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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Breast Neoplasms
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Accession:DOID:9008939 term browser browse the term
Definition:Tumors or cancer of the human BREAST.
Synonyms:exact_synonym: breast neoplasm;   breast tumor;   breast tumors;   human mammary neoplasm;   human mammary neoplasms
 narrow_synonym: BRIP1-related disorder
 primary_id: MESH:D001943
 alt_id: RDO:0001776
For additional species annotation, visit the Alliance of Genome Resources.



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Breast Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB1 ATP-binding cassette, sub-family B (MDR/TAP), member 1 ISO CTD Direct Evidence: marker/mechanism
DNA:polymorphism: :3435C>T (human)
CTD
RGD
PMID:19752884 PMID:22311042 RGD:2315550 NCBI chr 9:93,049,955...93,146,469 JBrowse link
G ABCC1 ATP binding cassette subfamily C member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25078270 NCBI chr 3:28,360,868...28,472,940
Ensembl chr 3:28,360,868...28,485,477
JBrowse link
G ABCG2 ATP-binding cassette, sub-family G (WHITE), member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10930538 NCBI chr 8:130,853,414...130,945,388
Ensembl chr 8:130,775,472...130,998,660
JBrowse link
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:20234815 NCBI chr 1:270,761,641...270,906,708
Ensembl chr 1:270,761,668...270,906,711
JBrowse link
G ACHE acetylcholinesterase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chr 3:8,732,451...8,738,274
Ensembl chr 3:8,732,324...8,739,149
JBrowse link
G ACTA2 actin alpha 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chr14:100,868,145...100,886,732
Ensembl chr14:100,867,733...100,886,713
JBrowse link
G ACVR1 activin A receptor type 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chr15:64,749,478...64,891,653
Ensembl chr15:64,748,761...64,892,153
JBrowse link
G ADAM10 ADAM metallopeptidase domain 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chr 1:113,289,480...113,407,940
Ensembl chr 1:113,289,197...113,413,569
JBrowse link
G ADAM33 ADAM metallopeptidase domain 33 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30226539 NCBI chr17:32,023,102...32,038,464
Ensembl chr17:32,023,072...32,037,884
JBrowse link
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23289900 NCBI chr13:190,277,175...190,285,957
Ensembl chr13:190,276,424...190,286,205
JBrowse link
G ADAR adenosine deaminase RNA specific ISO CTD Direct Evidence: marker/mechanism CTD PMID:28188287 NCBI chr 4:95,154,230...95,197,308
Ensembl chr 4:95,154,358...95,197,305
JBrowse link
G AFP alpha fetoprotein ISO CTD Direct Evidence: therapeutic CTD PMID:18497072 NCBI chr 8:69,677,690...69,698,864
Ensembl chr 8:69,677,684...69,698,864
JBrowse link
G AGER advanced glycosylation end-product specific receptor no_association ISO DNA:SNPs, insertion/deletion:promoter, :-374T>A, -429T/C (human)
DNA:SNP, haplotype: :rs184003 (human)
RGD PMID:18058469 PMID:22497255 PMID:24619131 RGD:8695964 RGD:8695984 RGD:8695989 NCBI chr 7:24,218,116...24,221,162
Ensembl chr 7:24,218,116...24,228,756
JBrowse link
G AGR2 anterior gradient 2, protein disulphide isomerase family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:20531310 NCBI chr 9:86,042,070...86,053,893
Ensembl chr 9:86,039,015...86,053,857
JBrowse link
G AHR aryl hydrocarbon receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21515334 PMID:22296396 NCBI chr 9:86,511,866...86,555,950
Ensembl chr 9:86,511,369...86,555,943
JBrowse link
G AKAP12 A-kinase anchoring protein 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 1:14,904,109...15,017,016
Ensembl chr 1:14,908,115...15,017,001
JBrowse link
G AKT1 AKT serine/threonine kinase 1 susceptibility ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast tumor
DNA:point mutation:cds:p.E17K (human)
protein:increased serine phosphorylation:breast
CTD
ClinVar
RGD
PMID:17611497 PMID:17892507 PMID:18256540 PMID:18392055 PMID:18504432 More... RGD:1643330 RGD:1643334
G AKT2 AKT serine/threonine kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chr 6:48,555,785...48,620,472
Ensembl chr 6:48,555,789...48,587,919
JBrowse link
G ALDOA aldolase, fructose-bisphosphate A ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr 3:18,246,036...18,260,167
Ensembl chr 3:18,234,787...18,260,256
JBrowse link
G ALK ALK receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:18724359 PMID:18923523 PMID:18923524 PMID:18923525 PMID:21242967 More... NCBI chr 3:109,411,146...110,105,755 JBrowse link
G ALKBH8 alkB homolog 8, tRNA methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 9:36,077,004...36,119,936
Ensembl chr 9:36,077,187...36,119,930
JBrowse link
G ANG angiogenin disease_progression ISO protein:increased expression:breast RGD PMID:9539780 PMID:9748135 PMID:15776477 RGD:2325702 RGD:2325712 RGD:2325714 NCBI chr 7:78,249,479...78,262,846
Ensembl chr 7:78,243,687...78,262,866
JBrowse link
G ANGPTL4 angiopoietin like 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chr 2:70,905,767...70,912,892
Ensembl chr 2:70,904,531...70,912,974
JBrowse link
G ANKRD34A ankyrin repeat domain 34A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 4:99,377,555...99,382,322
Ensembl chr 4:99,378,714...99,382,838
JBrowse link
G ANXA1 annexin A1 disease_progression ISO RGD PMID:20353277 RGD:7421540 NCBI chr 1:226,414,200...226,431,963
Ensembl chr 1:226,414,307...226,432,287
JBrowse link
G APC2 APC regulator of WNT signaling pathway 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 2:77,005,706...77,034,583
Ensembl chr 2:77,005,706...77,038,009
JBrowse link
G APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23389445 PMID:23852168 PMID:24728294 PMID:27643540 NCBI chr 5:9,098,676...9,115,965
Ensembl chr 5:9,097,719...9,116,369
JBrowse link
G APRT adenine phosphoribosyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr 6:890,272...893,278
Ensembl chr 6:890,831...893,277
JBrowse link
G AR androgen receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21633166 PMID:22174584 NCBI chr  X:53,609,113...53,806,778
Ensembl chr  X:53,609,176...53,805,578
JBrowse link
G ARAF A-Raf proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: therapeutic CTD PMID:12432273 NCBI chr  X:42,078,202...42,090,250
Ensembl chr  X:42,078,195...42,090,247
JBrowse link
G AREG amphiregulin ISO CTD Direct Evidence: therapeutic CTD PMID:11237771 NCBI chr 8:70,417,935...70,428,106
Ensembl chr 8:70,417,923...70,428,102
JBrowse link
G ARF1 ADP ribosylation factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27517156 NCBI chr 2:51,219,597...51,237,640
Ensembl chr 2:51,219,667...51,237,639
JBrowse link
G ARHGDIA Rho GDP dissociation inhibitor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr12:1,113,358...1,117,319
Ensembl chr12:1,113,355...1,121,311
JBrowse link
G ARID1A AT-rich interaction domain 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:31932695 NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,365...84,123,384
JBrowse link
G ARRDC3 arrestin domain containing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chr 2:98,430,451...98,444,835
Ensembl chr 2:98,430,465...98,444,647
JBrowse link
G ARTN artemin ISO CTD Direct Evidence: marker/mechanism CTD PMID:20305694 NCBI chr 6:167,356,363...167,361,370
Ensembl chr 6:167,357,662...167,358,674
JBrowse link
G ATG10 autophagy related 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:90,436,795...90,665,383
Ensembl chr 2:90,436,636...90,666,196
JBrowse link
G ATM ATM serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:6504056 PMID:7792600 PMID:8755918 PMID:8797579 PMID:8808599 More... NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,554
JBrowse link
G ATP6AP1L ATPase H+ transporting accessory protein 1 like ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:90,680,982...90,741,469 JBrowse link
G ATP7B ATPase copper transporting beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:11802810 NCBI chr11:15,892,549...15,942,070 JBrowse link
G AURKA aurora kinase A ISO CTD Direct Evidence: marker/mechanism CTD PMID:18497064 NCBI chr17:56,954,838...56,972,435 JBrowse link
G B4GAT1 beta-1,4-glucuronyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:6,043,594...6,045,220
Ensembl chr 2:6,043,494...6,045,818
JBrowse link
G BAG1 BAG cochaperone 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19066611 NCBI chr10:33,227,530...33,240,731
Ensembl chr10:33,227,338...33,240,724
JBrowse link
G BAP1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 PMID:26719535 NCBI chr13:34,544,570...34,553,538
Ensembl chr13:34,544,575...34,553,621
JBrowse link
G BARD1 BRCA1 associated RING domain 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast cancer
ClinVar Annotator: match by term: Breast tumor
CTD
ClinVar
PMID:25741868 PMID:26315354 PMID:26467025 PMID:28492532 PMID:30925164 NCBI chr15:117,049,483...117,135,889
Ensembl chr15:117,047,839...117,175,851
JBrowse link
G BAX BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: therapeutic CTD PMID:22572619 NCBI chr 6:54,222,341...54,228,150
Ensembl chr 6:54,187,260...54,228,144
JBrowse link
G BCAR3 BCAR3 adaptor protein, NSP family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chr 4:123,440,571...123,666,603
Ensembl chr 4:123,440,571...123,666,598
JBrowse link
G BCHE butyrylcholinesterase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chr13:104,946,732...105,007,568 JBrowse link
G BCL2A1 BCL2 related protein A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17659439 NCBI chr 7:48,887,227...48,897,667
Ensembl chr 7:48,887,094...48,897,870
JBrowse link
G BCL2L1 BCL2 like 1 ISO RGD PMID:17675586 RGD:1643478 NCBI chr17:35,366,139...35,415,798
Ensembl chr17:35,366,141...35,415,359
JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 disease_progression ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:blood
protein:increased expression:breast
CTD
RGD
PMID:16322251 PMID:16818634 PMID:17086357 PMID:17240580 PMID:18227733 More... RGD:2293090 RGD:2293092 RGD:2293104 RGD:2293105 NCBI chr12:3,747,276...3,755,214
Ensembl chr12:3,747,237...3,755,188
JBrowse link
G BMP2 bone morphogenetic protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr17:15,750,487...15,762,982
Ensembl chr17:15,749,835...15,761,215
JBrowse link
G BMP4 bone morphogenetic protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chr 1:183,415,989...183,422,888
Ensembl chr 1:183,416,134...183,792,417
JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chr15:105,971,577...106,132,496
Ensembl chr15:105,970,427...106,135,730
JBrowse link
G BRAF B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:12068308 PMID:15035987 PMID:17314276 PMID:19593635 PMID:22538770 More... NCBI chr18:8,957,963...9,132,558
Ensembl chr18:8,957,959...9,132,553
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:824983 PMID:2152385 PMID:2504116 PMID:3175448 PMID:6455195 More... NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCA2 BRCA2 DNA repair associated susceptibility ISO DNA:mutation
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast cancer
CTD Direct Evidence: marker/mechanism
RGD
ClinVar
CTD
PMID:8075631 PMID:8524414 PMID:8665505 PMID:8673091 PMID:8673092 More... RGD:1599503 NCBI chr11:8,805,950...8,858,128 JBrowse link
G BRF1 BRF1 RNA polymerase III transcription initiation factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:32198086
G BRIP1 BRCA1 interacting helicase 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast cancer
ClinVar Annotator: match by term: Breast tumor
CTD
ClinVar
PMID:16116421 PMID:16116423 PMID:16116424 PMID:16153896 PMID:17033622 More... NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,443,697...36,634,088
JBrowse link
G BTK Bruton tyrosine kinase ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:24869598 PMID:25082755 PMID:25189416 PMID:25741868 PMID:27199251 More... NCBI chr  X:82,981,512...83,014,475
Ensembl chr  X:82,981,515...83,014,573
JBrowse link
G C1QBP complement C1q binding protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr12:51,548,361...51,553,076
Ensembl chr12:51,548,415...51,555,689
JBrowse link
G C9H11orf65 chromosome 9 C11orf65 homolog ISO ClinVar Annotator: match by term: Breast cancer
ClinVar Annotator: match by term: Breast neoplasm
ClinVar PMID:6504056 PMID:7792600 PMID:8755918 PMID:8797579 PMID:8808599 More... NCBI chr 9:36,768,819...36,855,318
Ensembl chr 9:36,769,342...36,849,575
JBrowse link
G CADM1 cell adhesion molecule 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17260099 NCBI chr 9:42,644,487...42,984,934
Ensembl chr 9:42,634,855...42,984,879
JBrowse link
G CASP6 caspase 6 ISO protein:increased expression:breast RGD PMID:10574243 PMID:15210759 RGD:2301338 RGD:2301339 NCBI chr 8:112,519,450...112,534,315
Ensembl chr 8:112,483,392...112,540,550
JBrowse link
G CASP7 caspase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chr14:124,017,776...124,050,369
Ensembl chr14:124,018,568...124,050,366
JBrowse link
G CASP8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15601643 PMID:17293864 PMID:17450141 PMID:29915430 NCBI chr15:104,923,659...104,948,470
Ensembl chr15:104,923,953...104,948,470
JBrowse link
G CAT catalase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25322848 NCBI chr 2:26,493,664...26,533,881
Ensembl chr 2:26,487,653...26,581,452
JBrowse link
G CAV1 caveolin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19234134 PMID:19288272 PMID:20562527 PMID:21501481 NCBI chr18:29,648,120...29,682,451
Ensembl chr18:29,649,992...29,682,465
JBrowse link
G CCL20 C-C motif chemokine ligand 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr15:129,172,743...129,176,069 JBrowse link
