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ONTOLOGY REPORT - ANNOTATIONS


Term:colorectal cancer
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Accession:DOID:9256 term browser browse the term
Definition:A large intestine cancer that is located_in the colon and/or located_in the rectum. (DO)
Synonyms:exact_synonym: CRC;   colorectal cancers;   malignant colorectal neoplasm
 narrow_synonym: COLORECTAL CANCER 1
 related_synonym: COLORECTAL ADENOMA AND CANCER, SUSCEPTIBILITY TO;   COLORECTAL CANCER WITH CHROMOSOMAL INSTABILITY;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 11;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 14q;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 16q;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 18;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 20p;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 8q23;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 8q24;   COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 9;   CRCS1;   CRCS11;   CRCS12;   CRCS2;   CRCS3;   CRCS5;   CRCS6;   CRCS7;   CRCS8;   CRCS9;   Colorectal cancer, increased risk, assoc. with;   colorectal cancer, susceptibility to;   colorectal cancer, susceptibility to, 1;   colorectal cancer, susceptibility to, 11;   colorectal cancer, susceptibility to, 12;   colorectal cancer, susceptibility to, 2;   colorectal cancer, susceptibility to, 3;   colorectal cancer, susceptibility to, 5;   colorectal cancer, susceptibility to, 6;   colorectal cancer, susceptibility to, 7;   colorectal cancer, susceptibility to, 8;   colorectal cancer, susceptibility to, 9
 alt_id: OMIM:114500;   OMIM:608812;   OMIM:611469;   OMIM:612229;   OMIM:612230;   OMIM:612231;   OMIM:612232;   OMIM:612589;   OMIM:612590;   OMIM:612592;   OMIM:615083
 xref: NCI:C2956;   NCI:C4978
For additional species annotation, visit the Alliance of Genome Resources.


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colorectal cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrb1 adhesion G protein-coupled receptor B1 JBrowse link 15 74,516,196 74,589,465 RGD:13831353
G Akap9 A kinase (PRKA) anchor protein (yotiao) 9 JBrowse link 5 3,927,736 4,080,204 RGD:8554872
G Akt1 thymoma viral proto-oncogene 1 JBrowse link 12 112,653,821 112,674,884 RGD:1643334
RGD:7240710
RGD:13209139
G Akt2 thymoma viral proto-oncogene 2 JBrowse link 7 27,591,552 27,640,826 RGD:2313394
G Antxr1 anthrax toxin receptor 1 JBrowse link 6 87,133,853 87,335,809 RGD:9684945
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:13592920
RGD:8554872
RGD:7240710
G Arid1a AT rich interactive domain 1A (SWI-like) JBrowse link 4 133,679,008 133,756,769 RGD:8554872
G Atf7 activating transcription factor 7 JBrowse link 15 102,525,946 102,625,464 RGD:11055686
G Aurka aurora kinase A JBrowse link 2 172,356,190 172,370,886 RGD:7240710
G Axin2 axin 2 JBrowse link 11 108,917,828 108,950,783 RGD:8554872
RGD:7240710
G Bambi BMP and activin membrane-bound inhibitor JBrowse link 18 3,507,011 3,516,404 RGD:14390154
RGD:14390156
G Barhl2 BarH like homeobox 2 JBrowse link 5 106,452,523 106,458,166 RGD:14392684
G Bax BCL2-associated X protein JBrowse link 7 45,461,695 45,466,903 RGD:7240710
G Braf Braf transforming gene JBrowse link 6 39,603,231 39,725,658 RGD:8554872
G Brca2 breast cancer 2, early onset JBrowse link 5 150,522,297 150,570,147 RGD:8554872
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link 11 86,058,136 86,201,215 RGD:11252105
RGD:8554872
RGD:11252117
G Bub1 BUB1, mitotic checkpoint serine/threonine kinase JBrowse link 2 127,800,197 127,831,859 RGD:1600539
RGD:7240710
G Bub1b BUB1B, mitotic checkpoint serine/threonine kinase JBrowse link 2 118,598,202 118,641,592 RGD:7240710
G Casp9 caspase 9 JBrowse link 4 141,793,612 141,815,978 RGD:13210582
RGD:13210584
G Ccnd1 cyclin D1 JBrowse link 7 144,929,931 144,939,831 RGD:7240710
RGD:8554872
G Chek2 checkpoint kinase 2 JBrowse link 5 110,839,800 110,874,140 RGD:2289706
RGD:8554872
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:2289840
RGD:7240710
G Ctnnbl1 catenin, beta like 1 JBrowse link 2 157,737,401 157,891,903 RGD:9850254
