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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Breast Neoplasms
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Accession:DOID:9008939 term browser browse the term
Definition:Tumors or cancer of the human BREAST.
Synonyms:exact_synonym: breast neoplasm;   breast tumor;   breast tumors;   human mammary neoplasm;   human mammary neoplasms
 narrow_synonym: BRIP1-related disorder
 primary_id: MESH:D001943
 xref: EFO:0003869


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Breast Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1 ATP binding cassette subfamily B member 1 ISO DNA:polymorphism: :3435C>T (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:19752884 PMID:22311042 RGD:2315550 NCBI chrNW_004955432:4,911,774...5,085,349 JBrowse link
G Abcc1 ATP binding cassette subfamily C member 1 (ABCC1 blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:25078270 NCBI chrNW_004955442:729,322...858,826
Ensembl chrNW_004955442:729,316...860,290
JBrowse link
G Abcg2 ATP binding cassette subfamily G member 2 (JR blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:10930538 NCBI chrNW_004955474:12,365,903...12,408,715 JBrowse link
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:20234815 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239
JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:35191604 NCBI chrNW_004955455:10,282,308...10,427,439
Ensembl chrNW_004955455:10,308,192...10,426,076
JBrowse link
G Ache acetylcholinesterase (Cartwright blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004955573:79,606...85,799
Ensembl chrNW_004955573:80,298...85,799
JBrowse link
G Acta2 actin alpha 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955425:4,023,001...4,039,980
Ensembl chrNW_004955425:4,026,430...4,040,747
JBrowse link
G Acvr1 activin A receptor type 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004955449:15,587,958...15,706,432
Ensembl chrNW_004955449:15,640,230...15,708,694
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chrNW_004955450:15,853,372...15,927,966
Ensembl chrNW_004955450:15,853,366...15,928,200
JBrowse link
G Adam33 ADAM metallopeptidase domain 33 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30226539 NCBI chrNW_004955415:14,523,517...14,535,701
Ensembl chrNW_004955415:14,524,354...14,533,700
JBrowse link
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23289900 NCBI chrNW_004955407:26,524,487...26,533,038
Ensembl chrNW_004955407:26,524,130...26,533,038
JBrowse link
G Adar adenosine deaminase RNA specific ISO CTD Direct Evidence: marker/mechanism CTD PMID:28188287 NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938
JBrowse link
G Ager advanced glycosylation end-product specific receptor no_association ISO DNA:SNPs, insertion/deletion:promoter, :-374T>A, -429T/C (human)
DNA:SNP, haplotype: :rs184003 (human)
RGD PMID:18058469 PMID:22497255 PMID:24619131 RGD:8695964 RGD:8695984 RGD:8695989 NCBI chrNW_004955437:645,482...648,607
Ensembl chrNW_004955437:645,897...648,479
JBrowse link
G Agr2 anterior gradient 2, protein disulphide isomerase family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:20531310 NCBI chrNW_004955410:19,984,768...19,995,446
Ensembl chrNW_004955410:19,984,768...19,995,733
JBrowse link
G Ahr aryl hydrocarbon receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21515334 PMID:22296396 NCBI chrNW_004955410:20,428,531...20,459,482
Ensembl chrNW_004955410:20,428,546...20,456,836
JBrowse link
G Akap12 A-kinase anchoring protein 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955439:10,241,298...10,262,416
Ensembl chrNW_004955439:10,238,664...10,263,081
JBrowse link
G Akt1 AKT serine/threonine kinase 1 susceptibility ISO DNA:point mutation:cds:p.E17K (human)
ClinVar Annotator: match by term: Breast Neoplasms
RGD
ClinVar
PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... RGD:1643334 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Akt2 AKT serine/threonine kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004955578:950,258...1,004,438
Ensembl chrNW_004955578:967,593...1,004,438
JBrowse link
G Alk ALK receptor tyrosine kinase ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:18724359 PMID:18923523 PMID:18923524 PMID:18923525 PMID:21242967 More... NCBI chrNW_004955469:11,049,373...11,751,235
Ensembl chrNW_004955469:11,047,048...11,548,233
JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955412:9,875,905...9,923,728 JBrowse link
G Angptl4 angiopoietin like 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21489049 NCBI chrNW_004955563:1,024,163...1,030,816
Ensembl chrNW_004955563:1,021,414...1,029,894
JBrowse link
G Ankrd34a ankyrin repeat domain 34A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955568:130,062...134,841
Ensembl chrNW_004955568:131,259...134,841
JBrowse link
G Anxa1 annexin A1 disease_progression ISO RGD PMID:20353277 RGD:7421540 NCBI chrNW_004955512:5,686,508...5,703,645 JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955495:6,466,434...6,489,612
Ensembl chrNW_004955495:6,467,357...6,489,633
JBrowse link
G Aprt adenine phosphoribosyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955541:2,687,938...2,690,906
Ensembl chrNW_004955541:2,687,938...2,690,906
JBrowse link
G Ar androgen receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21633166 PMID:22174584 NCBI chrNW_004955475:7,013,960...7,192,473
Ensembl chrNW_004955475:7,013,960...7,186,069
JBrowse link
G Araf A-Raf proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: therapeutic CTD PMID:12432273 NCBI chrNW_004955516:521,479...532,980
Ensembl chrNW_004955516:521,479...533,212
JBrowse link
G Areg amphiregulin ISO CTD Direct Evidence: therapeutic CTD PMID:11237771 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088
JBrowse link
G Arf1 ADP ribosylation factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27517156 NCBI chrNW_004955581:319,942...335,112
Ensembl chrNW_004955581:319,942...335,112
JBrowse link
G Arhgdia Rho GDP dissociation inhibitor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955506:1,297,604...1,300,072
Ensembl chrNW_004955506:1,297,956...1,300,072
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:31932695 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Arrdc3 arrestin domain containing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chrNW_004955418:20,538,858...20,550,876
Ensembl chrNW_004955418:20,538,983...20,548,862
JBrowse link
G Artn artemin ISO CTD Direct Evidence: marker/mechanism CTD PMID:20305694 NCBI chrNW_004955537:3,460,176...3,464,335
Ensembl chrNW_004955537:3,460,176...3,464,335
JBrowse link
G Atg10 autophagy related 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955418:28,118,843...28,368,358
Ensembl chrNW_004955418:28,119,912...28,363,714
JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:6504056 PMID:7792600 PMID:8755918 PMID:8797579 PMID:8808599 More... NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Atp6ap1l ATPase H+ transporting accessory protein 1 like ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955418:28,077,388...28,106,183 JBrowse link
G Atp7b ATPase copper transporting beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:11802810 NCBI chrNW_004955431:5,228,395...5,297,120
Ensembl chrNW_004955431:5,229,126...5,269,616
JBrowse link
G Aurka aurora kinase A ISO CTD Direct Evidence: marker/mechanism CTD PMID:18497064 NCBI chrNW_004955445:2,831,073...2,853,151
Ensembl chrNW_004955445:2,831,157...2,853,357
JBrowse link
G B4gat1 beta-1,4-glucuronyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955422:18,979,545...18,981,889
Ensembl chrNW_004955422:18,979,545...18,981,889
JBrowse link
G Bag1 BAG cochaperone 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19066611 NCBI chrNW_004955472:2,394,317...2,405,199 JBrowse link
G Bap1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 PMID:26719535 NCBI chrNW_004955430:2,391,970...2,400,645
Ensembl chrNW_004955430:2,390,524...2,400,645
JBrowse link
G Bard1 BRCA1 associated RING domain 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:20077502 PMID:21344236 PMID:25085752 PMID:25741868 PMID:26315354 More... NCBI chrNW_004955457:1,187,942...1,258,475
Ensembl chrNW_004955457:1,187,942...1,253,803
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: therapeutic CTD PMID:22572619 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bcar3 BCAR3 adaptor protein, NSP family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004955423:991,046...1,105,033
Ensembl chrNW_004955423:991,057...1,105,033
JBrowse link
G Bche butyrylcholinesterase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004955448:15,327,374...15,396,827
Ensembl chrNW_004955448:15,329,273...15,396,970
JBrowse link
G Bcl2 BCL2 apoptosis regulator disease_progression ISO CTD Direct Evidence: marker/mechanism
associated with Papillomavirus Infections;protein:increased expression:breast
DNA:polymorphism:promoter:-938C>A
CTD
RGD
PMID:12517783 PMID:16954440 PMID:17908970 PMID:18427947 PMID:18430249 More... RGD:2292908 RGD:2292909 RGD:2293016 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Bcl2a1 BCL2 related protein A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17659439 NCBI chrNW_004955533:773,912...785,040
Ensembl chrNW_004955533:773,912...785,037
JBrowse link
G Bcl2l1 BCL2 like 1 ISO RGD PMID:17675586 RGD:1643478 NCBI chrNW_004955422:29,254,440...29,307,104
Ensembl chrNW_004955422:29,254,216...29,308,174
JBrowse link
G Bgn biglycan ISO CTD Direct Evidence: marker/mechanism CTD PMID:35234341 NCBI chrNW_004955580:252,183...263,179
Ensembl chrNW_004955580:252,139...263,663
JBrowse link
G Birc2 baculoviral IAP repeat containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955412:5,658,322...5,685,628
Ensembl chrNW_004955412:5,659,478...5,685,114
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004955457:12,235,780...12,315,680
Ensembl chrNW_004955457:12,235,780...12,316,727
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:2102266 PMID:12068308 PMID:15035987 PMID:17314276 PMID:18039235 More... NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:824983 PMID:2152385 PMID:2504116 PMID:3175448 PMID:6455195 More... NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brca2 BRCA2 DNA repair associated susceptibility ISO DNA:mutation
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: BRIP1-related disorder | ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
RGD
ClinVar
PMID:8075631 PMID:8524414 PMID:8665505 PMID:8673091 PMID:8673092 More... RGD:1599503 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:32198086 NCBI chrNW_004955538:3,469,322...3,544,704
Ensembl chrNW_004955538:3,470,249...3,544,704
JBrowse link
G Brip1 BRCA1 interacting helicase 1 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
ClinVar Annotator: match by term: BRIP1-related disorder | ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor
ClinVar Annotator: match by term: BRIP1-related disorder | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor
ClinVar PMID:2455662 PMID:3375802 PMID:9536098 PMID:11301010 PMID:12872252 More... NCBI chrNW_004955451:2,705,834...2,820,610
Ensembl chrNW_004955451:2,707,793...2,818,592
JBrowse link
G Btk Bruton tyrosine kinase ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:24869598 PMID:25082755 PMID:25189416 PMID:25741868 PMID:27199251 More... NCBI chrNW_004955503:7,483,819...7,515,085
Ensembl chrNW_004955503:7,482,793...7,515,120
JBrowse link
G C1qbp complement C1q binding protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955467:10,788,142...10,792,272
Ensembl chrNW_004955467:10,788,277...10,792,449
JBrowse link
G Cadm1 cell adhesion molecule 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17260099 NCBI chrNW_004955412:16,673,401...17,005,082
Ensembl chrNW_004955412:16,669,099...17,005,014
JBrowse link
G Casp6 caspase 6 ISO protein:increased expression:breast RGD PMID:10574243 PMID:15210759 RGD:2301338 RGD:2301339 NCBI chrNW_004955496:575,839...584,287
Ensembl chrNW_004955496:577,832...584,287
JBrowse link
G Casp7 caspase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chrNW_004955431:18,685,408...18,723,221
Ensembl chrNW_004955431:18,686,190...18,723,524
JBrowse link
G Casp8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15601643 PMID:17293864 PMID:17450141 PMID:29915430 NCBI chrNW_004955403:322,082...348,591
Ensembl chrNW_004955403:322,555...347,053
JBrowse link
G Cat catalase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25322848 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464
JBrowse link