G CCL5 C-C motif chemokine ligand 5 ISO RGD PMID:18708360 RGD:4891915 NCBI chr12:39,652,731...39,659,121
Ensembl chr12:39,648,598...39,659,118
JBrowse link
G CCND1 cyclin D1 disease_progression
susceptibility
ISO protein:increased expression:breast
DNA:polymorphism
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:12839951 PMID:15647071 PMID:17255770 PMID:18194538 PMID:19636701 More... RGD:2289126 RGD:2289131 NCBI chr 2:3,621,242...3,633,380
Ensembl chr 2:3,621,246...3,633,296
JBrowse link
G CCND2 cyclin D2 ISO DNA:hypermethylation:breast
DNA, mRNA, protein:hypermethylation, decreased expression:promoter, breast
RGD PMID:11289162 PMID:17549626 RGD:2289149 RGD:2289158 NCBI chr 5:66,092,483...66,114,575
Ensembl chr 5:66,087,379...66,114,571
JBrowse link
G CCND3 cyclin D3 ISO DNA:polymorphism:promoter:-677C>T (human) RGD PMID:19142864 RGD:2316005 NCBI chr 7:37,087,336...37,182,462
Ensembl chr 7:37,082,097...37,181,366
JBrowse link
G CCNE1 cyclin E1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19385967 PMID:23624423 NCBI chr 6:39,919,541...39,933,224
Ensembl chr 6:39,919,624...39,933,366
JBrowse link
G CCNH cyclin H ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 2:94,980,938...95,019,053
Ensembl chr 2:94,980,940...95,018,726
JBrowse link
G CCT5 chaperonin containing TCP1 subunit 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr16:72,211,452...72,223,202
Ensembl chr16:72,208,012...72,223,114
JBrowse link
G CD109 CD109 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 1:92,081,675...92,241,079
Ensembl chr 1:92,048,461...92,286,747
JBrowse link
G CD40 CD40 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:17043144 NCBI chr17:48,286,116...48,298,188
Ensembl chr17:48,286,029...48,298,528
JBrowse link
G CD44 CD44 molecule ISO mRNA:splice variants:breast RGD PMID:18091389 RGD:2289345 NCBI chr 2:25,788,699...25,884,209
Ensembl chr 2:25,788,704...25,884,153
JBrowse link
G CD74 CD74 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:19602265 NCBI chr 2:151,402,210...151,409,924 JBrowse link
G CDA cytidine deaminase ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:10811482 PMID:25330770 NCBI chr 6:78,824,248...78,849,154
Ensembl chr 6:78,824,284...78,879,462
JBrowse link
G CDH1 cadherin 1 ISO DNA:hypermethylation:promoter, breast, serum
ClinVar Annotator: match by term: Breast tumor
protein:decreased expression:breast
CTD Direct Evidence: marker/mechanism|therapeutic
RGD
ClinVar
CTD
PMID:11305955 PMID:17520682 PMID:18210882 PMID:18225549 PMID:19839049 More... RGD:2289447 RGD:2289457 NCBI chr 6:18,075,487...18,155,986
Ensembl chr 6:18,075,480...18,155,986
JBrowse link
G CDH2 cadherin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 6:112,396,713...112,629,073
Ensembl chr 6:112,396,721...112,628,432
JBrowse link
G CDH5 cadherin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 6:27,108,560...27,142,145
Ensembl chr 6:27,108,609...27,142,180
JBrowse link
G CDKN1A cyclin dependent kinase inhibitor 1A disease_progression ISO DNA:snp: :rs3176336 RGD PMID:16537179 PMID:18174243 RGD:2289652 RGD:2289656 NCBI chr 7:32,354,776...32,363,771
Ensembl chr 7:32,359,455...32,363,761
JBrowse link
G CDKN1B cyclin dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:17092400 NCBI chr 5:59,731,224...59,735,831
Ensembl chr 5:59,731,206...59,735,831
JBrowse link
G CENPF centromere protein F ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr 9:128,948,386...129,012,241
Ensembl chr 9:128,948,497...129,012,218
JBrowse link
G CFL1 cofilin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr 2:6,471,558...6,475,019
Ensembl chr 2:6,469,254...6,475,035
JBrowse link
G CFTR CF transmembrane conductance regulator ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:10925568 PMID:12874665 PMID:15905293 PMID:17539902 PMID:25580864 More... NCBI chr18:28,627,717...28,818,209
Ensembl chr18:28,627,728...28,817,950
JBrowse link
G CHEK1 checkpoint kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25688741 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,726,885...52,790,706
JBrowse link
G CHEK2 checkpoint kinase 2 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:10617473 PMID:11053450 PMID:11479205 PMID:11719428 PMID:11967536 More... NCBI chr14:45,699,833...45,967,350
Ensembl chr14:45,926,613...45,967,296
JBrowse link
G CLDN1 claudin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 PMID:24014025 NCBI chr13:127,714,857...127,730,628
Ensembl chr13:127,712,767...127,730,657
JBrowse link
G CLDN4 claudin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19142967 NCBI chr 3:11,039,711...11,053,930
Ensembl chr 3:11,039,706...11,053,925
JBrowse link
G CLIC1 chloride intracellular channel 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr 7:23,842,829...23,851,162 JBrowse link
G CLU clusterin treatment
severity
ISO RGD PMID:17203891 PMID:22613415 RGD:8729187 RGD:8764690 NCBI chr14:11,336,585...11,352,569
Ensembl chr14:11,336,590...11,352,475
JBrowse link
G CLUL1 clusterin like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 6:105,662,585...105,707,323
Ensembl chr 6:105,667,288...105,707,335
JBrowse link
G CMC2 C-X9-C motif containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr 6:7,254,937...7,278,714 JBrowse link
G CNR2 cannabinoid receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16818634 NCBI chr 6:81,659,162...81,692,550
Ensembl chr 6:81,659,165...81,692,550
JBrowse link
G COL7A1 collagen type VII alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr13:31,262,750...31,295,112 JBrowse link
G COMT catechol-O-methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:9407957 PMID:15455371 PMID:16077979 NCBI chr14:51,384,729...51,403,997
Ensembl chr14:51,385,133...51,403,998
JBrowse link
G COTL1 coactosin like F-actin binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr 6:4,099,341...4,146,281 JBrowse link
G CPT1A carnitine palmitoyltransferase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr 2:4,250,642...4,293,914
Ensembl chr 2:4,233,099...4,293,984
JBrowse link
G CRADD CASP2 and RIPK1 domain containing adaptor with death domain disease_progression ISO RGD PMID:17651480 RGD:2298902 NCBI chr 5:89,257,603...89,480,414
Ensembl chr 5:89,242,169...89,586,239
JBrowse link
G CRHR1 corticotropin releasing hormone receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr12:17,251,361...17,306,308
Ensembl chr12:17,252,018...17,306,319
JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein ISO RGD PMID:16391854 RGD:7488899 NCBI chr14:50,528,950...50,558,664
Ensembl chr14:50,528,954...50,558,663
JBrowse link
G CSF1 colony stimulating factor 1 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:16618760 RGD:2293640 NCBI chr 4:110,178,466...110,198,232
Ensembl chr 4:110,178,478...110,197,901
JBrowse link
G CSF1R colony stimulating factor 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16618760 NCBI chr 2:151,102,138...151,130,311
Ensembl chr 2:151,102,138...151,147,634
JBrowse link
G CSF2 colony stimulating factor 2 ISO CTD Direct Evidence: therapeutic CTD PMID:11325840 NCBI chr 2:134,354,724...134,357,155
Ensembl chr 2:134,354,724...134,357,155
JBrowse link
G CSF3 colony stimulating factor 3 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:7541186 PMID:7543699 PMID:7692001 PMID:9018096 PMID:12926135 More... NCBI chr12:22,333,445...22,335,949
Ensembl chr12:22,333,445...22,342,163
JBrowse link
G CST6 cystatin E/M ISO CTD Direct Evidence: marker/mechanism CTD PMID:17043665 NCBI chr 2:6,323,737...6,325,519
Ensembl chr 2:6,323,737...6,325,477
JBrowse link
G CTNNA1 catenin alpha 1 ISO protein:increased expression:breast
protein:decreased expression:breast
RGD PMID:11431364 PMID:17223851 RGD:2289792 RGD:2289796 NCBI chr 2:140,682,776...140,869,828
Ensembl chr 2:140,682,371...140,871,334
JBrowse link
G CTNNB1 catenin beta 1 disease_progression ISO protein:decreased expression:breast
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:12165863 PMID:16707478 PMID:17223851 PMID:25330770 RGD:2289792 RGD:2289831 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G CTU2 cytosolic thiouridylase subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 6:964,551...976,881
Ensembl chr 6:964,566...976,832
JBrowse link
G CUL5 cullin 5 ISO CTD Direct Evidence: therapeutic CTD PMID:20949323 NCBI chr 9:36,419,806...36,507,681
Ensembl chr 9:36,419,913...36,524,637
JBrowse link
G CXCL12 C-X-C motif chemokine ligand 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18521742 NCBI chr14:91,516,383...91,543,857
Ensembl chr14:91,516,429...91,552,766
JBrowse link
G CXCL2 chemokine (C-X-C motif) ligand 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 8:70,157,253...70,159,145
Ensembl chr 8:70,054,888...70,159,145
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 NCBI chr 8:69,932,646...69,935,861
Ensembl chr 8:69,932,643...69,935,861
JBrowse link
G CXCL9 C-X-C motif chemokine ligand 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chr 8:71,665,541...71,670,236
Ensembl chr 8:71,663,495...71,670,271
JBrowse link
G CXCR4 C-X-C motif chemokine receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25753200 NCBI chr15:15,663,652...15,666,706
Ensembl chr15:15,663,494...15,667,233
JBrowse link
G CYP17A1 cytochrome P450 family 17 subfamily A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19913079 NCBI chr14:113,805,616...113,820,445
Ensembl chr14:113,805,611...113,812,041
JBrowse link
G CYP19A3 cytochrome P450 19A3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 PMID:19639193 PMID:23342035 PMID:28112739 PMID:29701941 NCBI chr 1:120,476,890...120,556,103
Ensembl chr 1:120,367,667...120,695,899
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16792888 NCBI chr 7:58,802,887...58,809,155
Ensembl chr 7:58,780,105...58,809,755
JBrowse link
G CYP1B1 cytochrome P450 family 1 subfamily B member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17297925 NCBI chr 3:102,195,743...102,205,687
Ensembl chr 3:102,195,741...102,206,750
JBrowse link
G CYP24A1 cytochrome P450 family 24 subfamily A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16280049 NCBI chr17:55,110,546...55,130,328
Ensembl chr17:55,110,590...55,130,363
JBrowse link
G CYP2D6 cytochrome P450 family 2 subfamily D member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19597703 NCBI chr 5:6,539,021...6,543,643
Ensembl chr 5:6,538,907...6,543,643
JBrowse link
G DAP3 death associated protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:94,256,460...94,298,492
Ensembl chr 4:94,248,230...94,297,223
JBrowse link
G DDIT3 DNA damage inducible transcript 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14604972 NCBI chr 5:22,785,441...22,789,867
Ensembl chr 5:22,785,441...22,791,134
JBrowse link
G DEK DEK proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 7:13,901,562...13,935,477
Ensembl chr 7:13,872,775...13,935,173
JBrowse link
G DEPP1 DEPP1 autophagy regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr14:91,118,332...91,120,242
Ensembl chr14:91,114,441...91,122,191
JBrowse link
G DES desmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chr15:121,428,539...121,435,426
Ensembl chr15:121,427,103...121,435,424
JBrowse link
G DHFR dihydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21501481 PMID:28188287 NCBI chr 2:89,230,660...89,255,830 JBrowse link
G DICER1 dicer 1, ribonuclease III ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:21266384 PMID:24728327 PMID:25741868 PMID:28492532 PMID:29474644 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G DIO3 iodothyronine deiodinase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770
G DKK1 dickkopf WNT signaling pathway inhibitor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chr14:97,487,854...97,490,118
Ensembl chr14:97,487,226...97,490,450
JBrowse link
G DLL1 delta like canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 1:198,815...211,346
Ensembl chr 1:199,231...211,344
JBrowse link
G DLL4 delta like canonical Notch ligand 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 1:130,376,720...130,386,411
Ensembl chr 1:130,376,720...130,386,713
JBrowse link
G DNMT1 DNA methyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22520950 PMID:28544374 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G DNMT3A DNA methyltransferase 3 alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:22520950 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:18221536 PMID:22520950 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G DPYD dihydropyrimidine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19020767 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DTX3 deltex E3 ubiquitin ligase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr 5:22,867,691...22,873,413
Ensembl chr 5:22,867,711...22,873,421
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chr 9:33,720,920...34,039,954
Ensembl chr 9:33,720,877...34,039,950
JBrowse link
G E2F1 E2F transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14672398 NCBI chr17:37,178,587...37,190,118
Ensembl chr17:37,178,598...37,189,841
JBrowse link
G EDNRB endothelin receptor type B ISO CTD Direct Evidence: therapeutic CTD PMID:16244791 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884
JBrowse link
G EEF1B2 eukaryotic translation elongation factor 1 beta 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr15:109,451,901...109,455,529
Ensembl chr15:109,451,514...109,455,531
JBrowse link
G EEF2 eukaryotic translation elongation factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chr 2:74,746,541...74,756,687
Ensembl chr 2:74,747,080...74,756,680
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19115204 NCBI chr 3:85,407,677...85,473,251
Ensembl chr 3:85,268,311...85,473,254
JBrowse link
