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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Colorectal Neoplasms
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Accession:DOID:9008443 term browser browse the term
Definition:Tumors or cancer of the COLON or the RECTUM or both. Risk factors for colorectal cancer include chronic ULCERATIVE COLITIS; FAMILIAL POLYPOSIS COLI; exposure to ASBESTOS; and irradiation of the CERVIX UTERI.
Synonyms:exact_synonym: colorectal neoplasm;   colorectal tumor;   colorectal tumors
 primary_id: MESH:D015179
 xref: EFO:0000360;   EFO:0004142


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Colorectal Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955419:21,553,863...21,681,626
Ensembl chrNW_004955419:21,553,835...21,681,619
JBrowse link
G Abca12 ATP binding cassette subfamily A member 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955457:885,941...1,062,713
Ensembl chrNW_004955457:879,510...1,062,713
JBrowse link
G Abca13 ATP binding cassette subfamily A member 13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955456:4,977,504...5,341,259
Ensembl chrNW_004955456:4,978,027...5,341,242
JBrowse link
G Abca3 ATP binding cassette subfamily A member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955442:14,933,550...14,989,492
Ensembl chrNW_004955442:14,933,550...14,989,492
JBrowse link
G Abca4 ATP binding cassette subfamily A member 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955423:612,098...738,702
Ensembl chrNW_004955423:612,098...736,035
JBrowse link
G Abca5 ATP binding cassette subfamily A member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955478:3,526,376...3,586,811
Ensembl chrNW_004955478:3,519,368...3,586,811
JBrowse link
G Abca6 ATP binding cassette subfamily A member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955478:3,639,817...3,706,115
Ensembl chrNW_004955478:3,639,781...3,707,449
JBrowse link
G Abca9 ATP binding cassette subfamily A member 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955478:3,718,494...3,785,147
Ensembl chrNW_004955478:3,718,503...3,787,865
JBrowse link
G Abcb1 ATP binding cassette subfamily B member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 PMID:23977225 NCBI chrNW_004955432:4,911,774...5,085,349 JBrowse link
G Abcb10 ATP binding cassette subfamily B member 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955492:8,532,240...8,573,211
Ensembl chrNW_004955492:8,532,240...8,577,041
JBrowse link
G Abcb11 ATP binding cassette subfamily B member 11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955449:5,412,958...5,511,629
Ensembl chrNW_004955449:5,412,876...5,512,701
JBrowse link
G Abcb5 ATP binding cassette subfamily B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955410:23,283,263...23,379,000
Ensembl chrNW_004955410:23,283,263...23,379,000
JBrowse link
G Abcb6 ATP binding cassette subfamily B member 6 (LAN blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955453:14,215,104...14,222,338
Ensembl chrNW_004955453:14,215,408...14,222,172
JBrowse link
G Abcc1 ATP binding cassette subfamily C member 1 (ABCC1 blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955442:729,322...858,826
Ensembl chrNW_004955442:729,316...860,290
JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955507:5,724,788...5,791,281
Ensembl chrNW_004955507:5,724,762...5,790,812
JBrowse link
G Abcc3 ATP binding cassette subfamily C member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955451:11,087,246...11,130,108
Ensembl chrNW_004955451:11,087,570...11,130,482
JBrowse link
G Abcc4 ATP binding cassette subfamily C member 4 (PEL blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955404:14,700,808...14,927,944
Ensembl chrNW_004955404:14,700,808...14,928,617
JBrowse link
G Abcc5 ATP binding cassette subfamily C member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955420:23,447,920...23,522,732
Ensembl chrNW_004955420:23,447,920...23,522,732
JBrowse link
G Abcc6 ATP binding cassette subfamily C member 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955442:865,292...921,739
Ensembl chrNW_004955442:865,238...922,221
JBrowse link
G Abcc8 ATP binding cassette subfamily C member 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955414:32,216,243...32,289,028
Ensembl chrNW_004955414:32,216,196...32,289,053
JBrowse link
G Abcd2 ATP binding cassette subfamily D member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955505:717,800...769,702
Ensembl chrNW_004955505:721,222...798,470
JBrowse link
G Abcd3 ATP binding cassette subfamily D member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955423:280,497...359,711
Ensembl chrNW_004955423:280,497...359,711
JBrowse link
G Abcd4 ATP binding cassette subfamily D member 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955523:1,170,306...1,181,352
Ensembl chrNW_004955523:1,170,303...1,182,467
JBrowse link
G Abce1 ATP binding cassette subfamily E member 1 ISO CTD Direct Evidence: marker/mechanism
mRNA:increased expression:colorectal mucosa (human)
CTD
RGD
PMID:22294766 RGD:11041887 NCBI chrNW_004955428:1,029,909...1,058,902
Ensembl chrNW_004955428:1,029,399...1,058,902
JBrowse link