G Cav1 caveolin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19234134 PMID:19288272 PMID:20562527 PMID:21501481 NCBI chrNW_004955432:22,258,262...22,292,403
Ensembl chrNW_004955432:22,258,250...22,292,403
JBrowse link
G Ccl20 C-C motif chemokine ligand 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955453:6,846,625...6,850,007
Ensembl chrNW_004955453:6,846,549...6,850,031
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO RGD PMID:18708360 RGD:4891915 NCBI chrNW_004955481:10,293,758...10,301,118
Ensembl chrNW_004955481:10,293,399...10,301,143
JBrowse link
G Ccnd1 cyclin D1 disease_progression
susceptibility
ISO protein:increased expression:breast
CTD Direct Evidence: marker/mechanism
DNA:polymorphism
RGD
CTD
PMID:12839951 PMID:15647071 PMID:17255770 PMID:18194538 PMID:19636701 More... RGD:2289126 RGD:2289131 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Ccnd2 cyclin D2 ISO DNA:hypermethylation:breast
DNA, mRNA, protein:hypermethylation, decreased expression:promoter, breast
RGD PMID:11289162 PMID:17549626 RGD:2289149 RGD:2289158 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Ccnd3 cyclin D3 ISO DNA:polymorphism:promoter:-677C>T (human) RGD PMID:19142864 RGD:2316005 NCBI chrNW_004955437:8,266,523...8,273,855
Ensembl chrNW_004955437:8,268,118...8,273,855
JBrowse link
G Ccne1 cyclin E1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19385967 PMID:23624423 NCBI chrNW_004955468:7,803,610...7,814,872
Ensembl chrNW_004955468:7,803,346...7,814,872
JBrowse link
G Ccnh cyclin H ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955418:23,790,398...23,807,509
Ensembl chrNW_004955418:23,790,001...23,807,702
JBrowse link
G Cct5 chaperonin containing TCP1 subunit 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955426:132,106...144,251
Ensembl chrNW_004955426:131,871...144,354
JBrowse link
G Cd109 CD109 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955488:9,281,407...9,378,354
Ensembl chrNW_004955488:9,281,661...9,378,490
JBrowse link
G Cd40 CD40 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:17043144 NCBI chrNW_004955445:11,191,817...11,202,156
Ensembl chrNW_004955445:11,190,603...11,202,093
JBrowse link
G Cd44 CD44 molecule (IN blood group) ISO mRNA:splice variants:breast RGD PMID:18091389 RGD:2289345 NCBI chrNW_004955422:11,106,061...11,189,951 JBrowse link
G Cd74 CD74 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:19602265 NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826
JBrowse link
G Cda cytidine deaminase ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:10811482 PMID:25330770 NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565
JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:11305955 PMID:22703879 PMID:24728327 PMID:25741868 PMID:26072394 More... NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967
JBrowse link
G Cdh2 cadherin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955402:15,829,895...16,049,874
Ensembl chrNW_004955402:15,831,110...16,049,890
JBrowse link
G Cdh5 cadherin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955433:22,957,718...22,994,515
Ensembl chrNW_004955433:22,967,960...22,992,924
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A disease_progression ISO DNA:snp: :rs3176336 RGD PMID:16537179 PMID:18174243 RGD:2289652 RGD:2289656 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:17092400 NCBI chrNW_004955413:9,615,542...9,620,542
Ensembl chrNW_004955413:9,615,542...9,620,542
JBrowse link
G Cenpf centromere protein F ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955406:3,225,788...3,273,037
Ensembl chrNW_004955406:3,223,993...3,273,714
JBrowse link
G Cfl1 cofilin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955422:19,479,181...19,482,571
Ensembl chrNW_004955422:19,479,181...19,482,571
JBrowse link
G Cftr CF transmembrane conductance regulator ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:10925568 PMID:12874665 PMID:15905293 PMID:17539902 PMID:25580864 More... NCBI chrNW_004955432:23,179,645...23,328,347
Ensembl chrNW_004955432:23,178,866...23,328,382
JBrowse link
G Chek1 checkpoint kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25688741 NCBI chrNW_004955412:26,627,606...26,650,554 JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:10617473 PMID:11053450 PMID:11479205 PMID:11719428 PMID:11967536 More... NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Cks1b CDC28 protein kinase regulatory subunit 1B ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004955545:1,479,454...1,483,474
Ensembl chrNW_004955545:1,479,454...1,483,474
JBrowse link
G Cldn1 claudin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 PMID:24014025 NCBI chrNW_004955420:17,798,974...17,815,049
Ensembl chrNW_004955420:17,798,974...17,815,205
JBrowse link
G Cldn4 claudin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19142967 NCBI chrNW_004955456:13,961,743...13,965,498
Ensembl chrNW_004955456:13,962,497...13,963,126
JBrowse link
G Clic1 chloride intracellular channel 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955437:269,276...275,949
Ensembl chrNW_004955437:269,276...275,949
JBrowse link
G Clu clusterin severity
treatment
ISO RGD PMID:17203891 PMID:22613415 RGD:8729187 RGD:8764690 NCBI chrNW_004955403:50,160,598...50,175,876
Ensembl chrNW_004955403:50,160,598...50,175,876
JBrowse link
G Clul1 clusterin like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955402:9,312,643...9,361,358
Ensembl chrNW_004955402:9,312,348...9,356,662
JBrowse link
G Cmc2 C-X9-C motif containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955522:3,774,136...3,801,892
Ensembl chrNW_004955522:3,773,997...3,802,336
JBrowse link
G Cnr2 cannabinoid receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16818634 NCBI chrNW_004955452:3,763,742...3,795,069
Ensembl chrNW_004955452:3,763,742...3,795,069
JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955532:650,913...681,186 JBrowse link
G Comt catechol-O-methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:9407957 PMID:15455371 PMID:16077979 NCBI chrNW_004955442:18,130,282...18,152,153
Ensembl chrNW_004955442:18,130,987...18,137,412
JBrowse link
G Cotl1 coactosin like F-actin binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955541:153,542...183,965
Ensembl chrNW_004955541:153,542...183,965
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955422:17,105,887...17,159,696
Ensembl chrNW_004955422:17,109,256...17,159,838
JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955478:10,380,185...10,390,838
Ensembl chrNW_004955478:10,379,287...10,404,825
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO RGD PMID:16391854 RGD:7488899 NCBI chrNW_004955442:19,358,202...19,388,552
Ensembl chrNW_004955442:19,358,081...19,388,815
JBrowse link
G Csf1 colony stimulating factor 1 ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16618760 RGD:2293640 NCBI chrNW_004955435:13,404,236...13,423,059
Ensembl chrNW_004955435:13,404,508...13,424,247
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16618760 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Csf2 colony stimulating factor 2 ISO CTD Direct Evidence: therapeutic CTD PMID:11325840 NCBI chrNW_004955408:3,452,009...3,454,255
Ensembl chrNW_004955408:3,451,965...3,454,312
JBrowse link
G Csf3 colony stimulating factor 3 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:7541186 PMID:7543699 PMID:7692001 PMID:9018096 PMID:12926135 More... NCBI chrNW_004955451:14,688,181...14,690,126
Ensembl chrNW_004955451:14,688,181...14,690,126
JBrowse link
G Cst6 cystatin E/M ISO CTD Direct Evidence: marker/mechanism CTD PMID:17043665 NCBI chrNW_004955422:19,326,302...19,327,449
Ensembl chrNW_004955422:19,313,352...19,327,360
JBrowse link
G Ctnna1 catenin alpha 1 ISO protein:decreased expression:breast
protein:increased expression:breast
RGD PMID:11431364 PMID:17223851 RGD:2289792 RGD:2289796 NCBI chrNW_004955418:1,592,555...1,754,423
Ensembl chrNW_004955418:1,592,229...1,754,689
JBrowse link
G Ctnnb1 catenin beta 1 disease_progression ISO protein:decreased expression:breast
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:12165863 PMID:16707478 PMID:17223851 PMID:25330770 RGD:2289792 RGD:2289831 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Ctu1 cytosolic thiouridylase subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955558:959,819...960,369 JBrowse link
G Ctu2 cytosolic thiouridylase subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955541:2,610,021...2,618,197 JBrowse link
G Cul5 cullin 5 ISO CTD Direct Evidence: therapeutic CTD PMID:20949323 NCBI chrNW_004955412:10,266,072...10,336,156
Ensembl chrNW_004955412:10,256,381...10,336,156
JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:6504056 PMID:7792600 PMID:8755918 PMID:8797579 PMID:8808599 More... NCBI chrNW_004955412:10,533,174...10,567,364
Ensembl chrNW_004955412:10,533,441...10,567,612
JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18521742 NCBI chrNW_004955546:1,929,269...1,941,690
Ensembl chrNW_004955546:1,929,269...1,941,690
JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643
JBrowse link
G Cxcl9 C-X-C motif chemokine ligand 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004955433:724,566...731,945
Ensembl chrNW_004955433:724,515...732,192
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25753200 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109
JBrowse link
G Dap3 death associated protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955545:1,951,008...1,981,174
Ensembl chrNW_004955545:1,951,150...1,980,861
JBrowse link
G Ddit3 DNA damage inducible transcript 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14604972 NCBI chrNW_004955458:5,232,979...5,238,513
Ensembl chrNW_004955458:5,232,979...5,238,513
JBrowse link
G Dek DEK proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955408:28,470,207...28,472,083 JBrowse link
G Depp1 DEPP autophagy regulator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955546:2,291,829...2,293,375
Ensembl chrNW_004955546:2,291,829...2,293,375
JBrowse link
G Des desmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955453:14,039,502...14,046,572
Ensembl chrNW_004955453:14,039,502...14,047,246
JBrowse link
G Dhfr dihydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21501481 PMID:28188287 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:21266384 PMID:24728327 PMID:25741868 PMID:26467025 PMID:28492532 More... NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G Dio3 iodothyronine deiodinase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955538:1,042,949...1,045,038 JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420
JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22520950 PMID:28544374 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:22520950 NCBI chrNW_004955469:7,264,431...7,367,059
Ensembl chrNW_004955469:7,269,952...7,367,059
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:18221536 PMID:22520950 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19020767 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Dsc3 desmocollin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16799634 NCBI chrNW_004955402:18,401,065...18,439,827
Ensembl chrNW_004955402:18,399,220...18,439,878
JBrowse link
G Dtx3 deltex E3 ubiquitin ligase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955458:5,328,723...5,334,092
Ensembl chrNW_004955458:5,328,725...5,334,092
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955412:6,267,726...6,518,888
Ensembl chrNW_004955412:6,268,214...6,518,468
JBrowse link
G E2f1 E2F transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14672398 NCBI chrNW_004955422:27,638,625...27,643,261
Ensembl chrNW_004955422:27,633,827...27,642,241
JBrowse link
G Ednrb endothelin receptor type B ISO CTD Direct Evidence: therapeutic CTD PMID:16244791 NCBI chrNW_004955404:29,394,253...29,425,358
Ensembl chrNW_004955404:29,394,164...29,425,358
JBrowse link
G Eef1b2 eukaryotic translation elongation factor 1 beta 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955457:8,835,121...8,837,816
Ensembl chrNW_004955457:8,835,121...8,837,816
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955495:4,800,103...4,807,714
Ensembl chrNW_004955495:4,799,922...4,807,252
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19115204 NCBI chrNW_004955424:27,181,717...27,240,067
Ensembl chrNW_004955424:27,181,099...27,240,446
JBrowse link
G Efna1 ephrin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20154726 NCBI chrNW_004955545:1,610,929...1,617,217
Ensembl chrNW_004955545:1,610,929...1,617,460
JBrowse link
G Egf epidermal growth factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16175315 PMID:21942447 PMID:23064031 NCBI chrNW_004955496:325,954...401,430