G EFNA1 ephrin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20154726 NCBI chr 4:94,666,457...94,673,442
Ensembl chr 4:94,666,460...94,674,072
JBrowse link
G EGF epidermal growth factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16175315 PMID:21942447 PMID:23064031 NCBI chr 8:112,235,607...112,330,062
Ensembl chr 8:112,234,365...112,330,046
JBrowse link
G EGFR epidermal growth factor receptor disease_progression ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:lung, tumor (mouse)
CTD
RGD
PMID:16950593 PMID:18768436 PMID:19075277 PMID:20135347 PMID:20941507 More... RGD:5037225 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,478,882
JBrowse link
G EIF2S2 eukaryotic translation initiation factor 2 subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr17:37,551,182...37,570,269
Ensembl chr17:37,538,316...37,570,225
JBrowse link
G EIF6 eukaryotic translation initiation factor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr17:38,638,295...38,643,918
Ensembl chr17:38,609,945...38,643,932
JBrowse link
G ELK3 ETS transcription factor ELK3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chr 5:87,285,237...87,355,201
Ensembl chr 5:87,285,238...87,354,196
JBrowse link
G ELP1 elongator acetyltransferase complex subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 1:249,905,550...249,980,570
Ensembl chr 1:249,905,472...249,981,641
JBrowse link
G ELP3 elongator acetyltransferase complex subunit 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr14:11,832,947...11,940,080
Ensembl chr14:11,832,134...11,940,069
JBrowse link
G EMSY EMSY transcriptional repressor, BRCA2 interacting ISO CTD Direct Evidence: marker/mechanism CTD PMID:19636701 NCBI chr 9:10,628,053...10,715,814
Ensembl chr 9:10,628,053...10,716,402
JBrowse link
G ENG endoglin treatment ISO RGD PMID:21431419 RGD:7257526 NCBI chr 1:268,309,379...268,343,861
Ensembl chr 1:268,306,120...268,343,827
JBrowse link
G ENO1 enolase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19655245 NCBI chr 6:69,385,879...69,401,664
Ensembl chr 6:69,385,882...69,401,117
JBrowse link
G EP300 E1A binding protein p300 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chr 5:7,311,165...7,394,515
Ensembl chr 5:7,311,171...7,393,760
JBrowse link
G EPB41L3 erythrocyte membrane protein band 4.1 like 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17260099 NCBI chr 6:101,420,376...101,671,177
Ensembl chr 6:101,420,396...101,671,170
JBrowse link
G EPHB4 EPH receptor B4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chr 3:8,671,052...8,689,778
Ensembl chr 3:8,668,858...8,689,766
JBrowse link
G EPOR erythropoietin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19706814 NCBI chr 2:70,063,601...70,068,821
Ensembl chr 2:70,063,515...70,068,821
JBrowse link
G ERBB2 erb-b2 receptor tyrosine kinase 2 disease_progression
treatment
ISO DNA:amplification
ClinVar Annotator: match by term: Breast cancer
mRNA:increased expression:blood
protein:increased expression:breast
CTD Direct Evidence: marker/mechanism|therapeutic
RGD
ClinVar
CTD
PMID:10897039 PMID:11222871 PMID:11248153 PMID:11583189 PMID:11970740 More... RGD:10401078 RGD:2289921 RGD:2289922 RGD:2289924 RGD:2289931 RGD:2292909 NCBI chr12:22,591,621...22,621,384
Ensembl chr12:22,590,725...22,621,351
JBrowse link
G ERBB3 erb-b2 receptor tyrosine kinase 3 disease_progression ISO mRNA:increased expression:breast
ClinVar Annotator: match by term: Breast cancer
CTD Direct Evidence: marker/mechanism
DNA:amplification
RGD
ClinVar
CTD
PMID:17465220 PMID:18182100 PMID:21638049 PMID:26619011 PMID:28114269 RGD:2289942 RGD:2289949 NCBI chr 5:21,474,218...21,495,040
Ensembl chr 5:21,431,656...21,496,279
JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 disease_progression
susceptibility
ISO mRNA:increased expression:breast
DNA:amplification
DNA:polymorphism:promoter:-782G>T (human)
RGD PMID:17465220 PMID:18094435 PMID:18182100 RGD:2289942 RGD:2289949 RGD:2289977 NCBI chr15:113,966,573...115,096,984
Ensembl chr15:113,973,037...114,696,375
JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit disease_progression ISO DNA:SNP:exon:p.K751Q (rs13181) (human) RGD PMID:19307510 RGD:11340203 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ESR1 estrogen receptor 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast cancer
DNA:SNP:3' utr:rs2747648 (human)
CTD
ClinVar
RGD
PMID:17417639 PMID:19028706 PMID:20104649 PMID:20458558 PMID:20966540 More... RGD:8553054 NCBI chr 1:14,217,032...14,604,906
Ensembl chr 1:14,217,036...14,493,363
JBrowse link
G ESR2 estrogen receptor 2 disease_progression
treatment
ISO mRNA, protein:increased expression:breast
CTD Direct Evidence: marker/mechanism|therapeutic
RGD
CTD
PMID:17132221 PMID:18234277 PMID:19434490 PMID:19548127 PMID:24047421 RGD:2290017 RGD:8552984 NCBI chr 1:193,823,666...193,907,330
Ensembl chr 1:193,722,164...193,906,565
JBrowse link
G ESRRA estrogen related receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:20961995 NCBI chr 2:7,803,504...7,812,868
Ensembl chr 2:7,803,510...7,813,836
JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr13:202,464,341...202,483,534
Ensembl chr13:202,468,721...202,484,610
JBrowse link
G ETV4 ETS variant transcription factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21679465 NCBI chr12:19,531,507...19,548,303
Ensembl chr12:19,531,505...19,548,303
JBrowse link
G EVL Enah/Vasp-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 7:120,911,814...121,056,556
Ensembl chr 7:120,911,220...121,056,558
JBrowse link
G EXO1 exonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chr10:15,317,555...15,360,593
Ensembl chr10:15,317,581...15,359,839
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:21903722 NCBI chr 9:109,384,976...109,450,943
Ensembl chr 9:109,384,995...109,450,941
JBrowse link
G F3 coagulation factor III, tissue factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:15562024 NCBI chr 4:122,827,018...122,837,673
Ensembl chr 4:122,826,992...122,837,672
JBrowse link
G FABP7 fatty acid binding protein 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22322885 NCBI chr 1:39,872,198...39,876,272
Ensembl chr 1:39,871,145...39,876,387
JBrowse link
G FASLG Fas ligand susceptibility ISO protein:increased expression:breast
DNA:polymorphism:promoter:-844T>C
RGD PMID:10640988 PMID:17183065 RGD:2290054 RGD:2290134 NCBI chr 9:115,068,314...115,075,147
Ensembl chr 9:115,068,090...115,076,475
JBrowse link
G FASN fatty acid synthase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17089011 PMID:18281512 NCBI chr12:922,405...937,560
Ensembl chr12:920,507...937,559
JBrowse link
G FBL fibrillarin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 6:48,314,782...48,326,433
Ensembl chr 6:48,314,783...48,326,436
JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:17588203 PMID:26619011 NCBI chr 8:76,482,027...76,699,354
Ensembl chr 8:76,482,022...76,699,351
JBrowse link
G FGD5 FYVE, RhoGEF and PH domain containing 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr13:69,594,225...69,724,051
Ensembl chr13:69,594,222...69,724,056
JBrowse link
G FGF10 fibroblast growth factor 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18438407 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G FGF3 fibroblast growth factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21936542 NCBI chr 2:3,489,208...3,496,532
Ensembl chr 2:3,489,208...3,496,532
JBrowse link
G FGF4 fibroblast growth factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21936542 NCBI chr 2:3,527,113...3,529,011
Ensembl chr 2:3,527,113...3,528,873
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20179196 PMID:21936542 NCBI chr15:48,053,895...48,106,634
Ensembl chr15:48,053,340...48,106,746
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:17525745 PMID:17529967 PMID:17529973 PMID:18438407 PMID:18552176 More... NCBI chr14:131,183,095...131,285,001
Ensembl chr14:131,181,710...131,579,703
JBrowse link
G FGFR4 fibroblast growth factor receptor 4 ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:19946327 NCBI chr 2:80,841,536...80,853,791
Ensembl chr 2:80,841,536...80,853,796
JBrowse link
G FHIT fragile histidine triad diadenosine triphosphatase severity ISO lobular breast cancer; DNA:loss of heterozygosity::LOH within the FHIT gene in 16% of cases, significant association between LOH and reduced or negative expression
protein:decreased expression:breast:frequency increases from 0% in nonproliferative benign breast disease to 41% in invasive carcinoma
RGD PMID:10930803 PMID:17164758 RGD:2289872 RGD:2289898 NCBI chr13:41,443,963...42,884,799
Ensembl chr13:41,443,965...42,228,680
JBrowse link
G FHL2 four and a half LIM domains 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17682292 NCBI chr 3:49,389,900...49,448,459
Ensembl chr 3:49,363,555...49,467,527
JBrowse link
G FKBPL FKBP prolyl isomerase like ISO CTD Direct Evidence: therapeutic CTD PMID:20103631 NCBI chr 7:24,172,227...24,174,553
Ensembl chr 7:24,172,227...24,173,565
JBrowse link
G FLACC1 flagellum associated containing coiled-coil domains 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr15:104,950,504...104,986,350
Ensembl chr15:104,950,695...104,985,811
JBrowse link
G FLNA filamin A ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chr  X:124,889,934...124,915,000
Ensembl chr  X:124,890,142...124,917,171
JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 severity ISO protein:increased expression, alternative form:tumor:increased expression of soluble form, significantly correlated with VEGF expression
CTD Direct Evidence: marker/mechanism
protein:altered expression:tumor:positive expression improves survival rate after neoadjuvant chemotherapy, negative expression associated with poor prognosis
RGD
CTD
PMID:11857378 PMID:12910290 PMID:23146280 PMID:26124351 RGD:2289961 RGD:2289962 NCBI chr11:5,620,698...5,797,095
Ensembl chr11:5,620,700...5,795,264
JBrowse link
G FN1 fibronectin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24014025 NCBI chr15:117,658,158...117,737,145
Ensembl chr15:117,658,099...117,731,014
JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 7:98,449,508...98,451,971
Ensembl chr 7:98,449,349...98,455,554
JBrowse link
G FOSL1 FOS like 1, AP-1 transcription factor subunit ISO mRNA, protein:increased expression:breast RGD PMID:17254320 RGD:2293756 NCBI chr 2:6,430,158...6,436,173
Ensembl chr 2:6,430,153...6,436,173
JBrowse link
G FOXA1 forkhead box A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23001124 NCBI chr 7:62,471,233...62,479,638
Ensembl chr 7:62,471,228...62,479,223
JBrowse link
G FOXC1 forkhead box C1 disease_progression ISO DNA:increased methylation:promoter
DNA, mRNA:increased methylation, decreased expression:breast
RGD PMID:20056007 PMID:20338046 RGD:8662367 RGD:8662370 NCBI chr 7:837,088...840,593
Ensembl chr 7:837,171...838,805
JBrowse link
G FOXM1 forkhead box M1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20208560 NCBI chr 5:67,246,219...67,263,215
Ensembl chr 5:67,245,694...67,263,211
Ensembl chr 5:67,245,694...67,263,211
JBrowse link
G FOXP3 forkhead box P3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17570480 NCBI chr  X:43,303,777...43,328,164
Ensembl chr  X:43,303,782...43,328,735
JBrowse link
G FOXQ1 forkhead box Q1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27129776 NCBI chr 7:664,360...666,401
Ensembl chr 7:664,373...665,563
JBrowse link
G FST follistatin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr16:32,806,341...32,811,382
Ensembl chr16:32,805,874...32,811,421
JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23535733 NCBI chr 6:31,177,112...31,564,674
Ensembl chr 6:31,174,569...31,564,707
JBrowse link
G GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:25741868 PMID:28492532 PMID:29546405 NCBI chr 1:240,595,423...240,639,625
Ensembl chr 1:240,595,393...240,640,588
JBrowse link
G GALNT16 polypeptide N-acetylgalactosaminyltransferase 16 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 7:92,928,834...93,041,446
Ensembl chr 7:92,929,069...93,041,442
JBrowse link
G GDF10 growth differentiation factor 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chr14:88,522,956...88,534,719
Ensembl chr14:88,517,068...88,534,874
JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:25741868 PMID:28492532 NCBI chr 3:120,067,792...120,097,305
Ensembl chr 3:120,065,973...120,097,069
JBrowse link
G GJA1 gap junction protein alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29180066 NCBI chr 1:40,988,818...41,002,129
Ensembl chr 1:40,988,515...41,002,137
JBrowse link
G GNAI2 G protein subunit alpha i2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chr13:32,705,326...32,733,804
Ensembl chr13:32,705,321...32,733,363
JBrowse link
G GNAS GNAS complex locus ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:1594625 PMID:1944469 PMID:2549426 PMID:3720010 PMID:7739708 More... NCBI chr17:58,985,580...59,053,022
Ensembl chr17:58,998,981...59,053,021
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24440569 NCBI chr 3:711,427...715,982
Ensembl chr 3:712,160...715,982
JBrowse link
G GPI glucose-6-phosphate isomerase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr 6:44,038,374...44,069,331
Ensembl chr 6:43,933,759...44,069,330
JBrowse link
G GPNMB glycoprotein nmb ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 9:92,037,428...92,071,501
Ensembl chr 9:92,037,423...92,118,040
JBrowse link
G GPX1 glutathione peroxidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12810669 NCBI chr13:31,916,269...31,917,337
Ensembl chr13:31,914,932...31,917,335
JBrowse link
G GPX2 glutathione peroxidase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18056462 NCBI chr 7:89,007,636...89,011,620