G Ctps2 cytidine 5'-triphosphate synthase 2 JBrowse link X 162,901,268 163,034,541 RGD:5132879
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 7 140,763,819 140,774,990 RGD:14700897
G Dcc deleted in colorectal carcinoma JBrowse link 18 71,253,613 72,351,228 RGD:8554872
RGD:7240710
G Dlc1 deleted in liver cancer 1 JBrowse link 8 36,567,739 36,953,184 RGD:7240710
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 3 118,562,109 119,432,924 RGD:11251746
G Dsn1 DSN1 homolog, MIS12 kinetochore complex component JBrowse link 2 156,995,062 157,007,075 RGD:27372885
G Eef1e1 eukaryotic translation elongation factor 1 epsilon 1 JBrowse link 13 38,645,691 38,659,028 RGD:10401218
G Egfr epidermal growth factor receptor JBrowse link 11 16,752,203 16,913,907 RGD:5131455
RGD:5131632
RGD:5131871
G Ep300 E1A binding protein p300 JBrowse link 15 81,586,209 81,652,077 RGD:7240710
G Erbb4 erb-b2 receptor tyrosine kinase 4 JBrowse link 1 68,031,884 69,108,576 RGD:2289977
G Esr2 estrogen receptor 2 (beta) JBrowse link 12 76,120,419 76,177,259 RGD:7364791
G F7 coagulation factor VII JBrowse link 8 13,025,506 13,035,809 RGD:11049532
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 5 33,721,724 33,737,068 RGD:7240710
G Flcn folliculin JBrowse link 11 59,791,408 59,810,039 RGD:7240710
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 JBrowse link 4 47,091,894 47,123,058 RGD:8554872
RGD:7240710
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 9 77,754,535 77,794,489 RGD:11049536
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link 2 113,748,675 113,758,648 RGD:8554872
G Gstm1 glutathione S-transferase, mu 1 JBrowse link 3 108,012,250 108,017,973 RGD:11353274
RGD:14700961
RGD:14700958
RGD:14700954
G Gstt1 glutathione S-transferase, theta 1 JBrowse link 10 75,783,813 75,798,584 RGD:11353274
RGD:14700995
RGD:14700986
RGD:14700954
G H2-Ab1 histocompatibility 2, class II antigen A, beta 1 JBrowse link 17 34,263,227 34,269,418 RGD:14974237
G Hdac1 histone deacetylase 1 JBrowse link 4 129,516,104 129,542,646 RGD:9590193
G Hdac3 histone deacetylase 3 JBrowse link 18 37,936,971 37,955,015 RGD:9590193
G Hdac5 histone deacetylase 5 JBrowse link 11 102,195,747 102,230,172 RGD:9590193
G Hdac7 histone deacetylase 7 JBrowse link 15 97,792,661 97,844,502 RGD:9590193
G Hfe homeostatic iron regulator JBrowse link 13 23,702,034 23,710,854 RGD:8694350
G Hk1 hexokinase 1 JBrowse link 10 62,268,855 62,379,920 RGD:11353883
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 13 58,391,132 58,403,343 RGD:9999439
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 1 178,321,108 178,338,891 RGD:9999439
G Hspa8 heat shock protein 8 JBrowse link 9 40,801,276 40,805,202 RGD:6480104
G Il6 interleukin 6 JBrowse link 5 30,013,114 30,019,975 RGD:14975287
G Jak1 Janus kinase 1 JBrowse link 4 101,151,974 101,265,282 RGD:18936998
G Kdm3b KDM3B lysine (K)-specific demethylase 3B JBrowse link 18 34,777,008 34,839,370 RGD:9586735
G Kdm4b lysine (K)-specific demethylase 4B JBrowse link 17 56,325,970 56,403,774 RGD:9587755
G Kif18a kinesin family member 18A JBrowse link 2 109,280,738 109,341,749 RGD:11554203
G Kif2c kinesin family member 2C JBrowse link 4 117,159,633 117,182,624 RGD:27372891
G Kras Kirsten rat sarcoma viral oncogene homolog JBrowse link 6 145,216,699 145,250,420 RGD:14398748
G L1cam L1 cell adhesion molecule JBrowse link X 73,853,778 73,880,838 RGD:6483011
G Lig4 ligase IV, DNA, ATP-dependent JBrowse link 8 9,970,020 9,977,680 RGD:8694072
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 11 49,846,728 49,886,421 RGD:13217416
G Mcc mutated in colorectal cancers JBrowse link 18 44,425,060 44,812,182 RGD:7240710
G Mir152 microRNA 152 JBrowse link 11 96,850,393 96,850,465 RGD:11341114
RGD:21066332
RGD:19165151
G Mir155 microRNA 155 JBrowse link 16 84,714,140 84,714,204 RGD:21079446
RGD:24922227
RGD:21403684
G Mir200c microRNA 200c JBrowse link 6 124,718,322 124,718,390 RGD:13217416
G Mir224 microRNA 224 JBrowse link X 72,261,031 72,261,112 RGD:14398749
G Mir30b microRNA 30b JBrowse link 15 68,337,415 68,337,510 RGD:13432037