G Abcg1 ATP binding cassette subfamily G member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955407:39,410,262...39,459,383
Ensembl chrNW_004955407:39,410,262...39,459,383
JBrowse link
G Abcg2 ATP binding cassette subfamily G member 2 (JR blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:21544799 PMID:22294766 NCBI chrNW_004955474:12,365,903...12,408,715 JBrowse link
G Ache acetylcholinesterase (Cartwright blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:31004929 NCBI chrNW_004955573:79,606...85,799
Ensembl chrNW_004955573:80,298...85,799
JBrowse link
G Ackr3 atypical chemokine receptor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22180778 NCBI chrNW_004955453:195,346...218,034
Ensembl chrNW_004955453:195,346...218,034
JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Akt2 AKT serine/threonine kinase 2 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:16094359 PMID:25157968 NCBI chrNW_004955578:950,258...1,004,438
Ensembl chrNW_004955578:967,593...1,004,438
JBrowse link
G Alb albumin disease_progression ISO RGD PMID:16965244 RGD:11035272 NCBI chrNW_004955447:9,327...21,212 JBrowse link
G Aldh2 aldehyde dehydrogenase 2 family member ISO CTD Direct Evidence: marker/mechanism CTD PMID:16332725 NCBI chrNW_004955482:8,352,569...8,383,097
Ensembl chrNW_004955482:8,352,569...8,384,899
JBrowse link
G Amacr alpha-methylacyl-CoA racemase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17684125 NCBI chrNW_004955426:19,570,179...19,580,920
Ensembl chrNW_004955426:19,570,070...19,580,818
JBrowse link
G Anp32a acidic nuclear phosphoprotein 32 family member A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955450:7,449,368...7,484,524 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:1316610 PMID:1338764 PMID:1338904 PMID:1528264 PMID:1651563 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:18716850 PMID:21278247 NCBI chrNW_004955495:6,466,434...6,489,612
Ensembl chrNW_004955495:6,467,357...6,489,633
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:27941798 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO CTD Direct Evidence: marker/mechanism CTD PMID:21081473 NCBI chrNW_004955588:159,462...233,047
Ensembl chrNW_004955588:159,462...233,047
JBrowse link
G Atox1 antioxidant 1 copper chaperone ISO CTD Direct Evidence: marker/mechanism CTD PMID:31961892 NCBI chrNW_004955408:6,156,334...6,168,423
Ensembl chrNW_004955408:6,156,334...6,168,607
JBrowse link
G Atp7b ATPase copper transporting beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:19296535 NCBI chrNW_004955431:5,228,395...5,297,120
Ensembl chrNW_004955431:5,229,126...5,269,616
JBrowse link
G Aurka aurora kinase A ISO CTD Direct Evidence: marker/mechanism CTD PMID:24976383 NCBI chrNW_004955445:2,831,073...2,853,151
Ensembl chrNW_004955445:2,831,157...2,853,357
JBrowse link
G Axin2 axin 2 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G B2m beta-2-microglobulin ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:26619011 NCBI chrNW_004955416:11,205,503...11,211,325
Ensembl chrNW_004955416:11,204,849...11,215,568
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bcl2 BCL2 apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:18949393 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19011631 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Boc BOC cell adhesion associated, oncogene regulated ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955427:13,424,478...13,492,527
Ensembl chrNW_004955427:13,424,478...13,493,952
JBrowse link
G Boll boule homolog, RNA binding protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955403:2,917,694...2,963,470
Ensembl chrNW_004955403:2,920,722...2,958,074
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:12068308 PMID:12198537 PMID:12438234 PMID:12447372 PMID:12460918 More... NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955470:3,152,798...3,190,185
Ensembl chrNW_004955470:3,152,758...3,191,888
JBrowse link
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955416:7,105,302...7,159,121
Ensembl chrNW_004955416:7,105,261...7,160,012
JBrowse link
G Ca12 carbonic anhydrase 12 ISO protein:decreased expression:colorectal mucosa RGD PMID:15849821 RGD:153352324 NCBI chrNW_004955450:11,927,730...11,975,553
Ensembl chrNW_004955450:11,943,340...11,975,928
JBrowse link
G Cables1 Cdk5 and Abl enzyme substrate 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17982127 NCBI chrNW_004955402:11,415,913...11,514,132
Ensembl chrNW_004955402:11,414,271...11,513,030
JBrowse link
G Cabyr calcium binding tyrosine phosphorylation regulated ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955402:12,508,524...12,529,230
Ensembl chrNW_004955402:12,508,538...12,529,230
JBrowse link
G Cacul1 CDK2 associated cullin domain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955431:23,242,959...23,319,440
Ensembl chrNW_004955431:23,242,959...23,319,434
JBrowse link
G Calcoco2 calcium binding and coiled-coil domain 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955451:12,443,262...12,469,608
Ensembl chrNW_004955451:12,443,796...12,469,857
JBrowse link
G Calr calreticulin ISO CTD Direct Evidence: therapeutic CTD PMID:17187072 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372
JBrowse link