Ensembl chrNW_004955496:328,075...401,569
JBrowse link
G Egfr epidermal growth factor receptor disease_progression ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:lung, tumor (mouse)
CTD
RGD
PMID:16950593 PMID:18768436 PMID:19075277 PMID:20135347 PMID:20941507 More... RGD:5037225 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955422:27,245,381...27,263,342 JBrowse link
G Eif6 eukaryotic translation initiation factor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004956210:226...6,819
Ensembl chrNW_004956210:21...9,816
JBrowse link
G Elk3 ETS transcription factor ELK3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16583263 NCBI chrNW_004955405:32,526,911...32,559,580
Ensembl chrNW_004955405:32,526,673...32,557,197
JBrowse link
G Elp1 elongator acetyltransferase complex subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955419:18,035,197...18,097,681
Ensembl chrNW_004955419:18,038,507...18,095,894
JBrowse link
G Elp3 elongator acetyltransferase complex subunit 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955403:50,565,496...50,635,226
Ensembl chrNW_004955403:50,565,583...50,637,294
JBrowse link
G Emsy EMSY transcriptional repressor, BRCA2 interacting ISO CTD Direct Evidence: marker/mechanism CTD PMID:19636701 NCBI chrNW_004955414:15,395,851...15,482,490
Ensembl chrNW_004955414:15,401,664...15,477,828
JBrowse link
G Eng endoglin treatment ISO RGD PMID:21431419 RGD:7257526 NCBI chrNW_004955419:818,797...853,319
Ensembl chrNW_004955419:818,932...852,694
JBrowse link
G Eno1 enolase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19655245 NCBI chrNW_004955486:4,275,371...4,287,152
Ensembl chrNW_004955486:4,274,238...4,289,809
JBrowse link
G Ep300 E1A binding protein p300 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1 like 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17260099 NCBI chrNW_004955402:5,459,586...5,674,745
Ensembl chrNW_004955402:5,590,724...5,675,340
JBrowse link
G Ephb4 EPH receptor B4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004955573:132,328...150,879
Ensembl chrNW_004955573:132,328...152,595
JBrowse link
G Epor erythropoietin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19706814 NCBI chrNW_004955495:2,293,587...2,299,302
Ensembl chrNW_004955495:2,293,540...2,298,715
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 disease_progression
treatment
ISO mRNA:increased expression:blood
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
RGD
ClinVar
PMID:15753357 PMID:16397024 PMID:16609042 PMID:16863509 PMID:16988931 More... RGD:10401078 RGD:2289921 NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 disease_progression ISO DNA:amplification
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm
RGD
ClinVar
PMID:18182100 PMID:26619011 RGD:2289942 NCBI chrNW_004955458:3,683,126...3,701,752
Ensembl chrNW_004955458:3,683,126...3,702,978
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 susceptibility
disease_progression
ISO DNA:polymorphism:promoter:-782G>T (human)
DNA:amplification
mRNA:increased expression:breast
RGD PMID:17465220 PMID:18094435 PMID:18182100 RGD:2289942 RGD:2289949 RGD:2289977 NCBI chrNW_004955457:3,177,905...4,236,152
Ensembl chrNW_004955457:3,177,991...4,228,558
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit disease_progression ISO DNA:SNP:exon:p.K751Q (rs13181) (human) RGD PMID:19307510 RGD:11340203 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Esr1 estrogen receptor 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:24185510 PMID:24185512 PMID:24398047 NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353
JBrowse link
G Esr2 estrogen receptor 2 disease_progression
treatment
ISO mRNA, protein:increased expression:breast
CTD Direct Evidence: marker/mechanism|therapeutic
RGD
CTD
PMID:17132221 PMID:18234277 PMID:19434490 PMID:19548127 PMID:24047421 RGD:2290017 RGD:8552984 NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946
JBrowse link
G Esrra estrogen related receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:20961995 NCBI chrNW_004955422:20,768,450...20,775,205
Ensembl chrNW_004955422:20,768,450...20,787,451
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955407:37,747,152...37,764,170
Ensembl chrNW_004955407:37,747,000...37,765,237
JBrowse link
G Etv4 ETS variant transcription factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21679465 NCBI chrNW_004955451:16,965,404...16,976,503
Ensembl chrNW_004955451:16,965,125...16,976,127
JBrowse link
G Evl Enah/Vasp-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955438:21,198,761...21,298,657
Ensembl chrNW_004955438:21,198,763...21,298,657
JBrowse link
G Exo1 exonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004955406:10,248,981...10,276,207
Ensembl chrNW_004955406:10,245,886...10,275,522
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:21903722 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G F3 coagulation factor III, tissue factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:15562024 NCBI chrNW_004955423:254,060...264,448
Ensembl chrNW_004955423:254,189...264,159
JBrowse link
G Fabp7 fatty acid binding protein 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22322885 NCBI chrNW_004955436:4,642,584...4,646,172
Ensembl chrNW_004955436:4,642,584...4,646,172
JBrowse link
G Faslg Fas ligand susceptibility ISO protein:increased expression:breast
DNA:polymorphism:promoter:-844T>C
RGD PMID:10640988 PMID:17183065 RGD:2290054 RGD:2290134 NCBI chrNW_004955406:13,098,479...13,107,045
Ensembl chrNW_004955406:13,098,662...13,107,389
JBrowse link
G Fasn fatty acid synthase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17089011 PMID:18281512 NCBI chrNW_004955506:1,063,002...1,079,939
Ensembl chrNW_004955506:1,063,002...1,079,939
JBrowse link
G Fbl fibrillarin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955578:1,176,713...1,186,873
Ensembl chrNW_004955578:1,176,713...1,186,873
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:26619011 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Fgd5 FYVE, RhoGEF and PH domain containing 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955429:17,297,123...17,367,365
Ensembl chrNW_004955429:17,304,992...17,366,051
JBrowse link
G Fgf10 fibroblast growth factor 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18438407 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199
JBrowse link
G Fgf3 fibroblast growth factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21936542 NCBI chrNW_004955422:16,333,363...16,339,853
Ensembl chrNW_004955422:16,333,363...16,339,853
JBrowse link
G Fgf4 fibroblast growth factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21936542 NCBI chrNW_004955422:16,362,418...16,364,126 JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20179196 PMID:21936542 NCBI chrNW_004955463:14,013,247...14,064,354
Ensembl chrNW_004955463:14,013,247...14,064,111
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:17525745 PMID:18552176 PMID:22238366 PMID:23002168 PMID:23908597 More... NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:19946327 NCBI chrNW_004955408:29,370,480...29,383,531
Ensembl chrNW_004955408:29,370,468...29,383,971
JBrowse link
G Fhit fragile histidine triad diadenosine triphosphatase severity ISO lobular breast cancer; DNA:loss of heterozygosity::LOH within the FHIT gene in 16% of cases, significant association between LOH and reduced or negative expression
protein:decreased expression:breast:frequency increases from 0% in nonproliferative benign breast disease to 41% in invasive carcinoma
RGD PMID:10930803 PMID:17164758 RGD:2289872 RGD:2289898 NCBI chrNW_004955430:221,518...508,094 JBrowse link
G Fhl2 four and a half LIM domains 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17682292 NCBI chrNW_004955470:10,240,117...10,286,117
Ensembl chrNW_004955470:10,240,117...10,286,289
JBrowse link
G Fkbpl FKBP prolyl isomerase like ISO CTD Direct Evidence: therapeutic CTD PMID:20103631 NCBI chrNW_004955437:592,098...594,244
Ensembl chrNW_004955437:592,098...594,244
JBrowse link
G Flacc1 flagellum associated containing coiled-coil domains 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955403:264,969...321,370
Ensembl chrNW_004955403:264,980...321,484
JBrowse link
G Flna filamin A ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004955580:874,233...895,172
Ensembl chrNW_004955580:874,233...895,232
JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 severity ISO protein:increased expression, alternative form:tumor:increased expression of soluble form, significantly correlated with VEGF expression
protein:altered expression:tumor:positive expression improves survival rate after neoadjuvant chemotherapy, negative expression associated with poor prognosis
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:11857378 PMID:12910290 PMID:23146280 PMID:26124351 RGD:2289961 RGD:2289962 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472
JBrowse link
G Fn1 fibronectin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24014025 NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO mRNA, protein:increased expression:breast RGD PMID:17254320 RGD:2293756 NCBI chrNW_004955422:19,425,741...19,431,801
Ensembl chrNW_004955422:19,423,591...19,433,885
JBrowse link
G Foxa1 forkhead box A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23001124 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461
JBrowse link
G Foxm1 forkhead box M1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20208560 NCBI chrNW_004955429:18,392,545...18,405,254
Ensembl chrNW_004955429:18,393,470...18,405,254
JBrowse link
G Foxp3 forkhead box P3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17570480 NCBI chrNW_004955543:731,707...742,606
Ensembl chrNW_004955543:731,707...742,606
JBrowse link
G Foxq1 forkhead box Q1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27129776 NCBI chrNW_004955465:11,802,947...11,803,381 JBrowse link
G Fst follistatin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955446:13,925,833...13,932,104
Ensembl chrNW_004955446:13,925,776...13,932,104
JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23535733 NCBI chrNW_004955433:11,424,069...11,834,955
Ensembl chrNW_004955433:11,424,176...11,813,771
JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 ISO ClinVar Annotator: match by term: Breast tumor ClinVar PMID:25741868 PMID:28492532 PMID:29546405 NCBI chrNW_004955419:26,760,500...26,788,933
Ensembl chrNW_004955419:26,760,500...26,788,933
JBrowse link
G Galnt16 polypeptide N-acetylgalactosaminyltransferase 16 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955466:1,016,580...1,044,077
Ensembl chrNW_004955466:1,016,535...1,044,082
JBrowse link
G Gdf10 growth differentiation factor 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23180569 NCBI chrNW_004955556:2,185,121...2,195,150
Ensembl chrNW_004955556:2,185,121...2,196,502
JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955469:552,850...590,792
Ensembl chrNW_004955469:552,677...592,137
JBrowse link
G Gja1 gap junction protein alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29180066 NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095
JBrowse link
G Gnai2 G protein subunit alpha i2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004955532:2,059,038...2,079,120
Ensembl chrNW_004955532:2,059,038...2,079,957
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24440569 NCBI chrNW_004955460:8,790,798...8,794,902
Ensembl chrNW_004955460:8,790,798...8,794,902
JBrowse link
G Gpi glucose-6-phosphate isomerase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955468:3,980,999...4,007,553
Ensembl chrNW_004955468:3,980,999...4,008,652
JBrowse link
G Gpnmb glycoprotein nmb ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955410:25,554,279...25,583,368
Ensembl chrNW_004955410:25,553,973...25,582,500
JBrowse link
G Gpx1 glutathione peroxidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12810669 NCBI chrNW_004955532:1,298,336...1,298,830 JBrowse link
G Gpx2 glutathione peroxidase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18056462 NCBI chrNW_004955466:4,983,532...4,987,780
Ensembl chrNW_004955466:4,984,631...4,987,457
JBrowse link
G Gpx4 glutathione peroxidase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17634480 NCBI chrNW_004955495:6,767,969...6,772,256
Ensembl chrNW_004955495:6,767,975...6,772,178
JBrowse link
G Grb7 growth factor receptor bound protein 7 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:17426702 PMID:19075277 NCBI chrNW_004955451:14,463,032...14,470,392
Ensembl chrNW_004955451:14,464,541...14,474,070
JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955411:27,096,214...27,759,503
Ensembl chrNW_004955411:27,103,470...27,801,177
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:35639300 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25322848 NCBI chrNW_004955422:17,914,228...17,916,918
Ensembl chrNW_004955422:17,914,305...17,917,428
JBrowse link
G Gucy1a2 guanylate cyclase 1 soluble subunit alpha 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955412:9,218,029...9,480,333
Ensembl chrNW_004955412:9,225,305...9,480,206
JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955483:961,317...962,727
Ensembl chrNW_004955483:961,343...961,984
JBrowse link
G H6pd hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29295867 NCBI chrNW_004955486:4,088,354...4,115,077
Ensembl chrNW_004955486:4,022,306...4,115,077
JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955469:8,233,980...8,272,149
Ensembl chrNW_004955469:8,233,980...8,274,450
JBrowse link
G Hapln4 hyaluronan and proteoglycan link protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955524:2,594,097...2,598,855
Ensembl chrNW_004955524:2,595,426...2,598,861
JBrowse link
G Herc2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:16397024 PMID:23220880 NCBI chrNW_004955533:1,304,675...1,489,041
Ensembl chrNW_004955533:1,304,675...1,489,041
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 PMID:21036696 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955444:1,498,444...1,502,099
Ensembl chrNW_004955444:1,498,675...1,500,945
JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955436:7,060,930...7,070,610
Ensembl chrNW_004955436:7,060,930...7,070,030
JBrowse link
G Heyl hes related family bHLH transcription factor with YRPW motif like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955452:17,137,066...17,152,714
Ensembl chrNW_004955452:17,134,770...17,152,924
JBrowse link
G Hhex hematopoietically expressed homeobox ISO CTD Direct Evidence: marker/mechanism CTD PMID:16854221 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Hic1 HIC ZBTB transcriptional repressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20154726 NCBI chrNW_004955481:1,179,015...1,182,936
Ensembl chrNW_004955481:1,179,015...1,181,825
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha disease_progression ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:17245699 PMID:19064988 PMID:24349381 RGD:2293195 RGD:2306224 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Hmmr hyaluronan mediated motility receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:17922014 NCBI chrNW_004955408:16,865,066...16,895,918
Ensembl chrNW_004955408:16,865,175...16,898,328
JBrowse link
G Hmox1 heme oxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955468:668,177...683,540
Ensembl chrNW_004955468:670,559...683,540
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955452:3,318,536...3,354,725
Ensembl chrNW_004955452:3,315,133...3,355,508
JBrowse link
G Hoxb13 homeobox B13 disease_progression ISO CTD Direct Evidence: marker/mechanism
DNA:hypermethylation
CTD
RGD
PMID:17453342 PMID:19250546 PMID:24239177 RGD:2314726 RGD:2314727 NCBI chrNW_004955451:12,536,415...12,538,169
Ensembl chrNW_004955451:12,536,415...12,538,169
JBrowse link
G Hoxb9 homeobox B9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27182052 NCBI chrNW_004955451:12,616,465...12,616,926 JBrowse link
G Hoxd11 homeobox D11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chrNW_004955403:20,541,870...20,556,574 JBrowse link
G Hpse heparanase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16391819 NCBI chrNW_004955474:6,367,467...6,394,395
Ensembl chrNW_004955474:6,367,467...6,394,395
JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:1904555 PMID:2105486 PMID:3510078 PMID:11150980 PMID:12727991 More... NCBI chrNW_004955476:11,508,446...11,510,333
Ensembl chrNW_004955476:11,508,126...11,510,333
JBrowse link
G Hrg histidine rich glycoprotein ISO CTD Direct Evidence: marker/mechanism CTD PMID:19552798 NCBI chrNW_004955420:21,020,938...21,033,022
Ensembl chrNW_004955420:21,019,212...21,032,976
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955538:1,469,544...1,475,010
Ensembl chrNW_004955538:1,469,544...1,475,019
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO protein:increased expression RGD PMID:20957756 RGD:5686342 NCBI chrNW_004955419:3,055,420...3,060,208
Ensembl chrNW_004955419:3,055,420...3,062,131
JBrowse link
G Ibsp integrin binding sialoprotein ISO CTD Direct Evidence: marker/mechanism CTD PMID:24980816 NCBI chrNW_004955474:2,074,659...2,086,289
Ensembl chrNW_004955474:2,074,659...2,086,289
JBrowse link
G Icam5 intercellular adhesion molecule 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955495:1,575,669...1,583,904
Ensembl chrNW_004955495:1,575,669...1,583,910
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:18772396 PMID:19657110 PMID:19798509 PMID:19818334 PMID:20946881 More... NCBI chrNW_004955457:6,851,542...6,869,452
Ensembl chrNW_004955457:6,851,517...6,872,367
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004955536:2,944,770...2,955,829
Ensembl chrNW_004955536:2,943,611...2,955,829
JBrowse link
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:18608205 NCBI chrNW_004955434:23,301,623...23,302,304 JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:19446661 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G Igbp1 immunoglobulin binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21339737 NCBI chrNW_004955475:9,671,162...9,694,926 JBrowse link
G Igf1 insulin like growth factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520698 PMID:18398872 NCBI chrNW_004955405:37,505,830...37,582,152
Ensembl chrNW_004955405:37,512,201...37,582,152
JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21057462 NCBI chrNW_004955416:26,101,090...26,382,660
Ensembl chrNW_004955416:26,102,628...26,382,666
JBrowse link
G Igfbp5 insulin like growth factor binding protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20354179 NCBI chrNW_004955453:16,530,110...16,550,733
Ensembl chrNW_004955453:16,530,110...16,550,733
JBrowse link
G Igfbp7 insulin like growth factor binding protein 7 ISO CTD Direct Evidence: therapeutic CTD PMID:12592389 NCBI chrNW_004955447:14,048,834...14,110,264
Ensembl chrNW_004955447:14,047,732...14,108,414
JBrowse link
G Il10 interleukin 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29582634 NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779
JBrowse link
G Il13 interleukin 13 susceptibility
treatment
ISO DNA:SNPs, haplotypes:promoter, exon:-1512A>C, -1055C>T, 2044G>A (human) RGD PMID:17438063 PMID:18989750 RGD:8549503 RGD:8549557 NCBI chrNW_004955408:4,046,406...4,049,795 JBrowse link
G Il17a interleukin 17A treatment ISO associated with Arthritis, Experimental RGD PMID:24674692 RGD:9068440 NCBI chrNW_004955411:5,896,435...5,899,911
Ensembl chrNW_004955411:5,896,702...5,900,962
JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 PMID:28212736 NCBI chrNW_004955470:1,486,936...1,491,888
Ensembl chrNW_004955470:1,486,967...1,491,947
JBrowse link
G Il2 interleukin 2 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004955428:18,163,010...18,168,157
Ensembl chrNW_004955428:18,162,467...18,168,265
JBrowse link
G Il24 interleukin 24 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:16298037 PMID:21671747 NCBI chrNW_004955406:42,431,845...42,437,392
Ensembl chrNW_004955406:42,432,795...42,437,016
JBrowse link
G Il6 interleukin 6 susceptibility ISO associated with obesity;DNA:polymorphism:promoter:-174G>C(human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:11426023 PMID:16298037 PMID:17516992 PMID:19435922 PMID:19446661 RGD:7829718 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Il7r interleukin 7 receptor ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004955426:20,785,896...20,818,512
Ensembl chrNW_004955426:20,787,471...20,818,577
JBrowse link
G Itsn2 intersectin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004955469:6,358,131...6,493,956
Ensembl chrNW_004955469:6,358,131...6,493,956
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955415:20,490,414...20,526,068
Ensembl chrNW_004955415:20,490,414...20,527,917
JBrowse link
G Jag2 jagged canonical Notch ligand 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955538:3,421,685...3,433,829
Ensembl chrNW_004955538:3,421,685...3,433,842
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30619488 NCBI chrNW_004955506:5,577,735...5,588,307
Ensembl chrNW_004955506:5,577,437...5,588,372
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Jup junction plakoglobin no_association
severity
ISO Protein::tumor:normal expression in both T1 and T2 tumors
DNA:loss of heterozygosity:tumor:in individuals carrying the BRCA1 predisposition
protein:increased expression:tumor, cell membrane:significantly associated with relapse-free and overall survival (p=0.029 and 0.020, respectively)
RGD PMID:7604000 PMID:11276001 PMID:17008277 RGD:2291873 RGD:2291881 RGD:2291883 NCBI chrNW_004955451:15,993,055...16,004,152
Ensembl chrNW_004955451:15,989,180...16,004,155
JBrowse link
G Kat6a lysine acetyltransferase 6A severity ISO mRNA:increased expression:breast (human) RGD PMID:25220592 RGD:9590335 NCBI chrNW_004955536:900,198...1,015,520
Ensembl chrNW_004955536:900,198...1,015,520
JBrowse link
G Kcnh1 potassium voltage-gated channel subfamily H member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520698 NCBI chrNW_004955489:1,176,615...1,549,880
Ensembl chrNW_004955489:1,179,053...1,545,355
JBrowse link
G Kdm4c lysine demethylase 4C severity ISO human gene in a mouse model
mRNA:increased expression:breast (human)
RGD PMID:19784073 PMID:23129632 RGD:9587479 RGD:9587482 NCBI chrNW_004955434:10,646,524...11,000,589
Ensembl chrNW_004955434:10,685,704...11,000,644
JBrowse link
G Kdm5b lysine demethylase 5B severity ISO mRNA:increased expression:breast (human) RGD PMID:10336460 RGD:9587743 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088
JBrowse link
G Kdr kinase insert domain receptor treatment ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:14511401 PMID:20135347 PMID:35917945 RGD:8551844 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
JBrowse link
G Kiss1 KiSS-1 metastasis suppressor severity
disease_progression
ISO mRNA:increased expression:tumor:high levels of both KISS1 and KISS1R in ERalpha+ tumors treated with tamoxifen associated with shorter relapse-free survival
mRNA, protein:increased expression:tumor:higher in tumor vs normal tissue, significantly higher in node-positive vs node-negative (p=0.02)
RGD PMID:16320113 PMID:17914099 RGD:2292123 RGD:2292135 NCBI chrNW_004955406:40,043,139...40,045,973
Ensembl chrNW_004955406:40,043,133...40,045,386
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase severity
disease_progression
ISO protein:expression:tumor:expression correlated with poor overall survival (p=0.051) and with high grade (p=0.019)
protein:increased expression:tumor:significantly increased vs fibroadenoma (p=0.035)
protein:decreased expression:tumor:mean immunoreactive score = 5.90 in normal breast, 0.90 in malignant tissue (p=0.001)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:14669790 PMID:17848740 PMID:17867595 PMID:20941507 PMID:21388062 RGD:12910741 RGD:2292423 RGD:2292424 RGD:2292425 NCBI chrNW_004955447:16,149,014...16,226,151
Ensembl chrNW_004955447:16,148,605...16,226,734
JBrowse link
G Klhdc10 kelch domain containing 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955479:10,743,658...10,826,129
Ensembl chrNW_004955479:10,743,661...10,799,845
JBrowse link
G Klhdc7a kelch domain containing 7A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955527:689,631...696,250 JBrowse link
G Klk10 kallikrein related peptidase 10 severity ISO CTD Direct Evidence: marker/mechanism
DNA:hypermethylation:exon (human)
RGD
CTD
PMID:12087468 PMID:16800735 PMID:17585892 PMID:19150938 RGD:2314845 RGD:2314847 RGD:2314850 NCBI chrNW_004955558:1,466,162...1,471,112
Ensembl chrNW_004955558:1,466,717...1,471,368
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004955500:7,850,782...7,891,703
Ensembl chrNW_004955500:7,853,292...7,886,067
JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO breast adenocarcinoma cell line, OMIM:114480 DNA:point_mutation:CDS:amino acid G13D
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:3627975 RGD:1600466 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G Krt18 keratin 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20061804 PMID:25330770 NCBI chrNW_004955458:227,017...230,752
Ensembl chrNW_004955458:226,805...232,728