Ensembl chr 7:89,007,369...89,011,620
JBrowse link
G GPX4 glutathione peroxidase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17634480 NCBI chr 2:77,321,568...77,323,931
Ensembl chr 2:77,320,464...77,323,886
JBrowse link
G GRB7 growth factor receptor bound protein 7 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:17426702 PMID:19075277 NCBI chr12:22,574,579...22,583,386
Ensembl chr12:22,574,584...22,584,760
JBrowse link
G GRIK2 glutamate ionotropic receptor kainate type subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 1:68,052,086...68,680,448
Ensembl chr 1:68,057,737...68,679,278
JBrowse link
G GUCY1A2 guanylate cyclase 1 soluble subunit alpha 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 9:62,101,581...62,510,803
Ensembl chr 9:62,101,613...62,499,581
JBrowse link
G GZMB granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) ISO CTD Direct Evidence: marker/mechanism CTD PMID:19446661 NCBI chr 7:74,705,499...74,708,781
Ensembl chr 7:74,705,409...74,727,437
JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356
JBrowse link
G H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29295867 NCBI chr 6:69,666,348...69,700,303
Ensembl chr 6:69,666,600...69,714,463
JBrowse link
G HADHB hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 3:112,712,894...112,753,121
Ensembl chr 3:112,704,023...112,753,086
JBrowse link
G HAPLN4 hyaluronan and proteoglycan link protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:58,617,210...58,627,785
Ensembl chr 2:58,617,205...58,634,464
JBrowse link
G HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:16397024 PMID:23220880 NCBI chr15:56,438,117...56,649,805
Ensembl chr15:56,438,107...56,649,796
JBrowse link
G HES1 hes family bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 PMID:21036696 NCBI chr13:131,135,970...131,137,865
Ensembl chr13:131,135,724...131,138,236
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 4:56,859,640...56,863,807
Ensembl chr 4:56,859,663...56,863,789
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 1:37,219,887...37,231,321
Ensembl chr 1:37,219,883...37,231,385
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 6:95,442,655...95,459,597
Ensembl chr 6:95,442,661...95,459,575
JBrowse link
G HHEX hematopoietically expressed homeobox ISO CTD Direct Evidence: marker/mechanism CTD PMID:16854221 NCBI chr14:104,194,424...104,199,684
Ensembl chr14:104,194,343...104,200,221
JBrowse link
G HIC1 HIC ZBTB transcriptional repressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20154726 NCBI chr12:48,167,861...48,172,540
Ensembl chr12:48,168,766...48,171,635
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha disease_progression ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:17245699 PMID:19064988 PMID:24349381 RGD:2293195 RGD:2306224 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,181...190,674,850
JBrowse link
G HMMR hyaluronan mediated motility receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:17922014 NCBI chr16:60,290,684...60,332,411
Ensembl chr16:60,290,000...60,332,371
JBrowse link
G HMOX1 heme oxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037
G HNRNPK heterogeneous nuclear ribonucleoprotein K ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr10:30,975,639...30,987,955
Ensembl chr10:30,975,693...30,987,940
JBrowse link
G HNRNPL heterogeneous nuclear ribonucleoprotein L ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 6:47,643,561...47,655,856
Ensembl chr 6:47,530,238...47,655,557
JBrowse link
G HNRNPR heterogeneous nuclear ribonucleoprotein R ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 6:81,203,067...81,239,823
Ensembl chr 6:81,184,833...81,239,135
JBrowse link
G HOXB13 homeobox B13 disease_progression ISO CTD Direct Evidence: marker/mechanism
DNA:hypermethylation
CTD
RGD
PMID:17453342 PMID:19250546 PMID:24239177 RGD:2314726 RGD:2314727 NCBI chr12:24,948,307...24,950,661
Ensembl chr12:24,947,728...24,950,637
JBrowse link
G HOXD11 homeobox D11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chr15:81,906,654...81,910,765
Ensembl chr15:81,908,460...81,910,281
JBrowse link
G HP haptoglobin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16597321 NCBI chr 6:14,980,382...14,985,245 JBrowse link
G HPSE heparanase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16391819 NCBI chr 8:135,082,199...135,120,887
Ensembl chr 8:135,081,151...135,120,889
JBrowse link
G HRAS HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast Neoplasms
CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast cancer
ClinVar
CTD
PMID:1904555 PMID:2105486 PMID:3510078 PMID:11150980 PMID:12165863 More... NCBI chr 2:299,662...302,539
Ensembl chr 2:299,660...302,501
JBrowse link
G HRG histidine rich glycoprotein ISO CTD Direct Evidence: marker/mechanism CTD PMID:19552798 NCBI chr13:124,505,305...124,516,387
Ensembl chr13:124,505,303...124,516,384
JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527
G HSPA5 heat shock protein family A (Hsp70) member 5 ISO protein:increased expression RGD PMID:20957756 RGD:5686342 NCBI chr 1:265,930,044...265,934,959
Ensembl chr 1:265,930,045...265,934,904
JBrowse link
G IBSP integrin binding sialoprotein ISO CTD Direct Evidence: marker/mechanism CTD PMID:24980816 NCBI chr 8:131,208,281...131,222,048
Ensembl chr 8:131,208,282...131,222,050
JBrowse link
G ICAM5 intercellular adhesion molecule 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 2:69,111,223...69,118,170
Ensembl chr 2:69,111,218...69,120,461
JBrowse link
G IDH1 isocitrate dehydrogenase (NADP(+)) 1 ISO ClinVar Annotator: match by term: Breast cancer
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast tumor
ClinVar PMID:18772396 PMID:19657110 PMID:19798509 PMID:19818334 PMID:20946881 More... NCBI chr15:111,341,153...111,362,330
Ensembl chr15:111,341,152...111,362,280
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chr17:9,245,283...9,260,140
Ensembl chr17:9,245,196...9,260,491
JBrowse link
G IFNB1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:18608205 NCBI chr 1:201,850,935...201,851,495
Ensembl chr 1:201,850,935...201,851,495
JBrowse link
G IFNG interferon gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:19446661 NCBI chr 5:32,477,906...32,482,670
Ensembl chr 5:32,477,848...32,482,752
JBrowse link
G IGBP1 immunoglobulin binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21339737 NCBI chr  X:56,173,773...56,206,121 JBrowse link
G IGF1 insulin like growth factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520698 PMID:18398872 NCBI chr 5:81,762,027...81,909,253
Ensembl chr 5:81,775,970...81,848,037
JBrowse link
G IGF1R insulin like growth factor 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21057462 NCBI chr 1:137,383,623...137,691,038
Ensembl chr 1:137,387,925...137,690,666
JBrowse link
G IGFBP5 insulin like growth factor binding protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20354179 NCBI chr15:118,861,816...118,877,787
Ensembl chr15:118,857,479...118,878,522
JBrowse link
G IGFBP7 insulin like growth factor binding protein 7 ISO CTD Direct Evidence: therapeutic CTD PMID:12592389 NCBI chr 8:56,283,089...56,357,822
Ensembl chr 8:56,279,894...56,357,835
JBrowse link
G IL10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29582634 NCBI chr 9:67,400,727...67,405,941
Ensembl chr 9:67,400,727...67,405,711
JBrowse link
G IL13 interleukin 13 treatment
susceptibility
ISO DNA:SNPs, haplotypes:promoter, exon:-1512A>C, -1055C>T, 2044G>A (human) RGD PMID:17438063 PMID:18989750 RGD:8549503 RGD:8549557 NCBI chr 2:134,972,099...134,976,672
Ensembl chr 2:134,972,623...134,975,093
JBrowse link
G IL17A interleukin 17A treatment ISO associated with Arthritis, Experimental RGD PMID:24674692 RGD:9068440 NCBI chr 7:46,013,584...46,017,161
Ensembl chr 7:46,013,584...46,017,153
JBrowse link
G IL24 interleukin 24 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:16298037 PMID:21671747 NCBI chr 9:67,525,246...67,532,407
Ensembl chr 9:67,525,557...67,530,738
JBrowse link
G IL6 interleukin 6 susceptibility ISO associated with obesity;DNA:polymorphism:promoter:-174G>C(human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:11426023 PMID:16298037 PMID:17516992 PMID:19435922 PMID:19446661 RGD:7829718 NCBI chr 9:91,506,421...91,510,830
Ensembl chr 9:91,506,340...91,511,263
JBrowse link
G ITSN2 intersectin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chr 3:114,363,319...114,508,447
Ensembl chr 3:114,363,528...114,508,445
JBrowse link
G JAG1 jagged canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr17:19,591,248...19,629,659
Ensembl chr17:19,591,252...19,630,085
JBrowse link
G JAG2 jagged canonical Notch ligand 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30619488 NCBI chr12:4,809,014...4,819,853
Ensembl chr12:4,808,691...4,818,062
JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 6:153,686,425...153,687,635 JBrowse link
G JUP junction plakoglobin severity
no_association
ISO protein:increased expression:tumor, cell membrane:significantly associated with relapse-free and overall survival (p=0.029 and 0.020, respectively)
Protein::tumor:normal expression in both T1 and T2 tumors
DNA:loss of heterozygosity:tumor:in individuals carrying the BRCA1 predisposition
RGD PMID:7604000 PMID:11276001 PMID:17008277 RGD:2291873 RGD:2291881 RGD:2291883 NCBI chr12:20,902,395...20,931,208
Ensembl chr12:20,901,396...20,931,211
JBrowse link
G KAT6A lysine acetyltransferase 6A severity ISO mRNA:increased expression:breast (human) RGD PMID:25220592 RGD:9590335 NCBI chr17:11,002,818...11,109,974 JBrowse link
G KCNH1 potassium voltage-gated channel subfamily H member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520698 NCBI chr 9:131,960,566...132,336,029 JBrowse link
G KDM4C lysine demethylase 4C severity ISO human gene in a mouse model
mRNA:increased expression:breast (human)
RGD PMID:19784073 PMID:23129632 RGD:9587479 RGD:9587482 NCBI chr 1:215,071,335...215,507,778
Ensembl chr 1:215,071,334...215,507,800
JBrowse link
G KDM5B lysine demethylase 5B severity ISO mRNA:increased expression:breast (human) RGD PMID:10336460 RGD:9587743 NCBI chr10:24,739,115...24,831,537
Ensembl chr10:24,736,834...24,831,447
JBrowse link
G KDR kinase insert domain receptor treatment ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:14511401 PMID:20135347 RGD:8551844 NCBI chr 8:41,809,116...41,856,379
Ensembl chr 8:41,809,116...41,856,339
JBrowse link
G KDSR 3-ketodihydrosphingosine reductase disease_progression ISO CTD Direct Evidence: marker/mechanism
DNA:polymorphism:promoter:-938C>A
protein:increased expression:breast
associated with Papillomavirus Infections;protein:increased expression:breast
CTD
RGD
PMID:12517783 PMID:16954440 PMID:17908970 PMID:18427947 PMID:18430249 More... RGD:2292908 RGD:2292909 RGD:2293016 NCBI chr 1:158,337,403...158,518,214
Ensembl chr 1:158,288,544...158,518,879
JBrowse link
G KISS1 KiSS-1 metastasis suppressor severity
disease_progression
ISO mRNA:increased expression:tumor:high levels of both KISS1 and KISS1R in ERalpha+ tumors treated with tamoxifen associated with shorter relapse-free survival
mRNA, protein:increased expression:tumor:higher in tumor vs normal tissue, significantly higher in node-positive vs node-negative (p=0.02)
RGD PMID:16320113 PMID:17914099 RGD:2292123 RGD:2292135 NCBI chr 9:64,834,822...64,841,071
Ensembl chr 9:64,834,820...64,853,610
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase severity
disease_progression
ISO protein:decreased expression:tumor:mean immunoreactive score = 5.90 in normal breast, 0.90 in malignant tissue (p=0.001)
protein:increased expression:tumor:significantly increased vs fibroadenoma (p=0.035)
protein:expression:tumor:expression correlated with poor overall survival (p=0.051) and with high grade (p=0.019)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:14669790 PMID:17848740 PMID:17867595 PMID:20941507 PMID:21388062 RGD:12910741 RGD:2292423 RGD:2292424 RGD:2292425 NCBI chr 8:41,402,334...41,492,306
Ensembl chr 8:41,402,043...41,493,735
JBrowse link
G KLHDC10 kelch domain containing 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr18:18,667,377...18,723,090
Ensembl chr18:18,667,364...18,723,067
JBrowse link
G KLHDC7A kelch domain containing 7A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 6:77,022,168...77,030,776
Ensembl chr 6:77,023,865...77,027,234
JBrowse link
G KLK10 kallikrein related peptidase 10 severity ISO CTD Direct Evidence: marker/mechanism
DNA:hypermethylation:exon (human)
RGD
CTD
PMID:12087468 PMID:16800735 PMID:17585892 PMID:19150938 RGD:2314845 RGD:2314847 RGD:2314850 NCBI chr 6:55,673,508...55,677,725
Ensembl chr 6:55,673,204...55,678,329
JBrowse link
G KMT2D lysine methyltransferase 2D ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chr 5:15,049,827...15,091,622 JBrowse link
G KRAS KRAS proto-oncogene, GTPase ISO breast adenocarcinoma cell line, OMIM:114480 DNA:point_mutation:CDS:amino acid G13D
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:3627975 RGD:1600466 NCBI chr 5:48,508,774...48,546,260
Ensembl chr 5:48,508,790...48,549,346
JBrowse link
G KRT18 keratin 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20061804 PMID:25330770 NCBI chr 5:18,217,686...18,221,432
Ensembl chr 5:18,217,691...18,222,833
JBrowse link
G KRT5 keratin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chr 5:17,862,047...17,868,397
Ensembl chr 5:17,780,928...17,868,402
JBrowse link
G KRT8 keratin 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20061804 NCBI chr 5:18,172,423...18,180,277
Ensembl chr 5:18,170,354...18,180,404
JBrowse link
G L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 1:33,198,295...33,319,477
Ensembl chr 1:33,198,301...33,319,367
JBrowse link
G LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chr 4:109,722,664...109,728,278
Ensembl chr 4:109,721,910...109,728,257
JBrowse link
G LBX1 ladybird homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19651985 NCBI chr14:112,283,479...112,287,631
Ensembl chr14:112,284,261...112,286,216
JBrowse link
G LDHB lactate dehydrogenase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23437403 NCBI chr 5:51,810,932...51,831,218 JBrowse link
G LEF1 lymphoid enhancer binding factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 8:113,824,511...113,944,078
Ensembl chr 8:113,824,547...113,944,078
JBrowse link
G LEP leptin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21353530 NCBI chr18:20,106,867...20,124,071
Ensembl chr18:20,106,868...20,123,447
JBrowse link
G LEPR leptin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21353530 NCBI chr 6:146,802,297...146,896,152
Ensembl chr 6:146,798,979...146,896,108
JBrowse link
G LGR6 leucine rich repeat containing G protein-coupled receptor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:23535733 NCBI chr10:24,358,946...24,454,430
Ensembl chr10:24,359,874...24,454,431
JBrowse link
G LIMD2 LIM domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chr12:15,223,798...15,229,634
Ensembl chr12:15,224,289...15,227,700
JBrowse link
G LLGL1 LLGL scribble cell polarity complex component 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr12:60,487,337...60,500,423
Ensembl chr12:60,487,341...60,500,451
JBrowse link
G LLGL2 LLGL scribble cell polarity complex component 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chr12:5,809,066...5,846,165
Ensembl chr12:5,809,068...5,846,182
JBrowse link
G LOC100516084 cytoplasmic tRNA 2-thiolation protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chr 6:58,388,646...58,396,509 JBrowse link
G LOC100522201 histone H2AX ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 PMID:21463514 NCBI chr 9:46,308,824...46,310,494
Ensembl chr 9:46,309,653...46,310,084
JBrowse link
G LOC100524391 putative methyltransferase NSUN6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chr10:44,884,179...44,958,024
Ensembl chr10:44,882,449...44,976,445
JBrowse link
G LOC100622859 baculoviral IAP repeat-containing protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chr 9:33,041,592...33,062,865
Ensembl chr 9:33,003,276...33,063,420
JBrowse link
G LOC100737977 tumor necrosis factor receptor superfamily member 10B-like disease_progression ISO protein:increased expression:breast RGD PMID:16033835 RGD:2290494 NCBI chr14:7,344,788...7,371,086 JBrowse link
G LOC100739508 glutathione S-transferase P-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:25322848 NCBI chr 2:5,005,498...5,009,247 JBrowse link
G LOC110258578 interleukin-1 beta-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 PMID:28212736
G LOXL2 lysyl oxidase like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19330836 PMID:24014025 NCBI chr14:7,435,861...7,540,699
Ensembl chr14:7,435,863...7,540,704
JBrowse link
G LPAR1 lysophosphatidic acid receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 1:251,811,583...251,979,828
Ensembl chr 1:251,811,584...251,979,159
JBrowse link
G LRRC3B leucine rich repeat containing 3B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr13:13,327,030...13,420,216
Ensembl chr13:13,327,220...13,420,223
JBrowse link
G LRRC56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast cancer
ClinVar PMID:1904555 PMID:2105486 PMID:3510078 PMID:11150980 PMID:12727991 More... NCBI chr 2:303,836...323,701
Ensembl chr 2:304,429...323,700
JBrowse link
G LSP1 lymphocyte specific protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 PMID:20453838 NCBI chr 2:1,261,957...1,295,891
Ensembl chr 2:1,262,081...1,295,891
JBrowse link
G MACIR macrophage immunometabolism regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 2:108,733,347...108,753,276
Ensembl chr 2:108,733,305...108,753,275
JBrowse link
G MAD1L1 mitotic arrest deficient 1 like 1 ISO RGD PMID:11423979 RGD:1599865 NCBI chr 3:1,236,066...1,559,346
Ensembl chr 3:1,236,066...1,559,041
JBrowse link
G MAL mal, T cell differentiation protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:19208741 NCBI chr 3:46,223,610...46,242,306
Ensembl chr 3:46,181,555...46,242,047
JBrowse link
G MAN2C1 mannosidase alpha class 2C member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 7:58,247,264...58,261,204
Ensembl chr 7:58,248,384...58,261,203
JBrowse link
G MAP2K4 mitogen-activated protein kinase kinase 4 susceptibility ISO DNA:SNP, haplotype RGD PMID:19404734 RGD:7495825 NCBI chr12:56,402,029...56,516,217
Ensembl chr12:56,402,075...56,516,240
JBrowse link
G MAP2K7 mitogen-activated protein kinase kinase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21317887 NCBI chr 2:71,299,010...71,308,432
Ensembl chr 2:71,298,322...71,308,165
JBrowse link
G MAP3K1 mitogen-activated protein kinase kinase kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 NCBI chr16:35,872,301...35,947,097
Ensembl chr16:35,871,799...35,946,987
JBrowse link
G MCPH1 microcephalin 1 severity ISO protein:decreased expression:breast (human) RGD PMID:20632086 RGD:9589027 NCBI chr15:37,455,186...37,674,971
Ensembl chr15:37,455,526...37,673,663
JBrowse link
G MDM2 MDM2 proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chr 5:33,105,717...33,137,602
Ensembl chr 5:33,086,994...33,178,089
JBrowse link
G MDM4 MDM4 regulator of p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23535733 NCBI chr 9:65,175,488...65,219,747
Ensembl chr 9:65,175,377...65,223,132
JBrowse link
G MECOM MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:23770046 NCBI chr13:107,753,207...108,336,136
Ensembl chr13:107,754,480...108,335,503
JBrowse link
G MED12 mediator complex subunit 12 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:25038752 PMID:26437033 PMID:26619011 NCBI chr  X:57,150,884...57,174,367
Ensembl chr  X:57,150,578...57,175,352
JBrowse link
G MED28 mediator complex subunit 28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21942447 NCBI chr 8:12,624,096...12,633,251
Ensembl chr 8:12,624,109...12,635,334
JBrowse link
G MEIS1 Meis homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chr 3:75,485,024...75,625,855
Ensembl chr 3:75,485,022...75,625,040
JBrowse link
G METTL6 methyltransferase 6, methylcytidine ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr13:2,638,972...2,654,845
Ensembl chr13:2,638,384...2,654,795
JBrowse link
G MFGE8 milk fat globule EGF and factor V/VIII domain containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:21127199 NCBI chr 7:54,539,970...54,554,885
Ensembl chr 7:54,539,614...54,571,637
JBrowse link
G MIF macrophage migration inhibitory factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19602265 NCBI chr14:49,840,303...49,841,063
Ensembl chr14:49,840,305...49,862,317
JBrowse link
G MIR101-1 microRNA mir-101-1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24475105 NCBI chr 1:217,152,783...217,152,873
Ensembl chr 1:217,152,783...217,152,873
JBrowse link
G MIR10A microRNA mir-10a ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr12:24,833,644...24,833,723
Ensembl chr12:24,833,627...24,833,730
JBrowse link
G MIR10B microRNA mir-10b ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr15:81,951,644...81,951,723
Ensembl chr15:81,951,636...81,951,736
JBrowse link
G MIR126 microRNA mir-126 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276
G MIR127 microRNA mir-127 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 7:121,709,636...121,709,715
Ensembl chr 7:121,709,640...121,709,720
JBrowse link
G MIR132 microRNA mir-132 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr12:48,162,625...48,162,702
Ensembl chr12:48,162,614...48,162,714
JBrowse link
G MIR145 microRNA mir-145 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21463514 NCBI chr 2:150,580,126...150,580,211
Ensembl chr 2:150,580,126...150,580,211
JBrowse link
G MIR152 microRNA mir-152 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28544374 NCBI chr12:24,292,249...24,292,328
Ensembl chr12:24,292,251...24,292,336
JBrowse link
G MIR205 microRNA mir-205 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 9:133,517,078...133,517,146
Ensembl chr 9:133,517,078...133,517,146
JBrowse link
G MIR206 microRNA mir-206 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 7:45,976,293...45,976,372
Ensembl chr 7:45,976,293...45,976,372
JBrowse link
G MIR214 microRNA mir-214 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 9:114,527,992...114,528,101
Ensembl chr 9:114,527,990...114,528,101
JBrowse link
G MIR221 microRNA mir-221 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr  X:40,571,068...40,571,137
Ensembl chr  X:40,571,068...40,571,137
JBrowse link
G MIR222 microRNA mir-222 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr  X:40,571,808...40,571,887
Ensembl chr  X:40,571,808...40,571,887
JBrowse link
G MIR29A microRNA mir-29a ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr18:18,040,032...18,040,117
Ensembl chr18:18,040,032...18,040,118
JBrowse link
G MIR342 microRNA mir-342 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 7:121,021,761...121,021,840
Ensembl chr 7:121,021,761...121,021,840
JBrowse link
G MIR345-1 microRNA mir-345-1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 7:121,193,720...121,193,799
Ensembl chr 7:121,193,716...121,193,799
JBrowse link
G MIR489 microRNA mir-489 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20099276 NCBI chr 9:73,330,690...73,330,770
Ensembl chr 9:73,330,690...73,330,770
JBrowse link
G MKI67 marker of proliferation Ki-67 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15706428 PMID:18768436 PMID:19436038 NCBI chr14:137,266,622...137,296,312 JBrowse link
G MME membrane metalloendopeptidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chr13:95,018,395...95,122,977
Ensembl chr13:95,019,081...95,126,045
JBrowse link
G MMP1 matrix metallopeptidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23548910 NCBI chr 9:33,411,738...33,420,205
Ensembl chr 9:33,411,065...33,454,000
JBrowse link
G MMP13 matrix metallopeptidase 13 disease_progression ISO protein:increased expression:tumor:positive correlation with lymph node metastases (p<0.001), negative correlation with overall survival (p=0.0008) RGD PMID:18373849 RGD:2293603 NCBI chr 9:33,549,003...33,616,700
Ensembl chr 9:33,549,003...33,568,076
JBrowse link
G MMP14 matrix metallopeptidase 14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24014025 NCBI chr 7:76,174,502...76,185,931
Ensembl chr 7:76,174,500...76,185,923
JBrowse link
G MMP2 matrix metallopeptidase 2 disease_progression ISO CTD Direct Evidence: marker/mechanism
DNA:SNP:promoter:-1306C>T (human)
protein:increased expression:breast
protein:decreased expression:serum
CTD
RGD
PMID:15538048 PMID:16949931 PMID:17642161 PMID:17851253 PMID:18398872 More... RGD:2290392 RGD:2290401 RGD:8547818 RGD:8655999 NCBI chr 6:30,059,247...30,087,031
Ensembl chr 6:30,058,594...30,086,982
JBrowse link
G MMP9 matrix metallopeptidase 9 disease_progression
no_association
ISO protein:increased expression:serum
DNA:SNPs, haplotype:rs17577, rs3787268 (human)
DNA:SNPs:promoter, CDS:rs3918241, rs2274756 (p.R668Q) (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:15538048 PMID:18172859 PMID:19617202 PMID:20725776 PMID:21151179 More... RGD:2290343 RGD:8547818 RGD:8547827 RGD:8547837 RGD:8547839 RGD:8547893 NCBI chr17:48,179,690...48,186,782
Ensembl chr17:48,175,056...48,188,264
JBrowse link
G MRPL13 mitochondrial ribosomal protein L13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:18,608,919...18,671,523
Ensembl chr 4:18,608,883...18,671,519
JBrowse link
G MRPL19 mitochondrial ribosomal protein L19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 3:67,604,613...67,611,323
Ensembl chr 3:67,578,565...67,611,362
JBrowse link
G MRPL9 mitochondrial ribosomal protein L9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:97,448,160...97,462,523
Ensembl chr 4:97,448,169...97,474,061
JBrowse link
G MRPS22 mitochondrial ribosomal protein S22 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr13:80,006,656...80,232,107
Ensembl chr13:79,981,676...80,232,774
JBrowse link
G MRPS23 mitochondrial ribosomal protein S23 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr12:34,123,679...34,129,574
Ensembl chr12:34,016,994...34,132,840
JBrowse link
G MRPS28 mitochondrial ribosomal protein S28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:56,607,666...56,706,918
Ensembl chr 4:56,607,714...56,703,516
JBrowse link
G MRPS7 mitochondrial ribosomal protein S7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr12:6,052,109...6,055,669
Ensembl chr12:6,052,063...6,055,668
JBrowse link
G MST1 macrophage stimulating 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chr13:32,214,934...32,220,045
Ensembl chr13:32,214,937...32,219,902
JBrowse link
G MT3 metallothionein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21170156 NCBI chr 6:18,634,735...18,636,134
Ensembl chr 6:18,634,721...18,789,137
JBrowse link
G MTDH metadherin ISO CTD Direct Evidence: marker/mechanism CTD PMID:19111877 NCBI chr 4:39,052,895...39,113,380
Ensembl chr 4:39,051,541...39,113,385
JBrowse link
G MTHFR methylenetetrahydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16777985 PMID:17595805 PMID:28114181 NCBI chr 6:71,863,637...71,882,118
Ensembl chr 6:71,863,636...71,881,820
JBrowse link
G MTOR mechanistic target of rapamycin kinase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:22729223 PMID:24631838 PMID:25599672 PMID:25741868 PMID:25799227 More... NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888
JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17595805 NCBI chr14:54,546,978...54,652,780