G Mlh1 mutL homolog 1 JBrowse link 9 111,228,228 111,271,786 RGD:1625107
RGD:8554872
G Mlh3 mutL homolog 3 JBrowse link 12 85,234,466 85,270,647 RGD:8554872
RGD:7240710
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:2293519
RGD:8554872
G Msh6 mutS homolog 6 JBrowse link 17 87,975,050 87,990,892 RGD:8554872
G mt-Co1 cytochrome c oxidase I, mitochondrial JBrowse link MT 5,328 6,872 RGD:8554872
G mt-Co2 cytochrome c oxidase II, mitochondrial JBrowse link MT 7,013 7,696 RGD:8554872
G mt-Cytb cytochrome b, mitochondrial JBrowse link MT 14,145 15,288 RGD:8554872
G mt-Nd4l NADH dehydrogenase 4L, mitochondrial JBrowse link MT 9,877 10,173 RGD:8554872
G Mutyh mutY DNA glycosylase JBrowse link 4 116,807,636 116,819,439 RGD:8554872
G Ndc80 NDC80 kinetochore complex component JBrowse link 17 71,496,100 71,526,857 RGD:28867241
G Nfe2l2 nuclear factor, erythroid derived 2, like 2 JBrowse link 2 75,675,513 75,704,663 RGD:10412740
RGD:8554872
G Nras neuroblastoma ras oncogene JBrowse link 3 103,058,285 103,067,914 RGD:7240710
G Nuf2 NUF2, NDC80 kinetochore complex component JBrowse link 1 169,497,934 169,531,464 RGD:28867241
RGD:28867244
G Odc1 ornithine decarboxylase, structural 1 JBrowse link 12 17,544,808 17,551,502 RGD:7240710
G Pdgfrl platelet-derived growth factor receptor-like JBrowse link 8 40,926,233 40,990,782 RGD:7240710
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 32,397,065 32,466,112 RGD:8554872
RGD:7240710
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta JBrowse link 4 149,649,168 149,702,566 RGD:13432038
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 13 101,680,761 101,768,217 RGD:13432046
G Pla2g2a phospholipase A2, group IIA (platelets, synovial fluid) JBrowse link 4 138,831,857 138,835,189 RGD:7240710
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit JBrowse link 7 44,532,744 44,548,815 RGD:8554872
G Pole polymerase (DNA directed), epsilon JBrowse link 5 110,286,319 110,337,468 RGD:8554872
RGD:7240710
G Ptpn12 protein tyrosine phosphatase, non-receptor type 12 JBrowse link 5 20,986,645 21,055,911 RGD:7240710
G Ptprj protein tyrosine phosphatase, receptor type, J JBrowse link 2 90,429,756 90,580,694 RGD:7240710
G Rac1 Rac family small GTPase 1 JBrowse link 5 143,505,481 143,528,031 RGD:13432050
RGD:13432052
G Rad54b RAD54 homolog B (S. cerevisiae) JBrowse link 4 11,558,920 11,615,808 RGD:7240710
G Rhoa ras homolog family member A JBrowse link 9 108,306,160 108,337,943 RGD:13432052
G Scg5 secretogranin V JBrowse link 2 113,776,313 113,829,091 RGD:8554872
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A JBrowse link 3 88,435,959 88,461,182 RGD:8554872
G Smad4 SMAD family member 4 JBrowse link 18 73,634,790 73,703,791 RGD:8554872
G Smad7 SMAD family member 7 JBrowse link 18 75,367,365 75,395,935 RGD:7240710
RGD:8554872
G Src Rous sarcoma oncogene JBrowse link 2 157,423,906 157,471,838 RGD:7240710
G Stat3 signal transducer and activator of transcription 3 JBrowse link 11 100,886,806 100,939,594 RGD:13592920
G Tcf3 transcription factor 3 JBrowse link 10 80,409,541 80,433,976 RGD:13432058
RGD:13432063
RGD:13432062
RGD:13432061
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box JBrowse link 19 55,741,797 55,933,659 RGD:13450926
G Tgfb1 transforming growth factor, beta 1 JBrowse link 7 25,687,002 25,705,077 RGD:13432086
RGD:13432088
G Tgfb2 transforming growth factor, beta 2 JBrowse link 1 186,622,787 186,709,697 RGD:13432081
RGD:13432086
G Tgfb3 transforming growth factor, beta 3 JBrowse link 12 86,056,743 86,079,041 RGD:13432088
G Tgfbr2 transforming growth factor, beta receptor II JBrowse link 9 116,087,695 116,175,363 RGD:8554872
G Tlr2 toll-like receptor 2 JBrowse link 3 83,836,272 83,841,824 RGD:7240710
G Tnfsf9 tumor necrosis factor (ligand) superfamily, member 9 JBrowse link 17 57,105,287 57,107,758 RGD:2317353
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:8554872
RGD:7240710
RGD:14995500
RGD:14995499
RGD:14995486
RGD:14995449
G Trpv3 transient receptor potential cation channel, subfamily V, member 3 JBrowse link 11 73,267,489 73,300,368 RGD:7183081