JBrowse link
G Krt5 keratin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955547:2,926,154...2,931,954
Ensembl chrNW_004955547:2,773,523...2,932,609
JBrowse link
G Krt8 keratin 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20061804 NCBI chrNW_004955458:178,954...190,310 JBrowse link
G L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955436:10,900,521...11,014,259
Ensembl chrNW_004955436:10,920,075...11,013,520
JBrowse link
G Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chrNW_004955435:13,896,320...13,900,742
Ensembl chrNW_004955435:13,896,320...13,900,754
JBrowse link
G Lbx1 ladybird homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19651985 NCBI chrNW_004955485:9,003,329...9,005,987
Ensembl chrNW_004955485:9,003,329...9,005,989
JBrowse link
G Ldhal6b lactate dehydrogenase A like 6B ISO CTD Direct Evidence: marker/mechanism CTD PMID:20562527 NCBI chrNW_004955439:4,954,208...4,956,660 JBrowse link
G Ldhb lactate dehydrogenase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23437403 NCBI chrNW_004955413:17,264,337...17,283,530
Ensembl chrNW_004955413:17,261,118...17,283,593
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27811057 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698
JBrowse link
G Lep leptin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21353530 PMID:35191604 NCBI chrNW_004955479:9,266,604...9,276,568
Ensembl chrNW_004955479:9,274,516...9,279,472
JBrowse link
G Lepr leptin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21353530 NCBI chrNW_004955423:25,108,897...25,185,315
Ensembl chrNW_004955423:25,111,266...25,185,407
JBrowse link
G Lgr6 leucine rich repeat containing G protein-coupled receptor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:23535733 NCBI chrNW_004955406:38,274,998...38,381,677
Ensembl chrNW_004955406:38,274,958...38,383,822
JBrowse link
G Limd2 LIM domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 NCBI chrNW_004955478:8,120,405...8,121,826
Ensembl chrNW_004955478:8,120,156...8,121,826
JBrowse link
G Llgl1 LLGL scribble cell polarity complex component 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955478:11,075,399...11,089,818
Ensembl chrNW_004955478:11,075,399...11,089,839
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004955553:2,377,640...2,415,152
Ensembl chrNW_004955553:2,378,101...2,415,152
JBrowse link
G LOC102009223 cytochrome P450 1B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17297925 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131
JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16792888 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
G LOC102011010 steroid 17-alpha-hydroxylase/17,20 lyase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19913079 PMID:34426286 NCBI chrNW_004955485:7,615,132...7,652,899
Ensembl chrNW_004955485:7,645,363...7,650,658
JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial ISO CTD Direct Evidence: marker/mechanism CTD PMID:16280049 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G LOC102023780 aromatase ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 PMID:19639193 PMID:23342035 PMID:28112739 PMID:29701941 More... NCBI chrNW_004955409:3,198,622...3,313,072
Ensembl chrNW_004955409:3,266,233...3,313,142
JBrowse link
G LOC102025775 histone H2AX ISO CTD Direct Evidence: marker/mechanism CTD PMID:18925433 PMID:21463514 NCBI chrNW_004955412:20,203,173...20,204,714
Ensembl chrNW_004955412:20,203,772...20,204,203
JBrowse link
G Loxl2 lysyl oxidase like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19330836 PMID:24014025 NCBI chrNW_004955403:46,503,226...46,583,807
Ensembl chrNW_004955403:46,504,440...46,584,016
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955419:16,190,109...16,324,702
Ensembl chrNW_004955419:16,191,244...16,325,602
JBrowse link
G Lrrc3b leucine rich repeat containing 3B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955430:18,351,763...18,440,120
Ensembl chrNW_004955430:18,351,763...18,440,120
JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:1904555 PMID:2105486 PMID:3510078 PMID:11150980 PMID:12727991 More... NCBI chrNW_004955476:11,493,299...11,507,022
Ensembl chrNW_004955476:11,491,688...11,506,700
JBrowse link
G Lsp1 lymphocyte specific protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 PMID:20453838 NCBI chrNW_004955422:13,664,594...13,697,682
Ensembl chrNW_004955422:13,664,129...13,700,126
JBrowse link
G Macir macrophage immunometabolism regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955418:10,752,250...10,767,791
Ensembl chrNW_004955418:10,752,250...10,767,791
JBrowse link
G Mad1l1 mitotic arrest deficient 1 like 1 ISO RGD PMID:11423979 RGD:1599865 NCBI chrNW_004955460:9,340,728...9,672,478
Ensembl chrNW_004955460:9,340,681...9,672,134
JBrowse link
G Mal mal, T cell differentiation protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:19208741 NCBI chrNW_004955470:3,372,577...3,396,868
Ensembl chrNW_004955470:3,372,577...3,398,836
JBrowse link
G Man2c1 mannosidase alpha class 2C member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955450:2,872,577...2,882,743
Ensembl chrNW_004955450:2,872,580...2,882,743
JBrowse link
G Map2k4 mitogen-activated protein kinase kinase 4 susceptibility ISO DNA:SNP, haplotype RGD PMID:19404734 RGD:7495825 NCBI chrNW_004955467:5,188,036...5,295,570
Ensembl chrNW_004955467:5,187,356...5,307,692
JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21317887 NCBI chrNW_004955563:1,352,638...1,361,598
Ensembl chrNW_004955563:1,352,638...1,361,598
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 NCBI chrNW_004955446:11,022,091...11,090,136
Ensembl chrNW_004955446:11,021,971...11,090,136
JBrowse link
G Mcph1 microcephalin 1 severity ISO protein:decreased expression:breast (human) RGD PMID:20632086 RGD:9589027 NCBI chrNW_004955403:54,143,454...54,273,201 JBrowse link
G Mdm2 MDM2 proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:26229107 NCBI chrNW_004955458:15,264,028...15,287,290
Ensembl chrNW_004955458:15,263,739...15,286,808
JBrowse link
G Mdm4 MDM4 regulator of p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23535733 NCBI chrNW_004955406:40,346,617...40,387,977
Ensembl chrNW_004955406:40,346,588...40,387,977
JBrowse link
G Mecom MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:23770046 NCBI chrNW_004955448:18,259,847...18,542,085
Ensembl chrNW_004955448:18,259,083...18,439,646
JBrowse link
G Med12 mediator complex subunit 12 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:26619011 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053
JBrowse link
G Med28 mediator complex subunit 28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21942447 NCBI chrNW_004955480:6,554,147...6,560,916
Ensembl chrNW_004955480:6,553,235...6,560,916
JBrowse link
G Meis1 Meis homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chrNW_004955424:18,060,499...18,190,425
Ensembl chrNW_004955424:18,058,004...18,190,453
JBrowse link
G Mettl6 methyltransferase 6, tRNA N3-cytidine ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955430:1,910,557...1,933,249
Ensembl chrNW_004955430:1,909,404...1,933,239
JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:21127199 NCBI chrNW_004955416:16,092,263...16,103,097
Ensembl chrNW_004955416:16,091,684...16,103,768
JBrowse link
G Mif macrophage migration inhibitory factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19602265 NCBI chrNW_004955455:8,367,566...8,368,460
Ensembl chrNW_004955455:8,367,566...8,368,460
JBrowse link
G Mki67 marker of proliferation Ki-67 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15706428 PMID:18768436 PMID:19436038 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Mme membrane metalloendopeptidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23063927 NCBI chrNW_004955448:6,193,113...6,311,666
Ensembl chrNW_004955448:6,226,059...6,314,949
JBrowse link
G Mmp13 matrix metallopeptidase 13 disease_progression ISO protein:increased expression:tumor:positive correlation with lymph node metastases (p<0.001), negative correlation with overall survival (p=0.0008) RGD PMID:18373849 RGD:2293603 NCBI chrNW_004955412:6,106,994...6,118,760
Ensembl chrNW_004955412:6,106,994...6,118,760
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24014025 NCBI chrNW_004955409:37,438,924...37,448,704
Ensembl chrNW_004955409:37,440,541...37,448,437
JBrowse link
G Mmp2 matrix metallopeptidase 2 disease_progression ISO protein:increased expression:breast
protein:decreased expression:serum
DNA:SNP:promoter:-1306C>T (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:15538048 PMID:16949931 PMID:17642161 PMID:17851253 PMID:18398872 More... RGD:2290392 RGD:2290401 RGD:8547818 RGD:8655999 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp9 matrix metallopeptidase 9 disease_progression
no_association
ISO protein:increased expression:serum
DNA:SNPs, haplotype:rs17577, rs3787268 (human)
DNA:SNPs:promoter, CDS:rs3918241, rs2274756 (p.R668Q) (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:15538048 PMID:18172859 PMID:19617202 PMID:20725776 PMID:21151179 More... RGD:2290343 RGD:8547818 RGD:8547827 RGD:8547837 RGD:8547839 RGD:8547893 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Mrpl13 mitochondrial ribosomal protein L13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955417:25,792,315...25,824,163
Ensembl chrNW_004955417:25,792,163...25,824,618
JBrowse link
G Mrpl19 mitochondrial ribosomal protein L19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955424:10,207,091...10,213,685
Ensembl chrNW_004955424:10,207,232...10,213,642
JBrowse link
G Mrpl9 mitochondrial ribosomal protein L9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955589:662,713...666,488
Ensembl chrNW_004955589:662,713...666,488
JBrowse link
G Mrps22 mitochondrial ribosomal protein S22 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955508:6,232,514...6,246,593
Ensembl chrNW_004955508:6,232,514...6,246,633
JBrowse link
G Mrps23 mitochondrial ribosomal protein S23 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955451:5,134,865...5,143,872
Ensembl chrNW_004955451:5,134,865...5,143,036
JBrowse link
G Mrps28 mitochondrial ribosomal protein S28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955444:1,293,707...1,387,858 JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955553:2,124,988...2,128,483
Ensembl chrNW_004955553:2,124,988...2,132,667
JBrowse link
G Mst1 macrophage stimulating 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004955532:1,590,685...1,595,655
Ensembl chrNW_004955532:1,590,755...1,595,148
JBrowse link
G Mtdh metadherin ISO CTD Direct Evidence: marker/mechanism CTD PMID:19111877 NCBI chrNW_004955417:13,479,398...13,540,706
Ensembl chrNW_004955417:13,479,762...13,537,950
JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16777985 PMID:17595805 PMID:28114181 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:22729223 PMID:24631838 PMID:25599672 PMID:25741868 PMID:25799227 More... NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17595805 NCBI chrNW_004955492:3,372,915...3,474,173
Ensembl chrNW_004955492:3,376,512...3,474,180
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor treatment ISO mRNA:increased expression:mammary gland (mouse) RGD PMID:20820192 PMID:22439659 RGD:7207428 RGD:7241009 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G Myh9 myosin heavy chain 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chrNW_004955413:22,881,759...22,972,182
Ensembl chrNW_004955413:22,881,045...22,972,450
JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chrNW_004955469:6,676,780...6,892,587
Ensembl chrNW_004955469:6,794,821...6,892,566
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chrNW_004955444:9,313,748...9,587,109
Ensembl chrNW_004955444:9,313,447...9,584,913
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20332317 NCBI chrNW_004955445:10,020,916...10,085,318
Ensembl chrNW_004955445:10,024,308...10,052,472
JBrowse link
G Ncor1 nuclear receptor corepressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19781322 NCBI chrNW_004955467:1,408,292...1,568,539
Ensembl chrNW_004955467:1,409,281...1,546,842
JBrowse link
G Ndrg1 N-myc downstream regulated 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15341671 NCBI chrNW_004955461:7,787,068...7,836,380
Ensembl chrNW_004955461:7,786,850...7,836,922
JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955422:713,370...717,926
Ensembl chrNW_004955422:709,784...717,926
JBrowse link
G Nectin2 nectin cell adhesion molecule 2 ISO CTD Direct Evidence: therapeutic CTD PMID:23758976 NCBI chrNW_004955555:1,959,702...1,985,679 JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32621833 NCBI chrNW_004955403:19,510,122...19,536,428
