Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:nuclear DNA replication
go back to main search page
Accession:GO:0033260 term browser browse the term
Definition:The DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle.
Synonyms:exact_synonym: DNA replication involved in S phase;   nuclear cell cycle DNA replication
 related_synonym: DNA replication during S phase
 only_in_taxon: NCBITaxon:2759 ! Eukaryota


show annotations for term's descendants           Sort by:
nuclear DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATAD5 ATPase family AAA domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:40,869,778...40,917,976
Ensembl chr 9:40,870,924...40,915,629 		JBrowse link
G ZNF830 zinc finger protein 830 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21191184) Ensembl
MGI		 PMID:21191184 GO_REF:0000107 NCBI chr 9:38,382,508...38,384,060
Ensembl chr 9:38,382,900...38,384,015 		JBrowse link
DNA replication preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:22,796,558...22,805,961
Ensembl chr35:22,798,386...22,805,959 		JBrowse link
DNA synthesis involved in mitotic DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 ISO RGD PMID:15696186 RGD:2301349 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438 		JBrowse link
G TK1 thymidine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:2,959,450...2,970,908
Ensembl chr 9:2,959,488...2,971,064 		JBrowse link
mitotic DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:20,227,808...20,537,893
Ensembl chr  X:20,227,886...20,537,902 		JBrowse link
mitotic DNA replication termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RTF2 replication termination factor 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr24:41,665,259...41,706,348
Ensembl chr24:41,665,294...41,706,348 		JBrowse link
mitotic DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RECQL5 RecQ like helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436 		JBrowse link
mitotic recombination-dependent replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA2 BRCA2 DNA repair associated involved_in ISO (PMID:21076401) BHF-UCL PMID:21076401 NCBI chr25:7,734,450...7,797,851
Ensembl chr25:7,734,453...7,797,815 		JBrowse link
G RAD51 RAD51 recombinase involved_in IEA InterPro GO_REF:0000002 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606 		JBrowse link
mitotic telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNA2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:19,626,001...19,683,819
Ensembl chr 4:19,626,977...19,684,660 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992 		JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 involved_in ISO (PMID:24115439) BHF-UCL PMID:24115439 NCBI chr24:47,219,977...47,248,791 JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:2161540) Ensembl
MGI		 PMID:2161540 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980 		JBrowse link
G CDC7 cell division cycle 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:57,336,165...57,362,478
Ensembl chr 6:57,337,407...57,362,757 		JBrowse link
G DBF4B DBF4B-CDC7 kinase regulatory subunit involved_in ISO (PMID:15668232) UniProt PMID:15668232 NCBI chr 9:18,734,678...18,768,128 JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,100,536...8,229,868
Ensembl chr30:8,101,934...8,202,025 		JBrowse link
G WIZ WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chr20:46,746,991...46,773,065
Ensembl chr20:46,747,062...46,817,240 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15980864) Ensembl
MGI		 PMID:15980864 GO_REF:0000107 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789 		JBrowse link
G CDT1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within ISO (PMID:11850834) MGI PMID:11850834 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
G DACH1 dachshund family transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:25,690,700...25,934,449
Ensembl chr22:25,726,597...25,934,550 		JBrowse link
G ILKAP ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chr25:48,666,850...48,689,405
Ensembl chr25:48,666,849...48,689,381 		JBrowse link
G NUGGC nuclear GTPase, germinal center associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:29,507,198...29,561,565
Ensembl chr25:29,520,921...29,561,349 		JBrowse link
telomere maintenance via semi-conservative replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPF1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:44,234,411...44,271,129
Ensembl chr20:44,236,264...44,270,916 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17101
    cellular process 16595
      cell cycle process 1196
        cell cycle DNA replication 31
          nuclear DNA replication 26
            DNA replication preinitiation complex assembly + 2
            DNA strand elongation involved in nuclear cell cycle DNA replication + 0
            mitotic DNA replication + 9
            negative regulation of nuclear cell cycle DNA replication + 0
            nuclear DNA replication DNA duplex unwinding + 0
            nuclear DNA replication DNA ligation + 0
            nuclear DNA replication termination + 1
            nuclear cell cycle DNA replication initiation + 1
            positive regulation of nuclear cell cycle DNA replication + 6
            pre-replicative complex assembly involved in nuclear cell cycle DNA replication + 0
            premeiotic DNA replication + 0
            regulation of nuclear cell cycle DNA replication + 12
            telomere maintenance via semi-conservative replication + 4
Path 2
Term Annotations click to browse term
  biological_process 17101
    cellular process 16595
      metabolic process 10708
        primary metabolic process 9413
          nucleobase-containing compound metabolic process 5142
            nucleic acid metabolic process 4583
              DNA metabolic process 888
                DNA replication 256
                  DNA-templated DNA replication 143
                    cell cycle DNA replication 31
                      nuclear DNA replication 26
                        DNA replication preinitiation complex assembly + 2
                        DNA strand elongation involved in nuclear cell cycle DNA replication + 0
                        mitotic DNA replication + 9
                        negative regulation of nuclear cell cycle DNA replication + 0
                        nuclear DNA replication DNA duplex unwinding + 0
                        nuclear DNA replication DNA ligation + 0
                        nuclear DNA replication termination + 1
                        nuclear cell cycle DNA replication initiation + 1
                        positive regulation of nuclear cell cycle DNA replication + 6
                        pre-replicative complex assembly involved in nuclear cell cycle DNA replication + 0
                        premeiotic DNA replication + 0
                        regulation of nuclear cell cycle DNA replication + 12
                        telomere maintenance via semi-conservative replication + 4
paths to the root