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
positive regulation of collateral sprouting of injured axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP1 LDL receptor related protein 1 ISO RGD PMID:23867460 RGD:13800520 NCBI chr12:31,713,938...31,799,287
Ensembl chr12:31,966,149...32,051,979 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16644
    regulation of biological process 11252
      regulation of growth 659
        regulation of developmental growth 387
          regulation of collateral sprouting 23
            negative regulation of collateral sprouting + 11
            positive regulation of collateral sprouting + 13
            regulation of collateral sprouting in absence of injury + 3
            regulation of collateral sprouting of injured axon + 1
            regulation of collateral sprouting of intact axon in response to injury + 1
Path 2
Term Annotations click to browse term
  biological_process 16644
    developmental process 6643
      anatomical structure development 6232
        multicellular organism development 5005
          system development 4349
            nervous system development 2727
              neurogenesis 2021
                generation of neurons 1745
                  neuron differentiation 1661
                    neuron development 1366
                      neuron projection development 1198
                        axon development 572
                          axonogenesis 500
                            collateral sprouting 35
                              regulation of collateral sprouting 23
                                negative regulation of collateral sprouting + 11
                                positive regulation of collateral sprouting + 13
                                regulation of collateral sprouting in absence of injury + 3
                                regulation of collateral sprouting of injured axon + 1
                                regulation of collateral sprouting of intact axon in response to injury + 1
paths to the root