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ONTOLOGY REPORT - ANNOTATIONS

Term:blastoderm segmentation
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Accession:GO:0007350 term browser browse the term
Definition:The hierarchical steps resulting in the progressive subdivision of the anterior/posterior axis of the embryo.


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anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO MGI:1934206 (PMID:9790191) RGD PMID:9790191 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (PMID:15870281) RGD PMID:15870281 NCBI chr 7:52,711,255...52,792,738
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO
IEA		 (PMID:9054360)
GO_REF:0000107		 RGD
Ensembl		 PMID:9054360 GO_REF:0000107 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28839193) RGD PMID:28839193 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:9207801)		 UniProt
RGD		 PMID:9207801 GO_REF:0000024 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (PMID:14668413) RGD PMID:14668413 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO		 GO_REF:0000107
(PMID:9054360)		 Ensembl
RGD		 PMID:9054360 GO_REF:0000107 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (PMID:21397848) RGD PMID:21397848 NCBI chr10:44,578,536...44,581,187
Ensembl chr10:44,577,675...44,581,077 		JBrowse link
G Stk31 serine threonine kinase 31 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:78,370,691...78,467,599
Ensembl chr 4:78,370,649...78,466,240 		JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
ISO
IBA
ISS		 GO_REF:0000107
(PMID:21383078)
GO_REF:0000033
GO_REF:0000024		 Ensembl
RGD
GO_Central
UniProt		 PMID:21383078 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319 		JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592 		JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:8395349)		 UniProt
RGD		 PMID:8395349 GO_REF:0000024 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (PMID:16316641) RGD PMID:16316641 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451 		JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (PMID:16319111) RGD PMID:16319111 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO MGI:2670663 (PMID:16319111) RGD PMID:16319111 NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
(PMID:15337776)		 Ensembl
RGD		 PMID:15337776 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19386662)		 Ensembl
RGD		 PMID:19386662 GO_REF:0000107 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:19386662) RGD PMID:19386662 NCBI chr 8:108,357,629...108,386,569
Ensembl chr 8:108,357,629...108,387,083 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (PMID:16831833) RGD PMID:16831833 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2181754|MGI:97359 (PMID:10809672)		 Ensembl
RGD		 PMID:10809672 GO_REF:0000107 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20228
    multicellular organismal process 8911
      pattern specification process 500
        embryonic pattern specification 83
          blastoderm segmentation 25
            head segmentation + 0
            periodic partitioning + 0
            tripartite regional subdivision + 19
            trunk segmentation + 6
Path 2
Term Annotations click to browse term
  biological_process 20228
    developmental process 7076
      anatomical structure development 6578
        multicellular organism development 5302
          pattern specification process 500
            regionalization 454
              segmentation 113
                blastoderm segmentation 25
                  head segmentation + 0
                  periodic partitioning + 0
                  tripartite regional subdivision + 19
                  trunk segmentation + 6
paths to the root