Ensembl chr14:54,546,981...54,652,759
JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor treatment ISO mRNA:increased expression:mammary gland (mouse) RGD PMID:20820192 PMID:22439659 RGD:7207428 RGD:7241009 NCBI chr 4:12,455,141...12,460,360
Ensembl chr 4:12,455,119...12,461,078
JBrowse link
G MYH9 myosin heavy chain 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chr 5:11,365,603...11,456,475 JBrowse link
G NCOA1 nuclear receptor coactivator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chr 3:113,997,214...114,251,080
Ensembl chr 3:113,997,236...114,251,078
JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chr 4:64,888,029...65,245,757
Ensembl chr 4:64,954,120...65,246,572
JBrowse link
G NCOA3 nuclear receptor coactivator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chr17:49,528,275...49,660,471
Ensembl chr17:49,528,164...49,663,203
JBrowse link
G NCOR1 nuclear receptor corepressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19781322 NCBI chr12:59,256,868...59,392,564 JBrowse link
G NDRG1 N-myc downstream regulated 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15341671 NCBI chr 4:8,014,445...8,069,335
Ensembl chr 4:8,014,446...8,069,333
JBrowse link
G NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 2:15,031,147...15,036,880
Ensembl chr 2:15,031,149...15,036,880
JBrowse link
G NECTIN2 nectin cell adhesion molecule 2 ISO CTD Direct Evidence: therapeutic CTD PMID:23758976 NCBI chr 6:51,317,386...51,358,665 JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32621833 NCBI chr15:82,967,485...83,146,185
Ensembl chr15:82,973,648...83,146,183
JBrowse link
G NFKBIA NFKB inhibitor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 7:64,508,119...64,510,754
Ensembl chr 7:64,508,016...64,558,057
JBrowse link
G NISCH nischarin ISO CTD Direct Evidence: marker/mechanism CTD PMID:29912916 NCBI chr13:34,595,788...34,630,306
Ensembl chr13:34,595,891...34,630,303
JBrowse link
G NMBR neuromedin B receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:24349381 NCBI chr 1:22,972,049...22,989,188
Ensembl chr 1:22,972,287...22,988,179
JBrowse link
G NOP9 NOP9 nucleolar protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 7:74,985,748...74,992,108
Ensembl chr 7:74,985,753...74,992,946
JBrowse link
G NOS2 nitric oxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15631943 NCBI chr12:44,174,944...44,219,875
Ensembl chr12:44,174,944...44,327,111
JBrowse link
G NOS3 nitric oxide synthase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15375496 PMID:19671875 NCBI chr18:6,209,218...6,228,912
Ensembl chr18:6,209,156...6,228,938
JBrowse link
G NOTCH1 notch receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 PMID:21679465
G NOTCH2 notch receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 4:100,951,522...101,152,348
Ensembl chr 4:100,951,507...101,150,198
JBrowse link
G NOTCH3 notch receptor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chr 2:62,364,507...62,402,348
Ensembl chr 2:62,364,501...62,402,344
JBrowse link
G NOTCH4 notch receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 PMID:21679465 NCBI chr 7:24,231,293...24,256,281
Ensembl chr 7:24,231,293...24,256,281
JBrowse link
G NQO1 NAD(P)H quinone dehydrogenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18511948 NCBI chr 6:17,292,962...17,302,593
Ensembl chr 6:17,292,769...17,302,590
JBrowse link
G NQO2 N-ribosyldihydronicotinamide:quinone reductase 2 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr 7:1,792,745...1,805,916
Ensembl chr 7:1,792,887...1,806,302
JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chr 2:100,447,661...100,457,510
Ensembl chr 2:100,447,847...100,457,904
JBrowse link
G NR2F6 nuclear receptor subfamily 2 group F member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chr 2:60,426,116...60,438,178
Ensembl chr 2:60,426,618...60,438,177
JBrowse link
G NRCAM neuronal cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 9:107,928,866...108,248,018
Ensembl chr 9:107,928,867...108,247,680
JBrowse link
G NRG1 neuregulin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19617202 NCBI chr15:52,625,550...53,688,003
Ensembl chr15:52,627,334...53,688,332
JBrowse link
G NRIP1 nuclear receptor interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22267197 NCBI chr13:179,822,731...179,916,226
Ensembl chr13:179,824,862...179,915,177
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24874954 NCBI chr 8:938,832...1,018,032
Ensembl chr 8:963,884...1,018,025
JBrowse link
G NUDT17 nudix hydrolase 17 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 4:99,472,347...99,477,953
Ensembl chr 4:99,472,350...99,477,932
JBrowse link
G NUDT2 nudix hydrolase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20533549 NCBI chr10:32,450,986...32,466,893
Ensembl chr10:32,451,064...32,466,839
JBrowse link
G OCLN occludin ISO CTD Direct Evidence: marker/mechanism CTD PMID:17459053 PMID:24014025 NCBI chr16:47,600,175...47,652,435
Ensembl chr16:47,600,498...47,654,033
JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase severity ISO RGD PMID:24214978 RGD:9590192 NCBI chr  X:57,521,091...57,558,467
Ensembl chr  X:57,521,097...57,558,519
JBrowse link
G P14ARF p14ARF protein susceptibility ISO protein:decreased expression:breast
DNA:missense mutation: :p.A148T
DNA:hypermethylation:promoter
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:8686738 PMID:15879498 PMID:20948315 PMID:23712779 RGD:2289688 RGD:2289690 RGD:8552384 NCBI chr 1:200,774,496...200,799,149
Ensembl chr 1:200,774,496...200,798,854
JBrowse link
G PABPC1 poly(A) binding protein cytoplasmic 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:36,137,644...36,228,075
Ensembl chr 4:36,137,639...36,227,690
JBrowse link
G PAEP progestagen associated endometrial protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:22296396
G PAK1 p21 (RAC1) activated kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20179234 NCBI chr 9:11,830,095...11,973,074
Ensembl chr 9:11,830,093...12,113,670
JBrowse link
G PAK2 p21 (RAC1) activated kinase 2 ISO RGD PMID:22886747 RGD:7775026 NCBI chr13:133,276,122...133,383,506
Ensembl chr13:133,283,300...133,496,071
JBrowse link
G PALB2 partner and localizer of BRCA2 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:17200668 PMID:24033266 PMID:24136930 PMID:24448499 PMID:24556926 More... NCBI chr 3:22,586,881...22,612,837
Ensembl chr 3:22,586,856...22,612,835
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20941507 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G PCNA proliferating cell nuclear antigen disease_progression ISO RGD PMID:8098267 RGD:2315013 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G PDE2A phosphodiesterase 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:12972520 NCBI chr 9:7,136,637...7,227,966
Ensembl chr 9:7,136,644...7,227,964
JBrowse link
G PDGFA platelet derived growth factor subunit A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 3:296,399...322,967
Ensembl chr 3:303,311...323,036
JBrowse link
G PDGFRB platelet derived growth factor receptor beta ISO RGD PMID:17050049 RGD:2292176 NCBI chr 2:151,155,753...151,192,818
Ensembl chr 2:151,155,754...151,192,647
JBrowse link
G PDPK1 3-phosphoinositide dependent protein kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24739482 NCBI chr 3:39,429,928...39,512,623
Ensembl chr 3:39,429,931...39,532,583
JBrowse link
G PDZK1 PDZ domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chr 4:99,625,085...99,657,170
Ensembl chr 4:99,605,080...99,657,191
JBrowse link
G PECAM1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:21890879 RGD:6771361 NCBI chr12:14,667,643...14,723,296
Ensembl chr12:14,582,481...14,723,336
JBrowse link
G PER3 period circadian regulator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20625127 NCBI chr 6:68,487,634...68,548,718 JBrowse link
G PGR progesterone receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19436038 PMID:21501481 NCBI chr 9:32,035,684...32,129,776
Ensembl chr 9:32,035,684...32,129,221
JBrowse link
G PHB prohibitin ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr12:25,596,520...25,609,693
Ensembl chr12:25,584,443...25,609,656
JBrowse link
G PHGDH phosphoglycerate dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21804546 NCBI chr 4:101,445,977...101,478,144
Ensembl chr 4:101,408,308...101,478,144
JBrowse link
G PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast cancer
CTD
ClinVar
PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chr13:117,193,935...117,282,151
Ensembl chr13:117,180,544...117,277,232
JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 ISO mRNA:increased expression:mammary tumor (mouse) RGD PMID:17699716 RGD:4108502 NCBI chr16:46,434,757...46,523,626
Ensembl chr16:46,434,873...46,523,609
JBrowse link
G PIM1 Pim-1 proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 7:32,788,246...32,793,882
Ensembl chr 7:32,788,005...32,793,880
JBrowse link
G PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19671742 PMID:19681904 NCBI chr 2:68,715,898...68,729,471
Ensembl chr 2:68,715,880...68,729,469
JBrowse link
G PLA2G4A phospholipase A2 group IVA ISO CTD Direct Evidence: marker/mechanism CTD PMID:21119660 NCBI chr 9:127,853,581...128,164,825
Ensembl chr 9:127,859,051...128,162,636
JBrowse link
G PLAAT3 phospholipase A and acyltransferase 3 ISO mRNA,protein:decreased expression:tumor:mRNA decreased and protein undetectable in HRAS transgene-induced tumors RGD PMID:9049257 RGD:2290001 NCBI chr 2:8,410,540...8,444,604
Ensembl chr 2:8,408,512...8,444,604
JBrowse link
G PLEKHD1 pleckstrin homology and coiled-coil domain containing D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 7:93,152,946...93,187,730
Ensembl chr 7:93,152,942...93,187,599
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:23709753 PMID:24033266 PMID:25741868 PMID:27146957 PMID:28466842 More... NCBI chr 3:5,118,002...5,145,634
Ensembl chr 3:5,113,230...5,145,634
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:26619011 PMID:28492532 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
G PPARGC1B PPARG coactivator 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:20961995 NCBI chr 2:150,823,338...150,924,871
Ensembl chr 2:150,823,373...150,919,378
JBrowse link
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr12:37,485,601...37,536,159
Ensembl chr12:37,485,586...37,536,146
JBrowse link
G PPP1R12B protein phosphatase 1 regulatory subunit 12B ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chr10:24,463,900...24,637,361
Ensembl chr10:24,465,041...24,637,360
JBrowse link
G PPP2R1A protein phosphatase 2 scaffold subunit Aalpha ISO ClinVar Annotator: match by term: Breast cancer
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast tumor
ClinVar PMID:25741868 PMID:26168268 PMID:26619011 NCBI chr 6:57,929,520...57,964,948
Ensembl chr 6:57,921,328...57,964,994
JBrowse link
G PRC1 protein regulator of cytokinesis 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chr 7:55,869,749...55,900,640
Ensembl chr 7:55,840,723...56,045,582
JBrowse link
G PRKCA protein kinase C alpha ISO protein:decreased expression:breast RGD PMID:9474241 PMID:15454252 PMID:17965220 RGD:2292446 RGD:2292458 RGD:2292463 NCBI chr12:12,882,287...13,268,647
Ensembl chr12:12,882,064...13,263,554
JBrowse link
G PRSS46 protease, serine 46 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr13:29,640,448...29,665,549 JBrowse link
G PTEN phosphatase and tensin homolog ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast tumor
CTD
ClinVar
PMID:9140396 PMID:9241266 PMID:9259288 PMID:9399897 PMID:9467011 More... NCBI chr14:99,929,590...100,021,619 JBrowse link
G PTGES prostaglandin E synthase ISO protein:increased expression:breast RGD PMID:16353170 RGD:2300083 NCBI chr 1:269,911,785...269,924,481
Ensembl chr 1:269,911,789...269,924,462
JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18488158 NCBI chr 1:262,456,106...262,482,159
Ensembl chr 1:262,456,155...262,483,035
JBrowse link
G PTGS2 prostaglandin-endoperoxide synthase 2 susceptibility ISO CTD Direct Evidence: marker/mechanism
mRNA:decreased expression:breast
mRNA, protein:increased expression:breast
CTD
RGD
PMID:14605950 PMID:16127422 PMID:16870006 PMID:17285134 PMID:18334709 More... RGD:2300120 RGD:2300129 RGD:2300210 NCBI chr 9:127,850,164...127,858,866
Ensembl chr 9:127,850,013...127,858,884
JBrowse link
G PTHLH parathyroid hormone like hormone ISO CTD Direct Evidence: marker/mechanism CTD PMID:22267197 NCBI chr 5:45,750,968...45,763,421
Ensembl chr 5:45,751,292...45,763,415
JBrowse link
G PTK2 protein tyrosine kinase 2 ISO protein:increased expression:breast
DNA:amplification
RGD PMID:16136050 PMID:16457699 RGD:2292558 RGD:2292559 NCBI chr 4:2,656,606...2,896,060
Ensembl chr 4:2,656,613...2,896,060
JBrowse link
G PTPRD protein tyrosine phosphatase receptor type D ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 1:211,832,409...214,013,013
Ensembl chr 1:213,482,964...214,009,895
JBrowse link
G RAD50 RAD50 double strand break repair protein treatment ISO human gene in a rat model
DNA:deletion, splicing error::687delT, increased frequency in Finnish patients (8/317, p=0.008), possibly a founder mutation
RGD PMID:11373271 PMID:16474176 RGD:2300220 RGD:9831192 NCBI chr 2:134,844,460...134,939,188 JBrowse link
G RAD51 RAD51 recombinase ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD51B RAD51 paralog B ISO CTD Direct Evidence: marker/mechanism CTD PMID:19330030 NCBI chr 7:91,592,413...92,301,383
Ensembl chr 7:91,592,424...92,345,294
JBrowse link
G RAD51C RAD51 paralog C ISO CTD Direct Evidence: marker/mechanism CTD PMID:20400964 PMID:28825726 NCBI chr12:34,975,949...35,018,112