G Txnip thioredoxin interacting protein JBrowse link 3 96,557,957 96,561,857 RGD:1642760
G Wrap53 WD repeat containing, antisense to Trp53 JBrowse link 11 69,561,754 69,580,250 RGD:21081520
RGD:21081528
G Xpo5 exportin 5 JBrowse link 17 46,202,811 46,243,598 RGD:11041733
G Xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 JBrowse link 5 25,689,814 25,705,797 RGD:8554872
ascending colon cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:8554872
colon adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anxa7 annexin A7 JBrowse link 14 20,455,261 20,480,133 RGD:2292654
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:1601201
RGD:8554872
G Bax BCL2-associated X protein JBrowse link 7 45,461,695 45,466,903 RGD:734633
G Csf2 colony stimulating factor 2 (granulocyte-macrophage) JBrowse link 11 54,247,270 54,249,899 RGD:10450245
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:1599637
G Daxx Fas death domain-associated protein JBrowse link 17 33,909,404 33,915,590 RGD:9587838
G Fech ferrochelatase JBrowse link 18 64,456,542 64,489,098 RGD:14700888
G Hmgb1 high mobility group box 1 JBrowse link 5 149,046,702 149,053,057 RGD:10402080
G Mapk1 mitogen-activated protein kinase 1 JBrowse link 16 16,983,382 17,047,453 RGD:13210775
G Mapk3 mitogen-activated protein kinase 3 JBrowse link 7 126,759,626 126,765,816 RGD:13210775
G Mgmt O-6-methylguanine-DNA methyltransferase JBrowse link 7 136,894,463 137,128,193 RGD:1599637
G Mir155 microRNA 155 JBrowse link 16 84,714,140 84,714,204 RGD:21409754
G Msh6 mutS homolog 6 JBrowse link 17 87,975,050 87,990,892 RGD:8554872
G Pcsk5 proprotein convertase subtilisin/kexin type 5 JBrowse link 19 17,432,314 17,837,712 RGD:11556207
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 32,397,065 32,466,112 RGD:5685670
G Pik3r3 phosphoinositide-3-kinase regulatory subunit 3 JBrowse link 4 116,221,400 116,303,056 RGD:13432053
G Rac1 Rac family small GTPase 1 JBrowse link 5 143,505,481 143,528,031 RGD:13432049
RGD:13432051
G Rad54l RAD54 like (S. cerevisiae) JBrowse link 4 116,094,261 116,123,700 RGD:8554872
G Srsf4 serine and arginine-rich splicing factor 4 JBrowse link 4 131,873,530 131,901,725 RGD:11039405
G Srsf5 serine and arginine-rich splicing factor 5 JBrowse link 12 80,945,495 80,950,507 RGD:11039405
G Srsf6 serine and arginine-rich splicing factor 6 JBrowse link 2 162,931,508 162,937,121 RGD:11039405
G Tert telomerase reverse transcriptase JBrowse link 13 73,626,911 73,649,843 RGD:11038656
G Tgfb1 transforming growth factor, beta 1 JBrowse link 7 25,687,002 25,705,077 RGD:13432089
G Vegfc vascular endothelial growth factor C JBrowse link 8 54,077,532 54,186,454 RGD:2315488
colon cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer3 alkaline ceramidase 3 JBrowse link 7 98,213,808 98,321,208 RGD:35673322
G Actr1a ARP1 actin-related protein 1A, centractin alpha JBrowse link 19 46,376,813 46,395,741 RGD:13831341
G Acvr2a activin receptor IIA JBrowse link 2 48,814,109 48,903,264 RGD:2301065
G Akt1 thymoma viral proto-oncogene 1 JBrowse link 12 112,653,821 112,674,884 RGD:8554872
G Akt3 thymoma viral proto-oncogene 3 JBrowse link 1 177,020,076 177,261,781 RGD:13209140
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 10 90,989,311 91,082,743 RGD:13703116
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:8554872
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 JBrowse link 6 122,577,792 122,603,024 RGD:625559
G Bad BCL2-associated agonist of cell death JBrowse link 19 6,941,861 6,951,905 RGD:10053668
G Bcl2 B cell leukemia/lymphoma 2 JBrowse link 1 106,538,176 106,714,290 RGD:10053668
G Bik BCL2-interacting killer JBrowse link 15 83,526,790 83,544,635 RGD:14394819
G Braf Braf transforming gene JBrowse link 6 39,603,231 39,725,658 RGD:8554872
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:1599497
G Brd4 bromodomain containing 4 JBrowse link 17 32,196,272 32,284,743 RGD:9586351
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:13209142
RGD:13209143
G Casp7 caspase 7 JBrowse link 19 56,396,833 56,442,348 RGD:13209143
G Ccl2 chemokine (C-C motif) ligand 2 JBrowse link 11 82,035,577 82,037,452 RGD:5135051
