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ONTOLOGY REPORT - ANNOTATIONS


Term:encephalitis
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Accession:DOID:9588 term browser browse the term
Definition:Inflammation of the BRAIN due to infection, autoimmune processes, toxins, and other conditions. Viral infections (see ENCEPHALITIS, VIRAL) are a relatively frequent cause of this condition.
Synonyms:exact_synonym: Brain Inflammation;   Brain Inflammations;   Rasmussen Encephalitis;   Rasmussen Syndrome;   Rasmussen's Syndrome
 primary_id: MESH:D004660;   RDO:0000312
 xref: NCI:C26760
For additional species annotation, visit the Alliance of Genome Resources.


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encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1 ATP binding cassette subfamily B member 1 JBrowse link NW_004955432 4,911,774 5,085,349 RGD:9068941
G Abcd1 ATP binding cassette subfamily D member 1 JBrowse link NW_004955580 459,715 475,363 RGD:9068941
G Anxa1 annexin A1 JBrowse link NW_004955512 5,686,508 5,703,645 RGD:9068941
G Fcer2 Fc fragment of IgE receptor II JBrowse link NW_004955563 1,587,471 1,596,707 RGD:9068941
G Il1b interleukin 1 beta JBrowse link NW_004955470 1,486,936 1,491,888 RGD:9068941
G Il1rn interleukin 1 receptor antagonist JBrowse link NW_004955470 1,145,022 1,159,413 RGD:9068941
G Mbp myelin basic protein JBrowse link NW_004955402 60,324,060 60,448,926 RGD:9068941
G Nfkbia NFKB inhibitor alpha JBrowse link NW_004955409 25,691,673 25,695,151 RGD:9068941
G Ngb neuroglobin JBrowse link NW_004955438 1,170,888 1,175,978 RGD:9068941
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link NW_004955422 19,602,930 19,612,263 RGD:9068941
G Syf2 SYF2 pre-mRNA splicing factor JBrowse link NW_004955452 4,850,049 4,856,647 RGD:9068941
G Tnf tumor necrosis factor JBrowse link NW_004955437 117,267 119,899 RGD:9068941
Herpes Simplex Encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoe apolipoprotein E JBrowse link NW_004955555 1,998,170 2,002,003 RGD:9068941
G Aqp4 aquaporin 4 JBrowse link NW_004955772 1,160 10,709 RGD:9068941
G Calcr calcitonin receptor JBrowse link NW_004955432 10,310,776 10,391,029 RGD:9068941
G Ccr2 C-C motif chemokine receptor 2 JBrowse link NW_004955420 25,641,184 25,664,413 RGD:9068941
G Cx3cr1 C-X3-C motif chemokine receptor 1 JBrowse link NW_004955427 24,691,206 24,705,599 RGD:9068941
G Gdnf glial cell derived neurotrophic factor JBrowse link NW_004955426 22,386,613 22,412,324 RGD:9068941
G Irf3 interferon regulatory factor 3 JBrowse link NW_004955559 1,223,986 1,228,671 RGD:9068941
G Lta lymphotoxin alpha JBrowse link NW_004955437 114,216 116,003 RGD:9068941
G Mmp2 matrix metallopeptidase 2 JBrowse link NW_004955433 13,024,844 13,050,041 RGD:9068941
G Mmp9 matrix metallopeptidase 9 JBrowse link NW_004955445 11,295,500 11,303,322 RGD:9068941
G Stat4 signal transducer and activator of transcription 4 JBrowse link NW_004955403 8,061,471 8,144,252 RGD:9068941
G Ticam1 toll like receptor adaptor molecule 1 JBrowse link NW_004955495 4,197,083 4,204,999 RGD:9068941
G Tlr2 toll like receptor 2 JBrowse link NW_004955471 8,011,710 8,019,063 RGD:9068941
G Tlr3 toll like receptor 3 JBrowse link NW_004955403 22,977,882 23,001,392 RGD:7240710
RGD:9068941
G Tlr4 toll like receptor 4 JBrowse link NW_004955419 10,190,937 10,201,896 RGD:9068941
G Tlr9 toll like receptor 9 JBrowse link NW_004955532 3,828,645 3,832,699 RGD:9068941
G Traf3 TNF receptor associated factor 3 JBrowse link NW_004955538 1,954,152 2,013,367 RGD:9068941
G Unc93b1 unc-93 homolog B1, TLR signaling regulator JBrowse link NW_004955422 17,814,174 17,823,945 RGD:9068941
Herpes Simplex Encephalitis 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tlr3 toll like receptor 3 JBrowse link NW_004955403 22,977,882 23,001,392 RGD:9068941
G Unc93b1 unc-93 homolog B1, TLR signaling regulator JBrowse link NW_004955422 17,814,174 17,823,945 RGD:7240710
RGD:9068941
Herpes Simplex Encephalitis 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amn amnion associated transmembrane protein JBrowse link NW_004955538 2,017,476 2,021,890 RGD:9068941
G Traf3 TNF receptor associated factor 3 JBrowse link NW_004955538 1,954,152 2,013,367 RGD:7240710
RGD:9068941
Herpes Simplex Encephalitis 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ticam1 toll like receptor adaptor molecule 1 JBrowse link NW_004955495 4,197,083 4,204,999 RGD:7240710
