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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:lower urinary tract calculus
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Accession:DOID:9590 term browser browse the term
Definition:A urinary system disease that is located_in the lower urinary tract and is characterized by the formation of a stone. (DO)
Synonyms:primary_id: RDO:9004849
 xref: ICD10CM:N21;   ICD10CM:N21.9;   ICD9CM:594
For additional species annotation, visit the Alliance of Genome Resources.



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bladder calculus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:22232670 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
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prostate calculus term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ltf lactotransferrin ISO RGD PMID:19202053 RGD:7243107 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18145
    Pathological Conditions, Signs and Symptoms 11282
      Anatomical Pathological Conditions 2206
        Calculi 38
          Urinary Calculi 31
            lower urinary tract calculus 2
              bladder calculus + 1
              prostate calculus 1
              urethral calculus 0
Path 2
Term Annotations click to browse term
  disease 18145
    disease of anatomical entity 17519
      Urogenital Diseases 4704
        urinary system disease 2389
          urolithiasis 64
            Urinary Calculi 31
              lower urinary tract calculus 2
                bladder calculus + 1
                prostate calculus 1
                urethral calculus 0
paths to the root