G Ccl3 chemokine (C-C motif) ligand 3 JBrowse link 11 83,647,843 83,649,378 RGD:5135051
G Ccnd2 cyclin D2 JBrowse link 6 127,125,162 127,152,188 RGD:2289181
G Cdh1 cadherin 1 JBrowse link 8 106,603,350 106,670,247 RGD:8554872
G Chaf1a chromatin assembly factor 1, subunit A (p150) JBrowse link 17 56,040,416 56,068,026 RGD:9587457
G Chka choline kinase alpha JBrowse link 19 3,851,585 3,894,369 RGD:10401869
G Crp C-reactive protein, pentraxin-related JBrowse link 1 172,698,056 172,699,966 RGD:6903278
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:8554872
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 JBrowse link 7 140,763,819 140,774,990 RGD:14700924
G Esr2 estrogen receptor 2 (beta) JBrowse link 12 76,120,419 76,177,259 RGD:8694174
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 5 33,721,724 33,737,068 RGD:8554872
G Flcn folliculin JBrowse link 11 59,791,408 59,810,039 RGD:8554872
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 16 38,089,001 38,246,084 RGD:10045586
G Hs3st2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 JBrowse link 7 121,391,585 121,501,768 RGD:2317633
G Ikbkb inhibitor of kappaB kinase beta JBrowse link 8 22,659,205 22,706,589 RGD:7495781
G Il10 interleukin 10 JBrowse link 1 131,019,845 131,024,970 RGD:11534627
G Kdm3a lysine (K)-specific demethylase 3A JBrowse link 6 71,588,970 71,632,990 RGD:9590225
G Lcn2 lipocalin 2 JBrowse link 2 32,384,637 32,387,739 RGD:2316492
G Map2k3 mitogen-activated protein kinase kinase 3 JBrowse link 11 60,932,054 60,952,811 RGD:7495808
G Mir126a microRNA 126a JBrowse link 2 26,591,357 26,591,429 RGD:13432043
G Mir155 microRNA 155 JBrowse link 16 84,714,140 84,714,204 RGD:21081546
RGD:11520828
G Mlh1 mutL homolog 1 JBrowse link 9 111,228,228 111,271,786 RGD:8554872
G Mmp3 matrix metallopeptidase 3 JBrowse link 9 7,445,822 7,455,975 RGD:2316492
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:8554872
G Mtus1 mitochondrial tumor suppressor 1 JBrowse link 8 40,990,912 41,133,983 RGD:2317016
G Muc2 mucin 2 JBrowse link 7 141,690,340 141,754,691 RGD:7349368
RGD:7349371
G Mutyh mutY DNA glycosylase JBrowse link 4 116,807,636 116,819,439 RGD:8554872
G Nanog Nanog homeobox JBrowse link 6 122,707,489 122,714,633 RGD:7240527
G Ncoa6 nuclear receptor coactivator 6 JBrowse link 2 155,390,656 155,473,911 RGD:9590137
G Nqo1 NAD(P)H dehydrogenase, quinone 1 JBrowse link 8 107,388,225 107,403,205 RGD:5133247
G Nras neuroblastoma ras oncogene JBrowse link 3 103,058,285 103,067,914 RGD:8554872
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 32,397,065 32,466,112 RGD:8554872
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 8 70,768,176 70,776,712 RGD:13432043
G Pik3r5 phosphoinositide-3-kinase regulatory subunit 5 JBrowse link 11 68,432,125 68,497,849 RGD:13432047
G Plk4 polo like kinase 4 JBrowse link 3 40,799,951 40,816,883 RGD:11075990
G Pms2 PMS1 homolog2, mismatch repair system component JBrowse link 5 143,909,901 143,972,745 RGD:8554872
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit JBrowse link 7 44,532,744 44,548,815 RGD:8554872
G Pole polymerase (DNA directed), epsilon JBrowse link 5 110,286,319 110,337,468 RGD:8554872
G Pparg peroxisome proliferator activated receptor gamma JBrowse link 6 115,360,879 115,490,404 RGD:1601444
G Prkaa1 protein kinase, AMP-activated, alpha 1 catalytic subunit JBrowse link 15 5,143,861 5,181,899 RGD:5685669
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:12859043
G Ptger3 prostaglandin E receptor 3 (subtype EP3) JBrowse link 3 157,566,821 157,644,758 RGD:9850265
G Reg1 regenerating islet-derived 1 JBrowse link 6 78,425,983 78,428,668 RGD:9850131
G Src Rous sarcoma oncogene JBrowse link 2 157,423,906 157,471,838 RGD:1601371
RGD:8554872
G Srsf1 serine and arginine-rich splicing factor 1 JBrowse link 11 88,046,499 88,053,757 RGD:11038730
G Tdgf1 teratocarcinoma-derived growth factor 1 JBrowse link 9 110,939,608 110,946,158 RGD:11561894
G Tff3 trefoil factor 3, intestinal JBrowse link 17 31,125,306 31,129,611 RGD:7349371
G Tgfb3 transforming growth factor, beta 3 JBrowse link 12 86,056,743 86,079,041 RGD:13432091