G Casp8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17450141 NCBI chrNW_004955403:322,082...348,591
Ensembl chrNW_004955403:322,555...347,053
JBrowse link
G Cbx5 chromobox 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955458:1,486,951...1,529,649
Ensembl chrNW_004955458:1,486,951...1,505,653
JBrowse link
G Ccl20 C-C motif chemokine ligand 20 treatment ISO RGD PMID:14500387 RGD:7483600 NCBI chrNW_004955453:6,846,625...6,850,007
Ensembl chrNW_004955453:6,846,549...6,850,031
JBrowse link
G Ccnd1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Ccnd2 cyclin D2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Cd109 CD109 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955488:9,281,407...9,378,354
Ensembl chrNW_004955488:9,281,661...9,378,490
JBrowse link
G Cd226 CD226 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:16015041 NCBI chrNW_004955402:53,408,861...53,560,896
Ensembl chrNW_004955402:53,473,131...53,560,924
JBrowse link
G Cd9 CD9 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955413:3,891,874...3,924,065
Ensembl chrNW_004955413:3,891,874...3,928,119
JBrowse link
G Cdh1 cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10072428 PMID:19011631 NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967
JBrowse link
G Cdh22 cadherin 22 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955445:11,084,448...11,151,871
Ensembl chrNW_004955445:11,084,448...11,151,871
JBrowse link
G Cdh5 cadherin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955433:22,957,718...22,994,515
Ensembl chrNW_004955433:22,967,960...22,992,924
JBrowse link
G Cdh7 cadherin 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16015041 NCBI chrNW_004955402:49,444,814...49,568,653
Ensembl chrNW_004955402:49,444,814...49,562,803
JBrowse link
G Cftr CF transmembrane conductance regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:22294766 NCBI chrNW_004955432:23,179,645...23,328,347
Ensembl chrNW_004955432:23,178,866...23,328,382
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955418:14,200,618...14,268,361
Ensembl chrNW_004955418:14,200,617...14,268,361
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955486:6,320,380...6,369,020
Ensembl chrNW_004955486:6,320,380...6,369,065
JBrowse link
G Chek2 checkpoint kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12690581 NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Cnppd1 cyclin Pas1/PHO80 domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955453:14,263,619...14,270,701
Ensembl chrNW_004955453:14,264,707...14,270,732
JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955532:650,913...681,186 JBrowse link
G Crebbp CREB binding protein ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:21390126 PMID:21680795 PMID:21796119 PMID:22832583 PMID:23334668 More... NCBI chrNW_004955442:13,559,496...13,691,913
Ensembl chrNW_004955442:13,559,496...13,692,004
JBrowse link
G Csf2 colony stimulating factor 2 ISO CTD Direct Evidence: therapeutic CTD PMID:15289873 NCBI chrNW_004955408:3,452,009...3,454,255
Ensembl chrNW_004955408:3,451,965...3,454,312
JBrowse link
G Ctbp1 C-terminal binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17028196 NCBI chrNW_004955514:630,168...652,817
Ensembl chrNW_004955514:626,645...652,817
JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:9065402 PMID:9065403 PMID:9294210 PMID:9500465 PMID:9927029 More... NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20065508 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643
JBrowse link
G Dact1 dishevelled binding antagonist of beta catenin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955466:12,367,760...12,374,141
Ensembl chrNW_004955466:12,367,775...12,373,036
JBrowse link
G Dcc DCC netrin 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:15365072 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Dclk1 doublecortin like kinase 1 ISO CTD Direct Evidence: therapeutic CTD PMID:23202126 NCBI chrNW_004955431:9,975,629...10,302,605
Ensembl chrNW_004955431:9,975,262...10,297,010
JBrowse link
G Dhfr dihydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955463:3,599,415...3,981,187
Ensembl chrNW_004955463:3,598,985...3,990,849
JBrowse link
G Dnmt1 DNA methyltransferase 1 treatment ISO RGD PMID:23717604 RGD:9588299 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta susceptibility ISO DNA:SNP: :rs406193(human)
DNA:SNP:promoter:-579G>T(human)
RGD PMID:18662374 PMID:19843671 RGD:9589079 RGD:9589147 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301
JBrowse link
G Donson DNA replication fork stabilization factor DONSON ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955407:33,007,257...33,014,600
Ensembl chrNW_004955407:33,007,257...33,015,039
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:31888761 NCBI chrNW_004955495:5,907,486...5,958,241
Ensembl chrNW_004955495:5,909,880...5,959,027
JBrowse link
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955412:20,205,381...20,217,874
Ensembl chrNW_004955412:20,205,381...20,217,871
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15222106 PMID:15814641 PMID:17047489 PMID:17611699 PMID:19020767 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955424:27,181,717...27,240,067
Ensembl chrNW_004955424:27,181,099...27,240,446
