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ONTOLOGY REPORT - ANNOTATIONS


Term:encephalitis
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Accession:DOID:9588 term browser browse the term
Definition:Inflammation of the BRAIN due to infection, autoimmune processes, toxins, and other conditions. Viral infections (see ENCEPHALITIS, VIRAL) are a relatively frequent cause of this condition.
Synonyms:exact_synonym: Brain Inflammation;   Brain Inflammations;   Rasmussen Encephalitis;   Rasmussen Syndrome;   Rasmussen's Syndrome
 primary_id: MESH:D004660;   RDO:0000312
 xref: NCI:C26760
For additional species annotation, visit the Alliance of Genome Resources.


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encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABCB1 ATP binding cassette subfamily B member 1 JBrowse link 7 87,503,017 87,713,323 RGD:8657083
G ABCD1 ATP binding cassette subfamily D member 1 JBrowse link X 153,724,851 153,744,755 RGD:8554872
G ANXA1 annexin A1 JBrowse link 9 73,151,865 73,170,393 RGD:7421580
G FCER2 Fc fragment of IgE receptor II JBrowse link 19 7,688,757 7,702,755 RGD:11554173
G IL1B interleukin 1 beta JBrowse link 2 112,829,751 112,836,843 RGD:5147676
G IL1RN interleukin 1 receptor antagonist JBrowse link 2 113,099,365 113,134,016 RGD:8551849
G MBP myelin basic protein JBrowse link 18 76,978,833 77,133,708 RGD:7327204
G NFKBIA NFKB inhibitor alpha JBrowse link 14 35,401,513 35,404,749 RGD:5147676
G NGB neuroglobin JBrowse link 14 77,265,491 77,271,312 RGD:9743961
G RELA RELA proto-oncogene, NF-kB subunit JBrowse link 11 65,653,596 65,662,972 RGD:5147676
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 1 25,222,276 25,232,502 RGD:10059414
G TNF tumor necrosis factor JBrowse link 6 31,575,565 31,578,336 RGD:5147676
Herpes Simplex Encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G APOE apolipoprotein E JBrowse link 19 44,905,796 44,909,395 RGD:7771554
G AQP4 aquaporin 4 JBrowse link 18 26,852,038 26,865,803 RGD:8698664
G CALCA calcitonin related polypeptide alpha JBrowse link 11 14,966,668 14,972,361 RGD:7240516
G CALCR calcitonin receptor JBrowse link 7 93,424,486 93,574,730 RGD:7240516
G CCR2 C-C motif chemokine receptor 2 JBrowse link 3 46,353,744 46,360,940 RGD:8661752
G CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) JBrowse link 3 46,370,142 46,376,206 RGD:8551839
G CX3CR1 C-X3-C motif chemokine receptor 1 JBrowse link 3 39,263,494 39,281,735 RGD:8661752
G GDNF glial cell derived neurotrophic factor JBrowse link 5 37,812,677 37,840,044 RGD:8657070
G IRF3 interferon regulatory factor 3 JBrowse link 19 49,659,569 49,665,875 RGD:11554173
G LTA lymphotoxin alpha JBrowse link 6 31,560,550 31,574,324 RGD:8548806
G MMP2 matrix metallopeptidase 2 JBrowse link 16 55,478,830 55,506,691 RGD:8547868
G MMP9 matrix metallopeptidase 9 JBrowse link 20 46,008,908 46,016,561 RGD:8547867
RGD:8547868
G STAT4 signal transducer and activator of transcription 4 JBrowse link 2 191,029,576 191,172,684 RGD:8661706
G TICAM1 toll like receptor adaptor molecule 1 JBrowse link 19 4,815,924 4,831,742 RGD:11554173
G TLR2 toll like receptor 2 JBrowse link 4 153,684,080 153,710,643 RGD:8553026
RGD:5130178
G TLR3 toll like receptor 3 JBrowse link 4 186,069,156 186,088,073 RGD:8554872
RGD:11554173
RGD:7240710
G TLR4 toll like receptor 4 JBrowse link 9 117,704,403 117,724,735 RGD:5130178
G TLR9 toll like receptor 9 JBrowse link 3 52,221,080 52,226,163 RGD:5130178
G TRAF3 TNF receptor associated factor 3 JBrowse link 14 102,777,449 102,911,500 RGD:11554173
G UNC93B1 unc-93 homolog B1, TLR signaling regulator JBrowse link 11 67,991,100 68,004,097 RGD:11554173
Herpes Simplex Encephalitis 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TLR3 toll like receptor 3 JBrowse link 4 186,069,156 186,088,073 RGD:8554872
G UNC93B1 unc-93 homolog B1, TLR signaling regulator JBrowse link 11 67,991,100 68,004,097 RGD:8554872
RGD:7240710
Herpes Simplex Encephalitis 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMN amnion associated transmembrane protein JBrowse link 14 102,922,430 102,933,597 RGD:8554872
G TRAF3 TNF receptor associated factor 3 JBrowse link 14 102,777,449 102,911,500 RGD:8554872
RGD:7240710
Herpes Simplex Encephalitis 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TICAM1 toll like receptor adaptor molecule 1 JBrowse link 19 4,815,924 4,831,742 RGD:8554872
RGD:7240710
Herpes Simplex Encephalitis 7 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IRF3 interferon regulatory factor 3 JBrowse link 19 49,659,569 49,665,875 RGD:7240710
RGD:8554872
HIV Encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G APP amyloid beta precursor protein JBrowse link 21 25,880,550 26,171,128 RGD:13782045
G BACE1 beta-secretase 1 JBrowse link 11 117,285,207 117,316,256 RGD:13782045
G CDK5 cyclin dependent kinase 5 JBrowse link 7 151,053,815 151,057,897 RGD:13506927
G MFN1 mitofusin 1 JBrowse link 3 179,347,709 179,394,936 RGD:12910851
Japanese encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 JBrowse link 1 20,482,391 20,486,210 RGD:18337278
Lupus Vasculitis, Central Nervous System term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FCGR3A Fc fragment of IgG receptor IIIa JBrowse link 1 161,541,759 161,550,737 RGD:11554173
G FCGR3B Fc fragment of IgG receptor IIIb JBrowse link 1 161,623,196 161,631,963 RGD:11554173
G ITGAM integrin subunit alpha M JBrowse link 16 31,259,975 31,332,877 RGD:11554173
G SELP selectin P JBrowse link 1 169,588,849 169,630,125 RGD:6478687
meningoencephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AIF1 allograft inflammatory factor 1 JBrowse link 6 31,615,212 31,617,015 RGD:2313041
G CNP 2',3'-cyclic nucleotide 3' phosphodiesterase JBrowse link 17 41,966,795 41,977,740 RGD:6483338
G PLAT plasminogen activator, tissue type JBrowse link 8 42,174,718 42,207,565 RGD:11554173
Nasu-Hakola disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TREM2 triggering receptor expressed on myeloid cells 2 JBrowse link 6 41,158,508 41,163,116 RGD:8554872
G TYROBP transmembrane immune signaling adaptor TYROBP JBrowse link 19 35,904,403 35,908,295 RGD:8554872
RGD:11554173
RGD:7240710
tick-borne encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CD40 CD40 molecule JBrowse link 20 46,118,242 46,129,858 RGD:11352252
G CD40LG CD40 ligand JBrowse link X 136,648,158 136,660,390 RGD:11352252
viral encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADRB2 adrenoceptor beta 2 JBrowse link 5 148,826,593 148,828,634 RGD:11554173
G BECN1 beclin 1 JBrowse link 17 42,810,132 42,824,316 RGD:6483316
G CCR1 C-C motif chemokine receptor 1 JBrowse link 3 46,201,711 46,208,313 RGD:5688146
G CD274 CD274 molecule JBrowse link 9 5,450,503 5,470,567 RGD:6893671
G E2F1 E2F transcription factor 1 JBrowse link 20 33,675,477 33,686,385 RGD:10401094
G MMP9 matrix metallopeptidase 9 JBrowse link 20 46,008,908 46,016,561 RGD:5130920
G OPRM1 opioid receptor mu 1 JBrowse link 6 154,010,496 154,246,867 RGD:11554173
West Nile fever term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) JBrowse link 3 46,370,142 46,376,206 RGD:7240710
RGD:8554872
RGD:11554173
G CCR5AS CCR5 antisense RNA JBrowse link 3 46,364,660 46,407,059 RGD:8554872
G S100B S100 calcium binding protein B JBrowse link 21 46,598,604 46,605,243 RGD:5508797