G Tgfbr2 transforming growth factor, beta receptor II JBrowse link 9 116,087,695 116,175,363 RGD:2301065
RGD:8554872
G Tnfrsf10b tumor necrosis factor receptor superfamily, member 10b JBrowse link 14 69,767,472 69,784,411 RGD:2325778
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:8554872
G Vegfa vascular endothelial growth factor A JBrowse link 17 46,016,993 46,032,377 RGD:5135051
G Xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 JBrowse link 5 25,689,814 25,705,797 RGD:8554872
colon carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt1 thymoma viral proto-oncogene 1 JBrowse link 12 112,653,821 112,674,884 RGD:8554872
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:8554872
G Axin2 axin 2 JBrowse link 11 108,917,828 108,950,783 RGD:8554872
G Bard1 BRCA1 associated RING domain 1 JBrowse link 1 71,027,535 71,103,141 RGD:8554872
G Bax BCL2-associated X protein JBrowse link 7 45,461,695 45,466,903 RGD:8554872
G Bcl10 B cell leukemia/lymphoma 10 JBrowse link 3 145,924,262 145,934,366 RGD:8554872
G Braf Braf transforming gene JBrowse link 6 39,603,231 39,725,658 RGD:11567267
RGD:8554872
G Brca2 breast cancer 2, early onset JBrowse link 5 150,522,297 150,570,147 RGD:8554872
G Brip1 BRCA1 interacting protein C-terminal helicase 1 JBrowse link 11 86,058,136 86,201,215 RGD:8554872
G Bub1 BUB1, mitotic checkpoint serine/threonine kinase JBrowse link 2 127,800,197 127,831,859 RGD:8554872
G Bub1b BUB1B, mitotic checkpoint serine/threonine kinase JBrowse link 2 118,598,202 118,641,592 RGD:8554872
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like JBrowse link 16 17,451,985 17,487,440 RGD:7488899
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:8554872
G Cxcl10 chemokine (C-X-C motif) ligand 10 JBrowse link 5 92,346,638 92,348,889 RGD:27095891
G Cxcl5 chemokine (C-X-C motif) ligand 5 JBrowse link 5 90,759,298 90,761,625 RGD:5135268
G Dcc deleted in colorectal carcinoma JBrowse link 18 71,253,613 72,351,228 RGD:8554872
G Dlc1 deleted in liver cancer 1 JBrowse link 8 36,567,739 36,953,184 RGD:8554872
G Ep300 E1A binding protein p300 JBrowse link 15 81,586,209 81,652,077 RGD:8554872
G Fancc Fanconi anemia, complementation group C JBrowse link 13 63,301,334 63,497,292 RGD:8554872
G Fance Fanconi anemia, complementation group E JBrowse link 17 28,313,530 28,326,574 RGD:8554872
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 5 33,721,724 33,737,068 RGD:8554872
G Flcn folliculin JBrowse link 11 59,791,408 59,810,039 RGD:8554872
G Flt1 FMS-like tyrosine kinase 1 JBrowse link 5 147,561,604 147,726,438 RGD:8554872
G Flt3l FMS-like tyrosine kinase 3 ligand JBrowse link 7 45,131,183 45,136,490 RGD:11049504
G Flt4 FMS-like tyrosine kinase 4 JBrowse link 11 49,609,679 49,652,739 RGD:8554872
G Hpgd hydroxyprostaglandin dehydrogenase 15 (NAD) JBrowse link 8 56,294,552 56,321,046 RGD:5688759
G Igf2r insulin-like growth factor 2 receptor JBrowse link 17 12,682,406 12,769,706 RGD:14985218
G Kdr kinase insert domain protein receptor JBrowse link 5 75,932,827 75,979,072 RGD:8554872
G Mcc mutated in colorectal cancers JBrowse link 18 44,425,060 44,812,182 RGD:8554872
G Mlh1 mutL homolog 1 JBrowse link 9 111,228,228 111,271,786 RGD:8554872
G Mlh3 mutL homolog 3 JBrowse link 12 85,234,466 85,270,647 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:8554872
G mt-Nd1 NADH dehydrogenase 1, mitochondrial JBrowse link MT 2,751 3,707 RGD:8554872
G Mutyh mutY DNA glycosylase JBrowse link 4 116,807,636 116,819,439 RGD:8554872
G Nras neuroblastoma ras oncogene JBrowse link 3 103,058,285 103,067,914 RGD:8554872
G Palb2 partner and localizer of BRCA2 JBrowse link 7 122,107,262 122,132,980 RGD:8554872
G Pdgfrl platelet-derived growth factor receptor-like JBrowse link 8 40,926,233 40,990,782 RGD:8554872
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 32,397,065 32,466,112 RGD:8554872
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit JBrowse link 7 44,532,744 44,548,815 RGD:8554872
G Pparg peroxisome proliferator activated receptor gamma JBrowse link 6 115,360,879 115,490,404 RGD:8554872