Ensembl chr12:34,975,957...35,019,018
JBrowse link
G RAD54L RAD54 like ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776
JBrowse link
G RAF1 Raf-1 proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: therapeutic CTD PMID:12432273 NCBI chr13:68,581,128...68,657,911
Ensembl chr13:68,580,812...68,657,829
JBrowse link
G RALYL RALY RNA binding protein-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:51,785,372...52,559,659
Ensembl chr 4:51,785,375...52,557,785
JBrowse link
G RARA retinoic acid receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chr12:22,047,449...22,085,759
Ensembl chr12:22,047,442...22,085,674
JBrowse link
G RARB retinoic acid receptor beta ISO CTD Direct Evidence: therapeutic CTD PMID:16255778 NCBI chr13:12,336,387...12,507,688 JBrowse link
G RB1 RB transcriptional corepressor 1 disease_progression ISO allelic loss
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:1567185 PMID:11108660 PMID:14672398 PMID:19234134 PMID:20948315 RGD:2291991 RGD:9698451 NCBI chr11:19,186,754...19,317,642
Ensembl chr11:19,186,759...19,317,690
JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,338...77,649,550
JBrowse link
G RBM3 RNA binding motif protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19734850 NCBI chr  X:42,704,019...42,707,587
Ensembl chr  X:42,704,026...42,707,584
JBrowse link
G RCCD1 RCC1 domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 7:53,546,666...53,557,718
Ensembl chr 7:53,531,274...53,558,128
JBrowse link
G RECQL RecQ like helicase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25915596 NCBI chr 5:51,953,460...51,995,619
Ensembl chr 5:51,953,184...52,003,742
JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16322341 PMID:16728586 PMID:20154269 RGD:2298762 RGD:2298763 NCBI chr 2:6,594,869...6,602,684
Ensembl chr 2:6,593,969...6,603,471
JBrowse link
G REPS2 RALBP1 associated Eps domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chr  X:13,413,362...13,658,907
Ensembl chr  X:13,412,128...13,658,902
JBrowse link
G RGS2 regulator of G protein signaling 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr10:936,836...940,083
Ensembl chr10:936,789...940,098
JBrowse link
G RHOA ras homolog family member A ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:26619011 NCBI chr13:31,918,484...31,991,207
Ensembl chr13:31,918,836...32,003,722
JBrowse link
G RIBC2 RIB43A domain with coiled-coils 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 5:3,966,339...3,976,024
Ensembl chr 5:3,966,440...3,975,995
JBrowse link
G RIC8A RIC8 guanine nucleotide exchange factor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:32,135...37,682
Ensembl chr 2:32,215...39,360
JBrowse link
G RMND1 required for meiotic nuclear division 1 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 1:14,795,632...14,852,026
Ensembl chr 1:14,795,691...14,855,069
JBrowse link
G RNF115 ring finger protein 115 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chr 4:99,493,172...99,577,946
Ensembl chr 4:99,493,481...99,573,564
JBrowse link
G RNF182 ring finger protein 182 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 7:10,191,706...10,257,769
Ensembl chr 7:10,201,802...10,259,376
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:20140017 NCBI chr 6:106,163,899...106,314,998
Ensembl chr 6:106,163,903...106,314,944
JBrowse link
G ROR1 receptor tyrosine kinase like orphan receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chr 6:148,314,575...148,834,659
Ensembl chr 6:148,315,283...148,761,721
JBrowse link
G RPL23A ribosomal protein L23a ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr12:44,956,851...44,960,737
Ensembl chr12:44,957,125...44,960,736
JBrowse link
G RPL31 ribosomal protein L31 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 3:53,289,993...53,295,387
Ensembl chr 3:53,281,339...53,491,733
JBrowse link
G RPLP2 ribosomal protein lateral stalk subunit P2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:507,891...509,818
Ensembl chr 2:435,122...509,818
JBrowse link
G RPS4X ribosomal protein S4 X-linked ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr  X:58,149,302...58,155,179
Ensembl chr  X:58,149,308...58,155,193
JBrowse link
G RPS6 ribosomal protein S6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 NCBI chr 1:203,444,360...203,447,643
Ensembl chr 1:203,444,450...203,451,468
JBrowse link
G RPS6KB2 ribosomal protein S6 kinase B2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20953835 NCBI chr 2:5,089,466...5,095,591
Ensembl chr 2:5,089,469...5,095,576
JBrowse link
G RPS7 ribosomal protein S7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 3:131,258,709...131,263,285
Ensembl chr 3:131,258,713...131,342,877
JBrowse link
G RPS8 ribosomal protein S8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 6:166,550,574...166,553,289
Ensembl chr 6:166,549,943...166,553,230
JBrowse link
G RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:17195088 NCBI chr 6:27,601,692...27,605,127
Ensembl chr 6:27,601,692...27,605,083
JBrowse link
G RSPO3 R-spondin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17468756 NCBI chr 1:35,985,985...36,066,432
Ensembl chr 1:35,984,949...36,067,079
JBrowse link
G RUNX2 RUNX family transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32198086 NCBI chr 7:40,106,581...40,353,304
Ensembl chr 7:40,106,513...40,459,686
JBrowse link
G RXRB retinoid X receptor beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:22322885 NCBI chr 7:25,236,005...25,242,842
Ensembl chr 7:25,236,007...25,242,875
JBrowse link
G SERPINB2 serpin family B member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 1:157,871,919...157,886,525
Ensembl chr 1:157,872,212...157,886,753
JBrowse link
G SERPINB5 serpin family B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16799634 NCBI chr 1:158,167,756...158,195,896
Ensembl chr 1:158,167,643...158,195,796
JBrowse link
G SETBP1 SET binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chr 1:94,295,332...94,666,560
Ensembl chr 1:94,295,637...94,663,029
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360
JBrowse link
G SF3B1 splicing factor 3b subunit 1 ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:23634996 PMID:26619011 NCBI chr15:101,274,968...101,338,018
Ensembl chr15:101,191,854...101,338,023
JBrowse link
G SF3B2 splicing factor 3b subunit 2 ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:26619011 NCBI chr 2:6,279,039...6,295,550
Ensembl chr 2:6,279,048...6,294,640
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chr17:10,436,414...10,489,773
Ensembl chr17:10,436,426...10,489,748
JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chr 8:75,337,311...75,345,926
Ensembl chr 8:75,337,133...75,345,926
JBrowse link
G SFRP5 secreted frizzled related protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chr14:109,120,382...109,125,655
Ensembl chr14:109,119,822...109,125,686
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 no_association ISO CTD Direct Evidence: marker/mechanism
DNA:SNP:CDS:no association between SNP rs1979277, rs1979276 or rs3783 and susceptibility to breast cancer
CTD
RGD
PMID:17311260 PMID:17595805 RGD:2300328 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,414,446...60,435,450
JBrowse link
G SIM1 SIM bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chr 1:67,213,685...67,294,455
Ensembl chr 1:67,214,337...67,294,397
JBrowse link
G SIRT1 sirtuin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SLC10A6 solute carrier family 10 member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30186172 NCBI chr 8:131,997,359...132,023,739
Ensembl chr 8:131,969,291...132,021,981
JBrowse link
G SLC16A3 solute carrier family 16 member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22313602 NCBI chr12:796,882...807,480
Ensembl chr12:796,884...803,554
JBrowse link
G SLC22A18 solute carrier family 22 member 18 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr 2:2,032,370...2,055,756
Ensembl chr 2:2,028,396...2,055,752
JBrowse link
G SLC28A1 solute carrier family 28 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16837820 NCBI chr 7:52,606,428...52,652,928
Ensembl chr 7:52,605,289...52,652,876
JBrowse link
G SLC2A1 solute carrier family 2 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 NCBI chr 6:168,535,398...168,561,170
Ensembl chr 6:168,534,655...168,690,095
JBrowse link
G SLC2A10 solute carrier family 2 member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chr17:48,824,054...48,842,811
Ensembl chr17:48,824,414...48,843,201
JBrowse link
G SLC2A2 solute carrier family 2 member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 NCBI chr13:109,592,595...109,614,105
Ensembl chr13:109,587,256...109,623,787
JBrowse link
G SLC2A5 solute carrier family 2 member 5 ISO CTD Direct Evidence: therapeutic CTD PMID:15449313 NCBI chr 6:69,507,829...69,535,794
Ensembl chr 6:69,507,825...69,535,372
JBrowse link
G SLC39A6 solute carrier family 39 member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12839489 NCBI chr 6:119,861,853...119,885,836
Ensembl chr 6:119,861,843...119,926,665
JBrowse link
G SLC5A5 solute carrier family 5 member 5 ISO CTD Direct Evidence: therapeutic CTD PMID:12489024 NCBI chr 2:59,869,157...59,885,086
Ensembl chr 2:59,869,154...59,885,265
JBrowse link
G SMAD4 SMAD family member 4 ISO ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast cancer
ClinVar PMID:8898652 PMID:9214508 PMID:9285566 PMID:9582123 PMID:9679244 More... NCBI chr 1:100,521,843...100,633,501
Ensembl chr 1:100,514,791...100,628,029
JBrowse link
G SNAI1 snail family transcriptional repressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 PMID:24014025 NCBI chr17:51,546,446...51,552,498
Ensembl chr17:51,546,393...51,552,504
JBrowse link
G SNAI2 snail family transcriptional repressor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chr 4:79,264,880...79,268,475
Ensembl chr 4:79,264,878...79,268,475
JBrowse link
G SNCG synuclein gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:20595634 NCBI chr14:87,916,353...87,922,111
Ensembl chr14:87,904,773...87,922,112
JBrowse link
G SNX32 sorting nexin 32 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 2:6,474,788...6,488,738
Ensembl chr 2:6,475,024...6,488,658
JBrowse link
G SOCS1 suppressor of cytokine signaling 1 ISO DNA:hypermethylation RGD PMID:15361843 RGD:2298907 NCBI chr 3:31,879,143...31,883,041
Ensembl chr 3:31,881,225...31,884,969
JBrowse link
G SOD2 superoxide dismutase 2 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:15168344 PMID:17965603 PMID:19385967 PMID:19756960 PMID:20562527 RGD:1581248 NCBI chr 1:7,679,352...7,689,564
Ensembl chr 1:7,651,280...7,691,723
JBrowse link
G SPATA18 spermatogenesis associated 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 8:39,163,001...39,206,217
Ensembl chr 8:39,148,906...39,205,255
JBrowse link
G SPP1 secreted phosphoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18949741 PMID:22531848 NCBI chr 8:131,077,786...131,085,334
Ensembl chr 8:131,077,786...131,085,340
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase disease_progression ISO protein:altered localization:cytoplasm
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:19830888 PMID:21357651 RGD:2315076 NCBI chr17:40,470,970...40,524,862
Ensembl chr17:40,471,009...40,524,860
JBrowse link
G SREBF2 sterol regulatory element binding transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30394316 NCBI chr 5:6,719,484...6,784,724
Ensembl chr 5:6,719,487...6,784,672
JBrowse link
G ST14 ST14 transmembrane serine protease matriptase disease_progression ISO protein:increased expression:breast RGD PMID:17163404 RGD:2315089 NCBI chr 9:56,888,246...56,929,771
Ensembl chr 9:56,888,246...56,929,771
JBrowse link
G STARD8 StAR related lipid transfer domain containing 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr  X:54,773,189...54,856,716
Ensembl chr  X:54,773,171...54,856,713
JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14975756 NCBI chr12:20,407,316...20,471,091
Ensembl chr12:20,407,233...20,472,993
JBrowse link
G STAT5A signal transducer and activator of transcription 5A ISO protein:altered localization:nucleus
CTD Direct Evidence: marker/mechanism
protein:decreased expression:breast
RGD
CTD
PMID:15609129 PMID:16133357 RGD:2291930 RGD:2291932 NCBI chr12:20,474,221...20,498,785
Ensembl chr12:20,474,225...20,499,138
JBrowse link
G STC2 stanniocalcin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18492817 NCBI chr16:50,989,676...51,001,412
Ensembl chr16:50,989,432...51,004,484
JBrowse link
G STMN1 stathmin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr 6:83,356,404...83,362,546
Ensembl chr 6:83,356,411...83,362,500
JBrowse link
G STXBP4 syntaxin binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr12:31,277,116...31,478,828
Ensembl chr12:31,277,487...31,473,378
JBrowse link
G SYNE1 spectrin repeat containing nuclear envelope protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 1:13,715,644...14,201,711 JBrowse link
G SYNJ2 synaptojanin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 1:9,014,206...9,109,050
Ensembl chr 1:9,014,551...9,109,103
JBrowse link
G TAFA4 TAFA chemokine like family member 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chr13:50,142,679...50,353,448
Ensembl chr13:50,142,679...50,353,425
JBrowse link
G TANK TRAF family member associated NFKB activator ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr15:67,970,972...68,048,681 JBrowse link
G TBX3 T-box transcription factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21098263 NCBI chr14:37,582,704...37,596,767
Ensembl chr14:37,582,822...37,596,767
JBrowse link
G TCL1B TCL1 family AKT coactivator B ISO CTD Direct Evidence: marker/mechanism CTD PMID:20228224 NCBI chr 7:116,912,974...116,917,940