RGD:9068941
Herpes Simplex Encephalitis 7 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Irf3 interferon regulatory factor 3 JBrowse link NW_004955559 1,223,986 1,228,671 RGD:7240710
RGD:9068941
HIV Encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link NW_004955407 25,725,259 25,973,582 RGD:9068941
G Bace1 beta-secretase 1 JBrowse link NW_004955412 18,596,643 18,620,089 RGD:9068941
G Cdk5 cyclin dependent kinase 5 JBrowse link NW_004955491 5,491,744 5,497,280 RGD:9068941
G Mfn1 mitofusin 1 JBrowse link NW_004955420 8,541,547 8,596,494 RGD:9068941
Japanese encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Camk2n1 calcium/calmodulin dependent protein kinase II inhibitor 1 JBrowse link NW_004955452 1,044,696 1,046,657 RGD:9068941
Lupus Vasculitis, Central Nervous System term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Itgam integrin subunit alpha M JBrowse link NW_004955493 8,116,886 8,160,806 RGD:9068941
G Selp selectin P JBrowse link NW_004955462 7,658,371 7,692,870 RGD:9068941
meningoencephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aif1 allograft inflammatory factor 1 JBrowse link NW_004955437 157,509 158,919 RGD:9068941
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase JBrowse link NW_004955451 16,115,137 16,119,261 RGD:9068941
G Plat plasminogen activator, tissue type JBrowse link NW_004955536 730,962 754,333 RGD:9068941
Nasu-Hakola disease term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link NW_004955437 7,780,886 7,785,597 RGD:9068941
G Tyrobp transmembrane immune signaling adaptor TYROBP JBrowse link NW_004955468 2,673,657 2,677,633 RGD:7240710
RGD:9068941
tick-borne encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd40 CD40 molecule JBrowse link NW_004955445 11,191,817 11,202,156 RGD:9068941
G Cd40lg CD40 ligand JBrowse link NW_004955489 8,465,571 8,477,714 RGD:9068941
viral encephalitis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenoceptor beta 2 JBrowse link NW_004955415 5,515,157 5,517,198 RGD:9068941
G Becn1 beclin 1 JBrowse link NW_004955451 16,616,595 16,625,731 RGD:9068941
G Cd274 CD274 molecule JBrowse link NW_004955434 9,487,309 9,508,366 RGD:9068941
G E2f1 E2F transcription factor 1 JBrowse link NW_004955422 27,638,625 27,643,261 RGD:9068941
G Mmp9 matrix metallopeptidase 9 JBrowse link NW_004955445 11,295,500 11,303,322 RGD:9068941
G Oprm1 opioid receptor mu 1 JBrowse link NW_004955439 7,870,563 7,923,817 RGD:9068941
West Nile fever term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G S100b S100 calcium binding protein B JBrowse link NW_004955407 42,972,584 42,980,510 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 11322
    disease of anatomical entity 10993
      Immune & Inflammatory Diseases 2458
        Inflammation 1604
          encephalitis 51
            Anti-N-Methyl-D-Aspartate Receptor Encephalitis 0
            Bilateral Atresia of External Auditory Canal with Congenital Vertical Talus 0
            Cerebral Ventriculitis 0
            Hashimoto's Encephalitis 0
            Infectious Encephalitis + 34
            Limbic Encephalitis + 0
            Rasmussen Johnsen Thomsen Syndrome 0
            Rasmussen Subacute Encephalitis 0
            acute hemorrhagic encephalitis 0
            acute necrotizing encephalitis 0
            meningoencephalitis + 5
            post-vaccinal encephalitis 0
            syphilitic encephalitis 0
            von Economo's disease 0
Path 2
Term Annotations click to browse term
  disease 11322
    disease of anatomical entity 10993
      nervous system disease 8851
        central nervous system disease 7365
          brain disease 6779
            encephalitis 51
              Anti-N-Methyl-D-Aspartate Receptor Encephalitis 0
              Bilateral Atresia of External Auditory Canal with Congenital Vertical Talus 0
              Cerebral Ventriculitis 0
              Hashimoto's Encephalitis 0
              Infectious Encephalitis + 34
              Limbic Encephalitis + 0
              Rasmussen Johnsen Thomsen Syndrome 0
              Rasmussen Subacute Encephalitis 0
              acute hemorrhagic encephalitis 0
              acute necrotizing encephalitis 0
              meningoencephalitis + 5
              post-vaccinal encephalitis 0
              syphilitic encephalitis 0
              von Economo's disease 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.