G Prf1 perforin 1 (pore forming protein) JBrowse link 10 61,297,751 61,304,684 RGD:6482822
G Ptpn12 protein tyrosine phosphatase, non-receptor type 12 JBrowse link 5 20,986,645 21,055,911 RGD:8554872
G Ptprj protein tyrosine phosphatase, receptor type, J JBrowse link 2 90,429,756 90,580,694 RGD:8554872
G Rad54b RAD54 homolog B (S. cerevisiae) JBrowse link 4 11,558,920 11,615,808 RGD:8554872
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit JBrowse link 10 39,731,561 39,875,211 RGD:8554872
G Tgfb1 transforming growth factor, beta 1 JBrowse link 7 25,687,002 25,705,077 RGD:13432074
G Tgfb2 transforming growth factor, beta 2 JBrowse link 1 186,622,787 186,709,697 RGD:13432074
RGD:13432084
G Tlr3 toll-like receptor 3 JBrowse link 8 45,395,665 45,411,075 RGD:21079438
G Tnfrsf17 tumor necrosis factor receptor superfamily, member 17 JBrowse link 16 11,313,232 11,320,074 RGD:2317311
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a JBrowse link 6 125,349,723 125,362,483 RGD:5131434
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b JBrowse link 4 145,212,368 145,246,870 RGD:5131434
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:8554872
G Tyms thymidylate synthase JBrowse link 5 30,038,546 30,073,645 RGD:5133430
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 JBrowse link 8 70,508,263 70,510,417 RGD:11352739
G Vegfa vascular endothelial growth factor A JBrowse link 17 46,016,993 46,032,377 RGD:15003195
colorectal adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP-binding cassette, sub-family B (MDR/TAP), member 1A JBrowse link 5 8,567,091 8,748,575 RGD:2312343
G Abcb1b ATP-binding cassette, sub-family B (MDR/TAP), member 1B JBrowse link 5 8,798,147 8,866,314 RGD:1598563
G Arpc2 actin related protein 2/3 complex, subunit 2 JBrowse link 1 74,236,490 74,268,209 RGD:11049173
G Bcl2l1 BCL2-like 1 JBrowse link 2 152,758,732 152,833,803 RGD:11353854
G Bcl2l2 BCL2-like 2 JBrowse link 14 54,883,366 54,890,858 RGD:14394422
G Birc7 baculoviral IAP repeat-containing 7 (livin) JBrowse link 2 180,928,609 180,934,010 RGD:13217408
G Braf Braf transforming gene JBrowse link 6 39,603,231 39,725,658 RGD:11567230
G Brd8 bromodomain containing 8 JBrowse link 18 34,598,611 34,624,863 RGD:9587763
G Cd44 CD44 antigen JBrowse link 2 102,811,141 102,901,669 RGD:2289356
G Dnmt3b DNA methyltransferase 3B JBrowse link 2 153,649,411 153,687,730 RGD:9589082
G Fos FBJ osteosarcoma oncogene JBrowse link 12 85,473,890 85,477,274 RGD:13210753
G Gata6 GATA binding protein 6 JBrowse link 18 11,052,510 11,085,636 RGD:13208874
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 16 38,089,001 38,246,084 RGD:13210767
G Gstm1 glutathione S-transferase, mu 1 JBrowse link 3 108,012,250 108,017,973 RGD:14700996
G Gstt1 glutathione S-transferase, theta 1 JBrowse link 10 75,783,813 75,798,584 RGD:14700996
RGD:14701003
G Hpca hippocalcin JBrowse link 4 129,111,570 129,125,919 RGD:9693683
G Jun jun proto-oncogene JBrowse link 4 95,049,036 95,052,222 RGD:13210753
G Kcnh1 potassium voltage-gated channel, subfamily H (eag-related), member 1 JBrowse link 1 192,189,144 192,510,159 RGD:9693694
G Kmt2b lysine (K)-specific methyltransferase 2B JBrowse link 7 30,568,855 30,589,056 RGD:9588601
G Mapk1 mitogen-activated protein kinase 1 JBrowse link 16 16,983,382 17,047,453 RGD:13210782
G Mapk3 mitogen-activated protein kinase 3 JBrowse link 7 126,759,626 126,765,816 RGD:13210782
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 14 33,377,898 33,447,353 RGD:13217408
G Raf1 v-raf-leukemia viral oncogene 1 JBrowse link 6 115,618,569 115,676,635 RGD:13217408
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:13210753
G Tyms thymidylate synthase JBrowse link 5 30,038,546 30,073,645 RGD:2317418
G Utp23 UTP23 small subunit processome component JBrowse link 15 51,877,441 51,884,622 RGD:11041896
Colorectal Cancer 10 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pold1 polymerase (DNA directed), delta 1, catalytic subunit JBrowse link 7 44,532,744 44,548,815 RGD:8554872
RGD:7240710