Ensembl chr 7:116,912,976...116,917,934
JBrowse link
G TERT telomerase reverse transcriptase disease_progression
susceptibility
ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:breast
DNA:SNPs:promoter:-1381C>T,-659G>A,-244C>T (human)
mRNA:increased expression:plasma
CTD
RGD
PMID:14654933 PMID:17616810 PMID:17848914 PMID:17974999 PMID:23535731 RGD:2291969 RGD:2291981 RGD:2291983 RGD:2291987 NCBI chr16:79,258,591...79,276,421
Ensembl chr16:79,258,591...79,276,421
JBrowse link
G TFAP2A transcription factor AP-2 alpha ISO CTD Direct Evidence: therapeutic CTD PMID:16204029 NCBI chr 7:7,221,654...7,244,626
Ensembl chr 7:7,221,656...7,244,477
JBrowse link
G TFF1 trefoil factor 1 disease_progression ISO protein:increased expression:breast RGD PMID:16267614 RGD:2292002 NCBI chr13:205,687,558...205,691,512 JBrowse link
G TFPI2 tissue factor pathway inhibitor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr 9:73,684,236...73,694,663
Ensembl chr 9:73,673,535...73,689,095
JBrowse link
G TFRC transferrin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16904380 PMID:19238537 NCBI chr13:133,976,765...133,997,554
Ensembl chr13:133,970,594...134,000,278
JBrowse link
G TGM2 transglutaminase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 NCBI chr17:41,186,765...41,221,686
Ensembl chr17:41,186,766...41,221,637
JBrowse link
G THBS1 thrombospondin 1 ISO CTD Direct Evidence: therapeutic CTD PMID:9309585 NCBI chr 1:131,728,781...131,746,098
Ensembl chr 1:131,728,781...131,746,115
JBrowse link
G THEMIS2 thymocyte selection associated family member 2 ISO CTD Direct Evidence: therapeutic CTD PMID:19942713 NCBI chr 6:85,010,879...85,027,934
Ensembl chr 6:85,010,883...85,030,723
JBrowse link
G TIMP2 TIMP metallopeptidase inhibitor 2 ISO protein:decreased expression:breast
protein:decreased expression:serum
RGD PMID:17240786 PMID:17642161 RGD:2290392 RGD:2290398 NCBI chr12:3,254,794...3,300,835
Ensembl chr12:3,254,493...3,300,835
JBrowse link
G TIMP4 TIMP metallopeptidase inhibitor 4 ISO RGD PMID:9190892 RGD:2290455 NCBI chr13:68,179,803...68,191,199
Ensembl chr13:68,179,805...68,190,942
JBrowse link
G TLE3 TLE family member 3, transcriptional corepressor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chr 1:167,808,508...167,855,913
Ensembl chr 1:167,808,509...167,855,911
JBrowse link
G TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 ISO DNA:hypermethylation:promoter RGD PMID:16234815 RGD:2290489 NCBI chr15:96,594,901...96,856,848
Ensembl chr15:96,594,962...96,855,745
JBrowse link
G TMEM25 transmembrane protein 25 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chr 9:45,834,197...45,838,978
Ensembl chr 9:45,829,176...45,838,975
JBrowse link
G TNF tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 PMID:19446661 NCBI chr 7:23,699,635...23,702,393
Ensembl chr 7:23,699,636...23,703,655
JBrowse link
G TNFSF10 TNF superfamily member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:18483385 NCBI chr13:111,021,952...111,103,060
Ensembl chr13:110,981,604...111,107,423
JBrowse link
G TNIP1 TNFAIP3 interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chr16:71,926,038...71,979,969
Ensembl chr16:71,926,133...71,979,967
JBrowse link
G TOP2A DNA topoisomerase II alpha disease_progression ISO DNA:amplification, deletion (human)
DNA:deletion (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:11583189 PMID:12006526 PMID:16234514 PMID:18465341 PMID:18702822 More... RGD:2315120 RGD:2315127 RGD:2315129 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
G TOX3 TOX high mobility group box family member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 NCBI chr 6:32,492,686...32,609,923
Ensembl chr 6:32,494,170...32,609,928
JBrowse link
G TP53 tumor protein p53 susceptibility ISO DNA:missense mutation: :p.R72P
ClinVar Annotator: match by term: Breast Neoplasms
ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: Breast cancer
CTD Direct Evidence: marker/mechanism
DNA:mutations:exon
RGD
ClinVar
CTD
PMID:1349175 PMID:1359493 PMID:1565143 PMID:1565144 PMID:1569604 More... RGD:2290531 RGD:2290534 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:12374701 PMID:30705370 RGD:2325153 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,958,518...128,028,718
JBrowse link
G TP53BP2 tumor protein p53 binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chr10:19,823,932...19,889,883
Ensembl chr10:19,823,933...19,889,869
JBrowse link
G TP63 tumor protein p63 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25739959 NCBI chr13:127,115,990...127,347,082
Ensembl chr13:127,116,104...127,347,075
JBrowse link
G TP73 tumor protein p73 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28212736 NCBI chr 6:65,169,770...65,228,997
Ensembl chr 6:65,177,682...65,228,992
JBrowse link
G TRERF1 transcriptional regulating factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chr 7:37,333,379...37,555,299
Ensembl chr 7:37,333,947...37,656,235
JBrowse link
G TRIM47 tripartite motif containing 47 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31981573 NCBI chr12:5,535,259...5,539,721
Ensembl chr12:5,535,337...5,539,721
JBrowse link
G TRMT11 tRNA methyltransferase 11 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chr 1:36,930,857...37,002,079
Ensembl chr 1:36,930,957...37,002,056
JBrowse link
G TXN thioredoxin ISO CTD Direct Evidence: marker/mechanism CTD PMID:30396169 NCBI chr 1:251,264,180...251,278,000
Ensembl chr 1:251,263,175...251,277,988
JBrowse link
G TYMS thymidylate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16723031 PMID:19020767 PMID:21501481 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,640,031...105,660,601
JBrowse link
G UBD ubiquitin D ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 7:22,501,130...22,502,883
Ensembl chr 7:22,501,130...22,503,094
JBrowse link
G UBE2C ubiquitin conjugating enzyme E2 C ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chr17:48,018,403...48,021,542
Ensembl chr17:48,018,400...48,021,534
JBrowse link
G UBLCP1 ubiquitin like domain containing CTD phosphatase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr16:64,182,918...64,205,684
Ensembl chr16:64,178,935...64,205,675
JBrowse link
G UMPS uridine monophosphate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19020767 PMID:19151563 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
G UPK1B uroplakin 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chr13:141,013,953...141,026,368
Ensembl chr13:141,013,099...141,038,902
JBrowse link
G VDR vitamin D receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16280049 PMID:22892281 NCBI chr 5:78,205,807...78,266,505
Ensembl chr 5:78,205,810...78,267,321
JBrowse link
G VEGFA vascular endothelial growth factor A ISO protein:increased expression:breast RGD PMID:19567820 PMID:19722158 RGD:2315457 RGD:2315461 NCBI chr 7:38,746,393...38,762,282
Ensembl chr 7:38,746,052...38,761,038
JBrowse link
G VEGFB vascular endothelial growth factor B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23146280 NCBI chr 2:7,872,873...7,876,149 JBrowse link
G VEGFC vascular endothelial growth factor C ISO CTD Direct Evidence: marker/mechanism CTD PMID:18509974 PMID:26124351 NCBI chr15:39,037,764...39,136,234
Ensembl chr15:39,037,893...39,133,041
JBrowse link
G VIM vimentin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21501481 PMID:24014025 PMID:25330770 PMID:27811057 NCBI chr10:43,516,441...43,526,172
Ensembl chr10:43,517,307...43,526,172
JBrowse link
G VPS39 VPS39 subunit of HOPS complex ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chr 1:129,144,338...129,198,760
Ensembl chr 1:129,144,344...129,198,764
JBrowse link
G WNT10B Wnt family member 10B ISO CTD Direct Evidence: marker/mechanism CTD PMID:12437293 NCBI chr 5:14,997,377...15,013,928
Ensembl chr 5:14,997,381...15,013,919
JBrowse link
G WT1 WT1 transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961577 NCBI chr 2:28,411,467...28,456,007
Ensembl chr 2:28,411,794...28,456,003
JBrowse link
G WWOX WW domain containing oxidoreductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17200365 NCBI chr 6:8,910,209...9,871,048
Ensembl chr 6:8,911,139...9,871,102
JBrowse link
G XPO1 exportin 1 ISO ClinVar Annotator: match by term: Breast cancer ClinVar PMID:26619011 NCBI chr 3:80,255,016...80,300,260
Ensembl chr 3:80,255,141...80,302,234
JBrowse link
G XRCC1 X-ray repair cross complementing 1 disease_progression
susceptibility
no_association
ISO DNA:polymorphism
DNA:polymorphism:intron:IVS10+141G>A
DNA:polymorphisms: :p.R194W, p.R399Q
DNA:polymorphism: :p.R399Q
RGD PMID:16596326 PMID:16963196 PMID:17381415 PMID:19051060 RGD:2302566 RGD:2302573 RGD:2302574 RGD:2302575 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
G XRCC2 X-ray repair cross complementing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12023982 NCBI chr18:4,808,428...4,834,281
Ensembl chr18:4,808,469...4,835,804
JBrowse link
G XRCC3 X-ray repair cross complementing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12023982
G YAP1 Yes1 associated transcriptional regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chr 9:32,811,629...32,924,926
Ensembl chr 9:32,811,416...32,925,603
JBrowse link
G YBX1 Y-box binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15703814 NCBI chr 6:168,716,782...168,736,475
Ensembl chr 6:168,716,789...168,736,604
JBrowse link
G ZC3H11A zinc finger CCCH-type containing 11A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chr 9:64,518,895...64,554,871 JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 PMID:21501481 NCBI chr10:42,013,114...42,216,139
Ensembl chr10:42,013,045...42,214,205
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 NCBI chr15:7,498,879...7,631,347
Ensembl chr15:7,499,026...7,632,655
JBrowse link
G ZNF365 zinc finger protein 365 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278746 NCBI chr14:65,861,398...65,888,341
Ensembl chr14:65,861,563...65,888,337
JBrowse link
G ZNF366 zinc finger protein 366 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20008677 PMID:21122099 NCBI chr16:48,708,604...49,048,767
Ensembl chr16:48,708,610...49,048,841
JBrowse link
G ZNF404 zinc finger protein 404 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 6:50,697,485...50,721,533
Ensembl chr 6:50,696,065...50,721,480
JBrowse link
G ZNF432 zinc finger protein 432 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chr 6:58,137,204...58,152,691 JBrowse link
G ZSWIM5 zinc finger SWIM-type containing 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chr 6:166,138,127...166,326,002
Ensembl chr 6:166,138,057...166,325,988
JBrowse link
Animal Mammary Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACSL1 acyl-CoA synthetase long chain family member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chr15:45,866,858...45,936,327
Ensembl chr15:45,866,851...46,090,099
JBrowse link
G ACTB actin beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chr 3:4,084,275...4,090,383
Ensembl chr 3:4,082,216...4,090,356
JBrowse link
G ACTG1 actin gamma 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chr12:1,320,355...1,323,219
Ensembl chr12:1,160,350...1,323,217
JBrowse link
G ACTN4 actinin alpha 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chr 6:47,493,834...47,565,999
Ensembl chr 6:47,493,882...47,569,609
JBrowse link
G ADCY5 adenylate cyclase 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chr13:136,965,746...137,133,795
Ensembl chr13:136,973,000...137,135,349
JBrowse link
G ALCAM activated leukocyte cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chr13:153,794,991...153,998,241
Ensembl chr13:153,794,991...153,998,208
JBrowse link
G ANXA1 annexin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 PMID:22248470 NCBI chr 1:226,414,200...226,431,963
Ensembl chr 1:226,414,307...226,432,287
JBrowse link
G ANXA2 annexin A2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22248470 NCBI chr 1:111,588,721...111,635,064
Ensembl chr 1:111,588,306...111,635,064
JBrowse link
G ANXA4 annexin A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chr 3:72,623,311...72,654,591
Ensembl chr 3:72,622,357...72,793,636
JBrowse link
G APC APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:9111214 NCBI chr 2:116,913,354...116,985,303
Ensembl chr 2:116,812,582...117,034,912
JBrowse link
G AQP1 aquaporin 1 (Colton blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chr18:42,063,482...42,076,741
Ensembl chr18:42,063,481...42,076,746
JBrowse link
G AREG amphiregulin ISO mRNA:increased expression:mammary gland RGD PMID:18421211 RGD:2292665 NCBI chr 8:70,417,935...70,428,106
Ensembl chr 8:70,417,923...70,428,102
JBrowse link
G ATP5IF1 ATP synthase inhibitory factor subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 NCBI chr 6:85,307,242...85,309,211
Ensembl chr 6:85,307,189...85,321,350
JBrowse link
G BASP1 brain abundant membrane attached signal protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chr16:6,384,322...6,440,507 JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO CTD Direct Evidence: marker/mechanism CTD PMID:12203372 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G CAPZB capping actin protein of muscle Z-line subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chr 6:77,780,682...77,912,653
Ensembl chr 6:77,780,681...77,912,617
JBrowse link
G CASK calcium/calmodulin dependent serine protein kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chr  X:37,166,973...37,535,723
Ensembl chr  X:37,167,577...37,536,160
JBrowse link
G CCND1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:14522882 PMID:16316942 PMID:17173897 NCBI chr 2:3,621,242...3,633,380
Ensembl chr 2:3,621,246...3,633,296
JBrowse link
G