Ensembl chrNW_004955403:19,532,103...19,535,944
JBrowse link
G Nfkbia NFKB inhibitor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955409:25,691,673...25,695,151
Ensembl chrNW_004955409:25,691,534...25,697,520
JBrowse link
G Nisch nischarin ISO CTD Direct Evidence: marker/mechanism CTD PMID:29912916 NCBI chrNW_004955430:2,443,029...2,488,267
Ensembl chrNW_004955430:2,443,029...2,491,123
JBrowse link
G Nmbr neuromedin B receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:24349381 NCBI chrNW_004955436:18,116,274...18,127,045
Ensembl chrNW_004955436:18,116,274...18,127,045
JBrowse link
G Nop9 NOP9 nucleolar protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955409:35,996,918...36,002,460
Ensembl chrNW_004955409:35,992,160...36,002,459
JBrowse link
G Nos2 nitric oxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15631943 NCBI chrNW_004955481:5,197,957...5,232,406
Ensembl chrNW_004955481:5,201,234...5,231,961
JBrowse link
G Nos3 nitric oxide synthase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15375496 PMID:19671875 NCBI chrNW_004955491:5,438,228...5,457,308
Ensembl chrNW_004955491:5,438,010...5,460,814
JBrowse link
G Notch1 notch receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 PMID:21679465 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Notch2 notch receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173
JBrowse link
G Notch3 notch receptor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 NCBI chrNW_004955495:8,012,370...8,048,616
Ensembl chrNW_004955495:8,012,502...8,047,710
JBrowse link
G Notch4 notch receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21036696 PMID:21679465 NCBI chrNW_004955437:658,076...679,338 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18511948 NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604
JBrowse link
G Nqo2 N-ribosyldihydronicotinamide:quinone dehydrogenase 2 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955465:10,186,928...10,200,098
Ensembl chrNW_004955465:10,186,928...10,200,237
JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chrNW_004955418:18,615,548...18,622,984
Ensembl chrNW_004955418:18,614,995...18,624,584
JBrowse link
G Nr2f6 nuclear receptor subfamily 2 group F member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chrNW_004955524:961,232...965,012 JBrowse link
G Nrcam neuronal cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955410:12,437,248...12,518,083
Ensembl chrNW_004955410:12,437,248...12,518,075
JBrowse link
G Nrg1 neuregulin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19617202 NCBI chrNW_004955463:8,009,436...9,037,116
Ensembl chrNW_004955463:8,009,530...9,037,116
JBrowse link
G Nrip1 nuclear receptor interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22267197 NCBI chrNW_004955407:16,740,253...16,820,297
Ensembl chrNW_004955407:16,740,253...16,820,297
JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24874954 NCBI chrNW_004955514:1,084,522...1,162,624
Ensembl chrNW_004955514:1,069,085...1,162,624
JBrowse link
G Nsun6 NOP2/Sun RNA methyltransferase 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004955429:9,594,964...9,639,614
Ensembl chrNW_004955429:9,594,958...9,639,614
JBrowse link
G Nudt17 nudix hydrolase 17 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955568:236,943...240,273
Ensembl chrNW_004955568:236,943...240,271
JBrowse link
G Nudt2 nudix hydrolase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20533549 NCBI chrNW_004955472:1,760,046...1,774,539
Ensembl chrNW_004955472:1,759,900...1,774,539
JBrowse link
G Ocln occludin ISO CTD Direct Evidence: marker/mechanism CTD PMID:17459053 PMID:24014025 NCBI chrNW_004955575:163,646...210,379 JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase severity ISO RGD PMID:24214978 RGD:9590192 NCBI chrNW_004955475:11,062,258...11,112,252
Ensembl chrNW_004955475:11,062,076...11,114,169
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20179234 NCBI chrNW_004955414:14,365,325...14,447,470
Ensembl chrNW_004955414:14,365,157...14,450,611
JBrowse link
G Pak2 p21 (RAC1) activated kinase 2 ISO RGD PMID:22886747 RGD:7775026 NCBI chrNW_004955420:12,893,760...12,930,955
Ensembl chrNW_004955420:12,892,845...12,930,955
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:17200668 PMID:17200671 PMID:17200672 PMID:24033266 PMID:24136930 More... NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781
JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20941507 NCBI chrNW_004955489:520,875...557,609
Ensembl chrNW_004955489:520,875...557,615
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:35639300 NCBI chrNW_004955424:15,045,642...15,047,184
Ensembl chrNW_004955424:15,046,011...15,047,081
JBrowse link
G Pcna proliferating cell nuclear antigen disease_progression ISO RGD PMID:8098267 RGD:2315013 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Pde2a phosphodiesterase 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:12972520 NCBI chrNW_004955414:18,765,591...18,826,717
Ensembl chrNW_004955414:18,735,822...18,827,236
JBrowse link
G Pdgfa platelet derived growth factor subunit A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955460:8,328,400...8,346,755
Ensembl chrNW_004955460:8,326,891...8,346,550
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO RGD PMID:17050049 RGD:2292176 NCBI chrNW_004955415:4,365,848...4,403,317
Ensembl chrNW_004955415:4,365,743...4,403,587
JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24739482 NCBI chrNW_004955442:14,685,089...14,772,870
Ensembl chrNW_004955442:14,685,153...14,772,870
JBrowse link
G Pdzk1 PDZ domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004955568:405,697...436,346
Ensembl chrNW_004955568:386,904...436,346
JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:21890879 RGD:6771361 NCBI chrNW_004955478:7,448,584...7,531,860
Ensembl chrNW_004955478:7,478,492...7,531,188
JBrowse link
G Per3 period circadian regulator 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20625127 NCBI chrNW_004955486:5,058,602...5,101,480
Ensembl chrNW_004955486:5,059,773...5,101,637
JBrowse link
G Pgr progesterone receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19436038 PMID:21501481 NCBI chrNW_004955412:4,643,839...4,693,478 JBrowse link
G Phb1 prohibitin 1 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955451:12,110,290...12,119,870
Ensembl chrNW_004955451:12,110,290...12,120,124
JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21804546 NCBI chrNW_004955435:22,757,473...22,803,123
Ensembl chrNW_004955435:22,757,454...22,803,123
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO mRNA:increased expression:mammary tumor (mouse) RGD PMID:17699716 RGD:4108502 NCBI chrNW_004955446:1,020,707...1,098,327
Ensembl chrNW_004955446:1,020,043...1,098,820
JBrowse link
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955437:5,940,825...5,945,367
Ensembl chrNW_004955437:5,942,106...5,945,431
JBrowse link
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19671742 PMID:19681904 PMID:32621833 NCBI chrNW_004955495:1,250,557...1,261,617
Ensembl chrNW_004955495:1,250,453...1,266,235
JBrowse link
G Pla2g4a phospholipase A2 group IVA ISO CTD Direct Evidence: marker/mechanism CTD PMID:21119660 NCBI chrNW_004955406:25,257,361...25,392,079
Ensembl chrNW_004955406:25,257,355...25,394,206
JBrowse link
G Plekhd1 pleckstrin homology and coiled-coil domain containing D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955466:853,902...878,813
Ensembl chrNW_004955466:852,958...878,814
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:23709753 PMID:24033266 PMID:25741868 PMID:27146957 PMID:28466842 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:23263490 PMID:23447401 PMID:24525744 PMID:24844595 PMID:25224212 More... NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Ppargc1b PPARG coactivator 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:20961995 NCBI chrNW_004955415:4,638,057...4,756,885
Ensembl chrNW_004955415:4,644,998...4,757,093
JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955451:1,878,110...1,915,794
Ensembl chrNW_004955451:1,878,629...1,915,654
JBrowse link
G Ppp1r12b protein phosphatase 1 regulatory subunit 12B ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chrNW_004955406:38,405,297...38,636,503
Ensembl chrNW_004955406:38,405,535...38,629,688
JBrowse link
G Ppp2r1a protein phosphatase 2 scaffold subunit Aalpha ISO ClinVar Annotator: match by term: Breast Neoplasms ClinVar PMID:25741868 PMID:26168268 PMID:26619011 PMID:28492532 PMID:31687265 More... NCBI chrNW_004955558:381,794...410,485
Ensembl chrNW_004955558:381,794...410,485
JBrowse link
G Prc1 protein regulator of cytokinesis 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chrNW_004955416:15,023,620...15,045,958
Ensembl chrNW_004955416:15,023,620...15,045,958
JBrowse link
G Prkca protein kinase C alpha ISO protein:decreased expression:breast RGD PMID:9474241 PMID:15454252 PMID:17965220 RGD:2292446 RGD:2292458 RGD:2292463 NCBI chrNW_004955478:5,686,639...6,090,356
Ensembl chrNW_004955478:5,686,640...6,083,967
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:1336932 PMID:1945792 PMID:9140396 PMID:9241266 PMID:9259288 More... NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
G Ptges prostaglandin E synthase ISO protein:increased expression:breast RGD PMID:16353170 RGD:2300083 NCBI chrNW_004955445:10,053,745...10,056,981 JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18488158 NCBI chrNW_004955419:5,678,750...5,699,305
Ensembl chrNW_004955419:5,678,694...5,699,305
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 susceptibility ISO mRNA:decreased expression:breast
mRNA, protein:increased expression:breast
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:14605950 PMID:16127422 PMID:16870006 PMID:17285134 PMID:18334709 More... RGD:2300120 RGD:2300129 RGD:2300210 NCBI chrNW_004955406:25,077,988...25,086,259
Ensembl chrNW_004955406:25,079,945...25,086,171
JBrowse link
G Pthlh parathyroid hormone like hormone ISO CTD Direct Evidence: marker/mechanism CTD PMID:22267197 NCBI chrNW_004955505:6,834,533...6,846,909
Ensembl chrNW_004955505:6,834,533...6,847,335
JBrowse link
G Ptk2 protein tyrosine kinase 2 ISO protein:increased expression:breast
DNA:amplification
RGD PMID:16136050 PMID:16457699 RGD:2292558 RGD:2292559 NCBI chrNW_004955461:14,337,914...14,622,779
Ensembl chrNW_004955461:14,337,914...14,556,931
JBrowse link
G Ptprd protein tyrosine phosphatase receptor type D ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955434:12,033,825...14,132,636
Ensembl chrNW_004955434:12,031,420...12,428,774
JBrowse link
G Rad50 RAD50 double strand break repair protein treatment ISO human gene in a rat model
DNA:deletion, splicing error::687delT, increased frequency in Finnish patients (8/317, p=0.008), possibly a founder mutation
RGD PMID:11373271 PMID:16474176 RGD:2300220 RGD:9831192 NCBI chrNW_004955408:3,953,801...4,035,494
Ensembl chrNW_004955408:3,953,800...4,035,494
JBrowse link
G Rad51 RAD51 recombinase ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628
JBrowse link
G Rad51b RAD51 paralog B ISO CTD Direct Evidence: marker/mechanism CTD PMID:19330030 NCBI chrNW_004955466:1,686,472...2,388,146
Ensembl chrNW_004955466:2,137,192...2,381,450
JBrowse link
G Rad51c RAD51 paralog C ISO CTD Direct Evidence: marker/mechanism CTD PMID:20400964 PMID:28825726 NCBI chrNW_004955451:4,053,195...4,178,226
Ensembl chrNW_004955451:4,145,226...4,178,487
JBrowse link
G Rad54l RAD54 like ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955464:11,996,512...12,033,525
Ensembl chrNW_004955464:11,996,512...12,033,490
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: therapeutic CTD PMID:12432273 NCBI chrNW_004955429:17,980,956...18,049,723
Ensembl chrNW_004955429:18,025,932...18,049,723
JBrowse link
G Ralyl RALY RNA binding protein like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955417:2,123,050...2,747,906
Ensembl chrNW_004955417:2,409,841...2,747,944
JBrowse link
G Rara retinoic acid receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134
JBrowse link
G Rarb retinoic acid receptor beta ISO CTD Direct Evidence: therapeutic CTD PMID:16255778 NCBI chrNW_004955430:17,067,536...17,457,558
Ensembl chrNW_004955430:17,295,174...17,460,045
JBrowse link
G Rb1 RB transcriptional corepressor 1 disease_progression ISO allelic loss
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:1567185 PMID:11108660 PMID:14672398 PMID:19234134 PMID:20948315 RGD:2291991 RGD:9698451 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576
JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955454:12,201,566...12,257,383
Ensembl chrNW_004955454:12,200,750...12,257,389
JBrowse link
G Rbm3 RNA binding motif protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19734850 NCBI chrNW_004955543:166,891...173,987
Ensembl chrNW_004955543:166,891...170,488
JBrowse link
G Rbp4 retinol binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:35191604 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584
JBrowse link
G Rccd1 RCC1 domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955416:15,013,595...15,020,038
Ensembl chrNW_004955416:15,014,340...15,019,173
JBrowse link
G Recql RecQ like helicase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25915596 NCBI chrNW_004955413:17,115,443...17,148,708
Ensembl chrNW_004955413:17,113,408...17,148,708
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16322341 PMID:16728586 PMID:20154269 RGD:2298762 RGD:2298763 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
JBrowse link
G Reps2 RALBP1 associated Eps domain containing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chrNW_004955519:1,131,027...1,358,313
Ensembl chrNW_004955519:1,136,519...1,358,313
JBrowse link
G Rgs2 regulator of G protein signaling 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955406:30,261,757...30,265,389
Ensembl chrNW_004955406:30,261,757...30,266,005
JBrowse link
G Rhoa ras homolog family member A ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:26619011 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
JBrowse link
G Ribc2 RIB43A domain with coiled-coils 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955413:29,765,119...29,781,206
Ensembl chrNW_004955413:29,764,684...29,783,711
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955476:11,827,004...11,833,495
Ensembl chrNW_004955476:11,827,004...11,833,162
JBrowse link
G Rmnd1 required for meiotic nuclear division 1 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955439:10,151,357...10,193,765 JBrowse link
G Rnf115 ring finger protein 115 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004955568:263,302...349,192
Ensembl chrNW_004955568:263,302...349,192
JBrowse link
G Rnf182 ring finger protein 182 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955465:813,996...871,907
Ensembl chrNW_004955465:813,996...820,849
JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:20140017 NCBI chrNW_004955402:9,752,101...9,864,317
Ensembl chrNW_004955402:9,750,730...9,864,317
JBrowse link
G Ror1 receptor tyrosine kinase like orphan receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 NCBI chrNW_004955423:26,029,122...26,274,668
Ensembl chrNW_004955423:26,028,250...26,170,533
JBrowse link
G Rpl23a ribosomal protein L23a ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955481:4,433,367...4,437,838
Ensembl chrNW_004955481:4,433,417...4,437,754
JBrowse link
G Rpl31 ribosomal protein L31 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955470:6,912,109...6,916,232
Ensembl chrNW_004955470:6,912,537...6,916,232
JBrowse link
G Rplp2 ribosomal protein lateral stalk subunit P2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955476:11,312,051...11,314,334 JBrowse link
G Rps4x ribosomal protein S4 X-linked ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955475:11,656,537...11,661,803
Ensembl chrNW_004955475:11,655,813...11,662,391
JBrowse link
G Rps6 ribosomal protein S6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 NCBI chrNW_004955434:21,744,045...21,745,646
Ensembl chrNW_004955434:21,744,082...21,746,626
JBrowse link
G Rps6kb2 ribosomal protein S6 kinase B2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20953835 NCBI chrNW_004955422:18,043,785...18,050,406
Ensembl chrNW_004955422:18,041,729...18,050,406
JBrowse link
G Rps7 ribosomal protein S7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955487:3,793,168...3,798,007
Ensembl chrNW_004955487:3,792,870...3,798,153
JBrowse link
G Rps8 ribosomal protein S8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955464:13,443,580...13,445,391
Ensembl chrNW_004955464:13,443,631...13,445,389
JBrowse link
G Rrad RRAD, Ras related glycolysis inhibitor and calcium channel regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:17195088 NCBI chrNW_004955433:23,426,258...23,439,094
Ensembl chrNW_004955433:23,426,643...23,438,923
JBrowse link
G Rspo3 R-spondin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17468756 NCBI chrNW_004955436:8,151,122...8,235,183
Ensembl chrNW_004955436:8,151,122...8,237,861
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:32198086 NCBI chrNW_004955437:10,598,145...10,885,858
Ensembl chrNW_004955437:10,598,145...10,800,560
JBrowse link
G Rxrb retinoid X receptor beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:22322885 NCBI chrNW_004955437:1,767,833...1,774,401
Ensembl chrNW_004955437:1,767,833...1,774,401
JBrowse link
G Serpinb2 serpin family B member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955402:47,707,182...47,720,688
Ensembl chrNW_004955402:47,711,215...47,720,755
JBrowse link
G Serpinb5 serpin family B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16799634 NCBI chrNW_004955402:47,248,665...47,276,017
Ensembl chrNW_004955402:47,248,932...47,276,834
JBrowse link
G Setbp1 SET binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25751625 NCBI chrNW_004955402:30,380,346...30,738,869
Ensembl chrNW_004955402:30,380,346...30,734,144
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:26437033 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760
JBrowse link
G Sf3b1 splicing factor 3b subunit 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:23634996 PMID:26619011 NCBI chrNW_004955403:3,134,960...3,163,395
Ensembl chrNW_004955403:3,134,955...3,166,121
JBrowse link
G Sf3b2 splicing factor 3b subunit 2 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:26619011 NCBI chrNW_004955422:19,242,041...19,266,479
Ensembl chrNW_004955422:19,240,974...19,257,104
JBrowse link
G Sfrp1 secreted frizzled related protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Sfrp5 secreted frizzled related protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283316 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910
JBrowse link
G Shc1 SHC adaptor protein 1 ISO ClinVar Annotator: match by term: Breast neoplasm ClinVar NCBI chrNW_004955545:1,468,391...1,479,209
Ensembl chrNW_004955545:1,468,391...1,476,814
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 no_association ISO DNA:SNP:CDS:no association between SNP rs1979277, rs1979276 or rs3783 and susceptibility to breast cancer
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:17311260 PMID:17595805 RGD:2300328 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202
JBrowse link
G Sim1 SIM bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chrNW_004955411:26,173,009...26,256,545
Ensembl chrNW_004955411:26,173,009...26,259,752
JBrowse link
G Sirt1 sirtuin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 NCBI chrNW_004955425:20,280,725...20,307,663
Ensembl chrNW_004955425:20,279,963...20,307,663
JBrowse link
G Slc10a6 solute carrier family 10 member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30186172 NCBI chrNW_004955474:2,949,773...2,982,458
Ensembl chrNW_004955474:2,951,052...2,980,980
JBrowse link
G Slc16a3 solute carrier family 16 member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22313602 NCBI chrNW_004955506:935,783...945,014
Ensembl chrNW_004955506:935,783...945,029
JBrowse link
G Slc22a18 solute carrier family 22 member 18 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955422:14,590,588...14,615,898
Ensembl chrNW_004955422:14,592,250...14,616,890
JBrowse link
G Slc28a1 solute carrier family 28 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16837820 NCBI chrNW_004955416:14,226,411...14,267,962
Ensembl chrNW_004955416:14,226,278...14,268,350
JBrowse link
G Slc2a1 solute carrier family 2 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20197467 NCBI chrNW_004955537:2,408,042...2,438,788
Ensembl chrNW_004955537:2,408,042...2,439,511
JBrowse link
G Slc2a10 solute carrier family 2 member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25151356 NCBI chrNW_004955445:10,708,147...10,722,109
Ensembl chrNW_004955445:10,709,681...10,722,264
JBrowse link
G Slc2a2 solute carrier family 2 member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 NCBI chrNW_004955420:1,101,769...1,129,672
Ensembl chrNW_004955420:1,101,769...1,129,715
JBrowse link
G Slc39a6 solute carrier family 39 member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12839489 NCBI chrNW_004955402:22,670,598...22,698,455
Ensembl chrNW_004955402:22,670,437...22,698,591
JBrowse link
G Slc5a5 solute carrier family 5 member 5 ISO CTD Direct Evidence: therapeutic CTD PMID:12489024 NCBI chrNW_004955524:3,372,539...3,380,758 JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:8898652 PMID:9214508 PMID:9285566 PMID:9582123 PMID:9679244 More... NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 PMID:24014025 NCBI chrNW_004955445:8,232,084...8,237,893
Ensembl chrNW_004955445:8,231,924...8,237,996
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11850205 NCBI chrNW_004955454:8,759,860...8,763,603
Ensembl chrNW_004955454:8,758,636...8,764,427
JBrowse link
G Sncg synuclein gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:20595634 NCBI chrNW_004955510:5,958,276...5,961,719
Ensembl chrNW_004955510:5,958,276...5,961,719
JBrowse link
G Socs1 suppressor of cytokine signaling 1 ISO DNA:hypermethylation RGD PMID:15361843 RGD:2298907 NCBI chrNW_004955442:7,321,337...7,323,109
Ensembl chrNW_004955442:7,321,337...7,323,109
JBrowse link
G Socs2 suppressor of cytokine signaling 2 disease_progression ISO RGD PMID:17651480 RGD:2298902 NCBI chrNW_004955405:30,349,956...30,623,849
Ensembl chrNW_004955405:30,366,866...30,375,468
Ensembl chrNW_004955405:30,366,866...30,375,468
JBrowse link
G Sod2 superoxide dismutase 2 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:15168344 PMID:17965603 PMID:19385967 PMID:19756960 PMID:20562527 RGD:1581248 NCBI chrNW_004955439:21,209,101...21,223,538
Ensembl chrNW_004955439:21,209,101...21,224,163
JBrowse link
G Spata18 spermatogenesis associated 18 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955447:18,401,881...18,437,878 JBrowse link
G Spp1 secreted phosphoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18949741 PMID:22531848 NCBI chrNW_004955474:1,914,477...1,922,025
Ensembl chrNW_004955474:1,913,829...1,922,016
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase disease_progression ISO protein:altered localization:cytoplasm
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:19830888 PMID:21357651 RGD:2315076 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30394316 NCBI chrNW_004955413:27,271,717...27,326,655
Ensembl chrNW_004955413:27,271,953...27,326,759
JBrowse link
G St14 ST14 transmembrane serine protease matriptase disease_progression ISO protein:increased expression:breast RGD PMID:17163404 RGD:2315089 NCBI chrNW_004955412:31,091,313...31,129,050
Ensembl chrNW_004955412:31,090,504...31,129,050
JBrowse link
G Stard8 StAR related lipid transfer domain containing 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955475:8,203,624...8,278,319
Ensembl chrNW_004955475:8,245,754...8,278,319
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14975756 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Stat5a signal transducer and activator of transcription 5A ISO protein:decreased expression:breast
CTD Direct Evidence: marker/mechanism
protein:altered localization:nucleus
RGD
CTD
PMID:15609129 PMID:16133357 RGD:2291930 RGD:2291932 NCBI chrNW_004955451:16,305,363...16,319,219
Ensembl chrNW_004955451:16,305,363...16,318,534
JBrowse link
G Stc2 stanniocalcin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18492817 NCBI chrNW_004955408:25,937,174...25,950,221
Ensembl chrNW_004955408:25,934,932...25,949,399
JBrowse link
G Stmn1 stathmin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955452:5,387,696...5,393,337
Ensembl chrNW_004955452:5,388,150...5,391,518
JBrowse link
G Stxbp4 syntaxin binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955451:7,463,285...7,635,690
Ensembl chrNW_004955451:7,466,314...7,619,277
JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955439:9,131,227...9,574,112 JBrowse link
G Synj2 synaptojanin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955439:4,305,630...4,400,775
Ensembl chrNW_004955439:4,290,238...4,400,775
JBrowse link
G Tafa4 TAFA chemokine like family member 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15818620 NCBI chrNW_004955421:18,920,551...19,083,792