colorectal carcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr2 ARP2 actin-related protein 2 JBrowse link 11 20,062,304 20,112,951 RGD:11570560
G Actr3 ARP3 actin-related protein 3 JBrowse link 1 125,392,905 125,435,727 RGD:11570560
G Ager advanced glycosylation end product-specific receptor JBrowse link 17 34,597,460 34,600,937 RGD:7245559
G Akap12 A kinase (PRKA) anchor protein (gravin) 12 JBrowse link 10 4,266,329 4,359,471 RGD:14348959
G Antxr1 anthrax toxin receptor 1 JBrowse link 6 87,133,853 87,335,809 RGD:9684940
G Bmi1 Bmi1 polycomb ring finger oncogene JBrowse link 2 18,677,018 18,686,629 RGD:1580058
G Brd7 bromodomain containing 7 JBrowse link 8 88,329,894 88,362,252 RGD:9586444
G Calu calumenin JBrowse link 6 29,348,106 29,376,675 RGD:2316232
G Cbx7 chromobox 7 JBrowse link 15 79,915,804 79,971,143 RGD:9587355
G Cd59b CD59b antigen JBrowse link 2 104,069,781 104,085,790 RGD:9068941
G Chil1 chitinase-like 1 JBrowse link 1 134,182,156 134,190,031 RGD:4892637
G Gstm1 glutathione S-transferase, mu 1 JBrowse link 3 108,012,250 108,017,973 RGD:11564625
RGD:14700936
G Gstt1 glutathione S-transferase, theta 1 JBrowse link 10 75,783,813 75,798,584 RGD:14700936
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 17 33,646,233 33,685,458 RGD:10054273
G Itgb3 integrin beta 3 JBrowse link 11 104,608,000 104,670,476 RGD:5112894
G Mbd4 methyl-CpG binding domain protein 4 JBrowse link 6 115,840,697 115,853,400 RGD:9588975
G Mir152 microRNA 152 JBrowse link 11 96,850,393 96,850,465 RGD:21066329
G Msh3 mutS homolog 3 JBrowse link 13 92,211,878 92,355,004 RGD:1625103
G Msh6 mutS homolog 6 JBrowse link 17 87,975,050 87,990,892 RGD:1625103
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha JBrowse link 3 32,397,065 32,466,112 RGD:14402406
G Psmb9 proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2) JBrowse link 17 34,182,030 34,187,330 RGD:6483362
G Smad4 SMAD family member 4 JBrowse link 18 73,634,790 73,703,791 RGD:21066335
G Strap serine/threonine kinase receptor associated protein JBrowse link 6 137,735,082 137,751,930 RGD:1581429
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:14995498
Oligodontia-Colorectal Cancer Syndrome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin2 axin 2 JBrowse link 11 108,917,828 108,950,783 RGD:7240710
RGD:8554872
G Gna13 guanine nucleotide binding protein, alpha 13 JBrowse link 11 109,362,794 109,401,369 RGD:8554872
G Rgs9 regulator of G-protein signaling 9 JBrowse link 11 109,225,348 109,298,181 RGD:8554872
rectum adenocarcinoma term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:8554872
rectum cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il6 interleukin 6 JBrowse link 5 30,013,114 30,019,975 RGD:14975288
G Mir20a microRNA 20a JBrowse link 14 115,044,157 115,044,263 RGD:25823152
sigmoid colon cancer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:8554872
G Msh2 mutS homolog 2 JBrowse link 17 87,672,532 87,723,713 RGD:8554872
G Msh6 mutS homolog 6 JBrowse link 17 87,975,050 87,990,892 RGD:8554872

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 13272
    disease of anatomical entity 12755
      gastrointestinal system disease 4297
        intestinal disease 1398
          Intestinal Neoplasms 666
            Colorectal Neoplasms 645
              colorectal cancer 238
                Colorectal Cancer 10 1
                Oligodontia-Colorectal Cancer Syndrome 3
                colon cancer + 127
                colorectal carcinoma + 67
                rectum cancer + 3
Path 2
Term Annotations click to browse term
  disease 13272
    disease of anatomical entity 12755
      gastrointestinal system disease 4297
        Gastrointestinal Diseases 2493
          Gastrointestinal Neoplasms 1727
            Intestinal Neoplasms 666
              intestinal cancer 242
                large intestine cancer 238
                  colorectal cancer 238
                    Colorectal Cancer 10 1
                    Oligodontia-Colorectal Cancer Syndrome 3
                    colon cancer + 127
                    colorectal carcinoma + 67
                    rectum cancer + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.