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16528
    disease of anatomical entity 15507
      Immune & Inflammatory Diseases 2995
        Inflammation 1918
          encephalitis 57
            Anti-N-Methyl-D-Aspartate Receptor Encephalitis 0
            Bilateral Atresia of External Auditory Canal with Congenital Vertical Talus 0
            Cerebral Ventriculitis 0
            Hashimoto's Encephalitis 0
            Infectious Encephalitis + 38
            Limbic Encephalitis + 0
            Rasmussen Johnsen Thomsen Syndrome 0
            Rasmussen Subacute Encephalitis 0
            acute hemorrhagic encephalitis 0
            acute necrotizing encephalitis 0
            meningoencephalitis + 7
            post-vaccinal encephalitis 0
            syphilitic encephalitis 0
            von Economo's disease 0
Path 2
Term Annotations click to browse term
  disease 16528
    disease of anatomical entity 15507
      nervous system disease 11780
        central nervous system disease 9925
          brain disease 9206
            encephalitis 57
              Anti-N-Methyl-D-Aspartate Receptor Encephalitis 0
              Bilateral Atresia of External Auditory Canal with Congenital Vertical Talus 0
              Cerebral Ventriculitis 0
              Hashimoto's Encephalitis 0
              Infectious Encephalitis + 38
              Limbic Encephalitis + 0
              Rasmussen Johnsen Thomsen Syndrome 0
              Rasmussen Subacute Encephalitis 0
              acute hemorrhagic encephalitis 0
              acute necrotizing encephalitis 0
              meningoencephalitis + 7
              post-vaccinal encephalitis 0
              syphilitic encephalitis 0
              von Economo's disease 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.