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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:irritable bowel syndrome
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Accession:DOID:9778 term browser browse the term
Definition:An intestinal disease that is characterized by chronic abdominal pain, discomfort, bloating, and alteration of bowel habits in the absence of any detectable organic cause. (DO)
Synonyms:exact_synonym: IBD;   Irritable Colon;   Mucous Colitides;   irritable bowel syndromes;   mucous colitis
 related_synonym: psychogenic IBS
 primary_id: MESH:D043183
 xref: ICD10CM:K58;   ICD10CM:K58.9;   ICD9CM:564.1;   NCI:C82343
For additional species annotation, visit the Alliance of Genome Resources.



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irritable bowel syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO protein:increased expression:colonic mucosa,intestinal intestine: RGD PMID:21997550 RGD:8655978 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Cbs cystathionine beta synthase severity ISO RGD PMID:27472293 RGD:40903054 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764
JBrowse link
G Cldn1 claudin 1 ISO protein:decreased expression:intestine: RGD PMID:25277410 RGD:11344877 NCBI chr11:74,421,569...74,436,728
Ensembl chr11:74,421,569...74,436,724
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 IEP protein:increased expression:distal colon (rat) RGD PMID:20096320 RGD:5130948 NCBI chr10:89,040,203...89,083,481
Ensembl chr10:89,040,203...89,083,481
JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 IEP associated with Anxiety Disorders; protein:decreased expression:distal colon (rat) RGD PMID:20096320 RGD:5130948 NCBI chr 4:84,222,897...84,265,924
Ensembl chr 4:84,224,002...84,265,904
JBrowse link
G Efnb2 ephrin B2 IEP associated with trichuriasis;protein:increased expression:colonic muscularis: RGD PMID:31601124 RGD:127229906 NCBI chr16:80,783,389...80,827,420
Ensembl chr16:80,783,417...80,824,391
JBrowse link
G Ephb2 Eph receptor B2 ameliorates IEP
IMP
associated with trichuriasis;protein:increased expression:colonic muscularis: RGD PMID:31601124 PMID:31601124 RGD:127229906, RGD:127229906 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Htr3a 5-hydroxytryptamine receptor 3A severity ISO DNA:SNP:promoter:c.-42C>T(human) RGD PMID:21420406 RGD:6480659 NCBI chr 8:49,242,018...49,254,475
Ensembl chr 8:49,242,020...49,254,389
JBrowse link
G Htr7 5-hydroxytryptamine receptor 7 IEP protein:increased expression:brain, intestine RGD PMID:18167178 RGD:6480673 NCBI chr 1:233,636,442...233,761,063
Ensembl chr 1:233,636,452...233,760,626
JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma treatment IDA RGD PMID:22428658 RGD:12791275 NCBI chr  X:152,216,485...152,241,476
Ensembl chr  X:152,216,596...152,239,499
JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12404228 NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313
JBrowse link
G Il33 interleukin 33 severity ISO RGD PMID:23172891 RGD:40400694 NCBI chr 1:227,701,964...227,736,374
Ensembl chr 1:227,721,435...227,736,373
JBrowse link
G Mir21 microRNA 21 ISO RNA:increased expression:colon RGD PMID:23826144 RGD:41404691 NCBI chr10:71,405,257...71,405,348
Ensembl chr10:71,405,257...71,405,348
JBrowse link
G Mlxipl MLX interacting protein-like ISS MouseDO NCBI chr12:21,542,964...21,577,120
Ensembl chr12:21,543,576...21,577,112
JBrowse link
G Nos3 nitric oxide synthase 3 IDA RGD PMID:23691109 RGD:7771566 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
JBrowse link
G Pdia3 protein disulfide isomerase family A, member 3 severity IEP
IMP
protein:increased expression:colonic mucosa: RGD PMID:20367971 PMID:26221224 RGD:9999158, RGD:13838729 NCBI chr 3:108,388,189...108,412,013
Ensembl chr 3:108,388,245...108,413,236
JBrowse link
G Rnf43 ring finger protein 43 exacerbates ISO associated with Colitis-Associated Neoplasms;DNA:mutations:multiple: (human) RGD PMID:29416670 RGD:151361225 NCBI chr10:72,461,508...72,535,977
Ensembl chr10:72,464,348...72,536,977
JBrowse link
G Rpsa ribosomal protein SA IEP RGD PMID:20461717 RGD:5686874 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247
JBrowse link
G Tpsab1 tryptase alpha/beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27749843 NCBI chr10:14,360,396...14,362,811
Ensembl chr10:14,360,396...14,362,811
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18030
    syndrome 9456
      irritable bowel syndrome 20
Path 2
Term Annotations click to browse term
  disease 18030
    disease of anatomical entity 17410
      gastrointestinal system disease 6494
        Gastrointestinal Diseases 4623
          intestinal disease 2871
            colonic disease 2141
              functional colonic disease 20
                irritable bowel syndrome 20
paths to the root