Ensembl chrNW_004955421:18,920,551...19,083,915
JBrowse link
G Tank TRAF family member associated NFKB activator ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955449:12,470,203...12,561,364
Ensembl chrNW_004955449:12,470,085...12,561,370
JBrowse link
G Tbx3 T-box transcription factor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21098263 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063
JBrowse link
G Tert telomerase reverse transcriptase disease_progression
susceptibility
ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:plasma
DNA:SNPs:promoter:-1381C>T,-659G>A,-244C>T (human)
mRNA:increased expression:breast
CTD
RGD
PMID:14654933 PMID:17616810 PMID:17848914 PMID:17974999 PMID:23535731 RGD:2291969 RGD:2291981 RGD:2291983 RGD:2291987 NCBI chrNW_004955504:649,248...669,796
Ensembl chrNW_004955504:651,779...670,589
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO CTD Direct Evidence: therapeutic CTD PMID:16204029 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929
JBrowse link
G Tff1 trefoil factor 1 disease_progression ISO protein:increased expression:breast RGD PMID:16267614 RGD:2292002 NCBI chrNW_004955407:39,363,693...39,365,724 JBrowse link
G Tfpi2 tissue factor pathway inhibitor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955432:10,635,626...10,641,345
Ensembl chrNW_004955432:10,631,843...10,641,538
JBrowse link
G Tfrc transferrin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16904380 PMID:19238537 NCBI chrNW_004955420:12,348,392...12,372,714
Ensembl chrNW_004955420:12,348,821...12,372,691
JBrowse link
G Tgm2 transglutaminase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19579870 NCBI chrNW_004955445:18,544,192...18,576,576
Ensembl chrNW_004955445:18,544,183...18,576,570
JBrowse link
G Thbs1 thrombospondin 1 ISO CTD Direct Evidence: therapeutic CTD PMID:9309585 NCBI chrNW_004955416:6,490,034...6,506,419
Ensembl chrNW_004955416:6,489,451...6,506,419
JBrowse link
G Themis2 thymocyte selection associated family member 2 ISO CTD Direct Evidence: therapeutic CTD PMID:19942713 NCBI chrNW_004955452:7,058,703...7,075,114
Ensembl chrNW_004955452:7,058,662...7,075,463
JBrowse link
G Timp2 TIMP metallopeptidase inhibitor 2 ISO protein:decreased expression:serum
protein:decreased expression:breast
RGD PMID:17240786 PMID:17642161 RGD:2290392 RGD:2290398 NCBI chrNW_004955506:3,769,113...3,812,896
Ensembl chrNW_004955506:3,768,646...3,813,820
JBrowse link
G Timp4 TIMP metallopeptidase inhibitor 4 ISO RGD PMID:9190892 RGD:2290455 NCBI chrNW_004955429:14,689,016...14,693,211
Ensembl chrNW_004955429:14,685,031...14,693,211
JBrowse link
G Tle3 TLE family member 3, transcriptional corepressor ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004955450:6,604,915...6,645,305
Ensembl chrNW_004955450:6,603,879...6,645,602
JBrowse link
G Tmeff2 transmembrane protein with EGF like and two follistatin like domains 2 ISO DNA:hypermethylation:promoter RGD PMID:16234815 RGD:2290489 NCBI chrNW_004955403:7,122,019...7,353,769
Ensembl chrNW_004955403:7,121,834...7,354,908
JBrowse link
G Tmem25 transmembrane protein 25 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19776672 NCBI chrNW_004955412:19,690,048...19,695,258
Ensembl chrNW_004955412:19,690,048...19,695,258
JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 PMID:17516992 PMID:19446661 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tnfsf10 TNF superfamily member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:18483385 NCBI chrNW_004955420:2,550,392...2,566,448
Ensembl chrNW_004955420:2,549,142...2,566,564
JBrowse link
G Tnip1 TNFAIP3 interacting protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16298037 NCBI chrNW_004955408:2,575,324...2,621,845
Ensembl chrNW_004955408:2,594,756...2,621,304
JBrowse link
G Top2a DNA topoisomerase II alpha disease_progression ISO CTD Direct Evidence: marker/mechanism
DNA:deletion (human)
DNA:amplification, deletion (human)
CTD
RGD
PMID:11583189 PMID:12006526 PMID:16234514 PMID:18465341 PMID:18702822 More... RGD:2315120 RGD:2315127 RGD:2315129 NCBI chrNW_004955451:14,928,273...14,964,855
Ensembl chrNW_004955451:14,929,136...14,964,723
JBrowse link
G Tox3 TOX high mobility group box family member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17529967 NCBI chrNW_004955433:10,328,886...10,426,540
Ensembl chrNW_004955433:10,327,342...10,426,540
JBrowse link
G Tp53 tumor protein p53 susceptibility ISO DNA:missense mutation: :p.R72P
ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm | ClinVar Annotator: match by term: Breast tumor
RGD
ClinVar
PMID:124622 PMID:253702 PMID:960674 PMID:1349175 PMID:1359493 More... RGD:2290534 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:12374701 PMID:30705370 RGD:2325153 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278
JBrowse link
G Tp53bp2 tumor protein p53 binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28650484 NCBI chrNW_004955520:1,254,853...1,285,118
Ensembl chrNW_004955520:1,257,216...1,285,322
JBrowse link
G Tp63 tumor protein p63 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25739959 NCBI chrNW_004955420:18,178,639...18,384,786
Ensembl chrNW_004955420:18,176,155...18,384,786
JBrowse link
G Tp73 tumor protein p73 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28212736 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982
JBrowse link
G Trerf1 transcriptional regulating factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19075277 NCBI chrNW_004955437:8,411,951...8,600,283
Ensembl chrNW_004955437:8,413,408...8,451,256
JBrowse link
G Trim47 tripartite motif containing 47 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31981573 NCBI chrNW_004955506:6,379,088...6,383,671
Ensembl chrNW_004955506:6,379,088...6,385,446
JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955436:7,274,848...7,318,762
Ensembl chrNW_004955436:7,274,745...7,320,997
JBrowse link
G Tymp thymidine phosphorylase disease_progression ISO RGD PMID:16854285 RGD:2293718 NCBI chrNW_004955413:33,505,424...33,509,095
Ensembl chrNW_004955413:33,505,446...33,508,748
JBrowse link
G Tyms thymidylate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16723031 PMID:19020767 PMID:21501481 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Ubd ubiquitin D ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955583:29,438...29,873
Ensembl chrNW_004955583:29,438...31,555
JBrowse link
G Ube2c ubiquitin conjugating enzyme E2 C ISO CTD Direct Evidence: marker/mechanism CTD PMID:17659439 NCBI chrNW_004955445:11,474,826...11,479,479
Ensembl chrNW_004955445:11,469,063...11,478,759
JBrowse link
G Ublcp1 ubiquitin like domain containing CTD phosphatase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955408:13,259,328...13,279,509
Ensembl chrNW_004955408:13,259,328...13,279,574
JBrowse link
G Umps uridine monophosphate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19020767 PMID:19151563 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
JBrowse link
G Upk1b uroplakin 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:25330770 NCBI chrNW_004955427:18,929,125...18,959,745
Ensembl chrNW_004955427:18,929,126...18,960,208
JBrowse link
G Vdr vitamin D receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16280049 PMID:22892281 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048
JBrowse link
G Vegfa vascular endothelial growth factor A ISO protein:increased expression:breast RGD PMID:19567820 PMID:19722158 RGD:2315457 RGD:2315461 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Vegfb vascular endothelial growth factor B ISO CTD Direct Evidence: marker/mechanism CTD PMID:23146280 NCBI chrNW_004955422:20,840,055...20,843,182
Ensembl chrNW_004955422:20,840,055...20,843,225
JBrowse link
G Vegfc vascular endothelial growth factor C ISO CTD Direct Evidence: marker/mechanism CTD PMID:18509974 PMID:26124351 NCBI chrNW_004955403:31,016,423...31,130,892 JBrowse link
G Vim vimentin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21501481 PMID:24014025 PMID:25330770 PMID:27811057 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO CTD Direct Evidence: marker/mechanism CTD PMID:21466612 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351
JBrowse link
G Wnt10b Wnt family member 10B ISO CTD Direct Evidence: marker/mechanism CTD PMID:12437293 NCBI chrNW_004955500:7,782,782...7,800,281
Ensembl chrNW_004955500:7,782,782...7,788,309
JBrowse link
G Wt1 WT1 transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961577 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473
JBrowse link
G Wwox WW domain containing oxidoreductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17200365 NCBI chrNW_004955522:1,265,732...2,185,372
Ensembl chrNW_004955522:1,265,404...2,184,562
JBrowse link
G Xpo1 exportin 1 ISO ClinVar Annotator: match by term: Breast Neoplasms | ClinVar Annotator: match by term: Breast neoplasm ClinVar PMID:26619011 NCBI chrNW_004955424:22,370,006...22,420,568
Ensembl chrNW_004955424:22,370,006...22,420,568
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 susceptibility
disease_progression
no_association
ISO DNA:polymorphism:intron:IVS10+141G>A
DNA:polymorphism: :p.R399Q
DNA:polymorphisms: :p.R194W, p.R399Q
RGD PMID:16596326 PMID:16963196 PMID:17381415 PMID:19051060 RGD:2302566 RGD:2302573 RGD:2302574 RGD:2302575 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12023982 NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12023982 NCBI chrNW_004955538:2,499,297...2,511,898
Ensembl chrNW_004955538:2,501,607...2,509,778
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:28114269 PMID:28524356 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408
JBrowse link
G Ybx1 Y-box binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15703814 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
G Zc3h11a zinc finger CCCH-type containing 11A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25038754 NCBI chrNW_004955406:39,678,544...39,718,062 JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 PMID:21501481 NCBI chrNW_004955429:23,011,627...23,198,188
Ensembl chrNW_004955429:23,010,790...23,198,250
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19839049 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491
JBrowse link
G Znf366 zinc finger protein 366 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20008677 PMID:21122099 NCBI chrNW_004955575:1,223,834...1,289,668
Ensembl chrNW_004955575:1,223,781...1,289,855
JBrowse link
G Zswim5 zinc finger SWIM-type containing 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29915430 NCBI chrNW_004955464:13,049,717...13,226,274
Ensembl chrNW_004955464:13,049,706...13,223,579
JBrowse link
Animal Mammary Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004955403:24,190,674...24,235,354
Ensembl chrNW_004955403:24,190,674...24,236,780
JBrowse link
G Actb actin beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004955460:10,358,100...10,361,585
Ensembl chrNW_004955460:10,356,699...10,361,585
JBrowse link
G Actg1 actin gamma 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004955506:1,546,678...1,549,611
Ensembl chrNW_004955506:1,546,678...1,552,105
JBrowse link
G Actn4 actinin alpha 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004955468:770,573...841,859
Ensembl chrNW_004955468:770,573...842,209
JBrowse link
G Alcam activated leukocyte cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004955427:6,494,657...6,544,668
Ensembl chrNW_004955427:6,494,124...6,545,963
JBrowse link
G Anxa1 annexin A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 PMID:16316942 PMID:22248470 NCBI chrNW_004955512:5,686,508...5,703,645 JBrowse link
G Anxa2 annexin A2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22248470 NCBI chrNW_004955450:14,545,586...14,574,161
Ensembl chrNW_004955450:14,512,381...14,574,696
JBrowse link
G Anxa4 annexin A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16316942 NCBI chrNW_004955424:15,323,604...15,389,136
Ensembl chrNW_004955424:15,321,990...15,389,136
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:9111214 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Aqp1 aquaporin 1 (Colton blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462 NCBI chrNW_004955410:32,066,196...32,078,661
Ensembl chrNW_004955410:32,066,196...32,078,717
JBrowse link
G Areg amphiregulin ISO mRNA:increased expression:mammary gland RGD PMID:18421211 RGD:2292665 NCBI chrNW_004955474:680,212...689,021
Ensembl chrNW_004955474:680,204...689,088
JBrowse link
G Atp5if1 ATP synthase inhibitory factor subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12376462