JBrowse link
G Egfr epidermal growth factor receptor ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:15118073 PMID:15118125 PMID:15329413 PMID:15604253 PMID:15625347 More... NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 susceptibility ISO DNA:SNP: :rs535586(human) RGD PMID:19843671 RGD:9589147 NCBI chrNW_004955437:396,736...411,144
Ensembl chrNW_004955437:396,742...411,144
JBrowse link
G Eif3h eukaryotic translation initiation factor 3 subunit H ISO CTD Direct Evidence: marker/mechanism CTD PMID:18372905 NCBI chrNW_004955417:22,757,781...22,846,349
Ensembl chrNW_004955417:22,754,395...22,846,618
JBrowse link
G Ep300 E1A binding protein p300 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Epha1 EPH receptor A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19277044 NCBI chrNW_004955494:256,008...268,777
Ensembl chrNW_004955494:255,162...268,777
JBrowse link
G Ephb2 EPH receptor B2 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:18682749 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:16397024 PMID:16988931 PMID:18413839 PMID:22046346 PMID:22908275 More... NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:26619011 NCBI chrNW_004955458:3,683,126...3,701,752
Ensembl chrNW_004955458:3,683,126...3,702,978
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit susceptibility
severity
ISO DNA:snp:3' utr:c.8092C>A (human)
DNA:snp:cds:c.354C>T (human)
RGD PMID:16144923 PMID:24531312 RGD:13207315 RGD:13207423 NCBI chrNW_004955555:2,393,510...2,430,180
Ensembl chrNW_004955555:2,393,278...2,406,582
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:18267032 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO CTD Direct Evidence: marker/mechanism CTD PMID:34182385 NCBI chrNW_004955404:8,294,506...8,321,505
Ensembl chrNW_004955404:8,294,346...8,321,112
JBrowse link
G Esr2 estrogen receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15954165 NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946
JBrowse link
G Etv1 ETS variant transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30224643 NCBI chrNW_004955410:17,445,496...17,535,856
Ensembl chrNW_004955410:17,445,496...17,535,856
JBrowse link
G Evl Enah/Vasp-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955438:21,198,761...21,298,657
Ensembl chrNW_004955438:21,198,763...21,298,657
JBrowse link
G Exo1 exonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17656264 NCBI chrNW_004955406:10,248,981...10,276,207
Ensembl chrNW_004955406:10,245,886...10,275,522
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955436:13,710,366...13,982,379
Ensembl chrNW_004955436:13,709,806...13,982,380
JBrowse link
G F7 coagulation factor VII severity ISO protein:increased expression:colorectal mucosa (human) RGD PMID:22166631 RGD:11049522 NCBI chrNW_004955404:685,170...692,797
Ensembl chrNW_004955404:680,594...693,665
JBrowse link
G Fads1 fatty acid desaturase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955511:5,908,394...5,915,764
Ensembl chrNW_004955511:5,907,726...5,915,764
JBrowse link
G Fads2 fatty acid desaturase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955511:5,827,797...5,842,745
Ensembl chrNW_004955511:5,827,797...5,842,760
JBrowse link
G Fat1 FAT atypical cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23354438 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211
JBrowse link
G Fbln2 fibulin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955429:12,791,926...12,880,544
Ensembl chrNW_004955429:12,788,468...12,880,543
JBrowse link
G Fbn2 fibrillin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955415:1,307,553...1,535,435
Ensembl chrNW_004955415:1,309,077...1,537,052
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:25741868 PMID:26619011 NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Fen1 flap structure-specific endonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955511:5,918,667...5,922,506
Ensembl chrNW_004955511:5,918,667...5,922,506
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590
JBrowse link
G Fhl3 four and a half LIM domains 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955452:15,718,832...15,721,697
Ensembl chrNW_004955452:15,719,455...15,721,677
JBrowse link
G Flcn folliculin ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955577:672,774...694,140
Ensembl chrNW_004955577:672,410...694,140
JBrowse link
G Flnc filamin C ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955479:9,633,817...9,661,725
Ensembl chrNW_004955479:9,633,598...9,661,777
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit treatment ISO RGD PMID:9781601 PMID:11481418 RGD:13210756 RGD:13210758 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Foxl2 forkhead box L2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955501:83,965...84,476 JBrowse link
G Fpgs folylpolyglutamate synthase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955419:853,891...871,729
Ensembl chrNW_004955419:851,152...871,522
JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955419:26,760,500...26,788,933
Ensembl chrNW_004955419:26,760,500...26,788,933
JBrowse link
G Gapdh glyceraldehyde-3-phosphate dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955413:4,162,467...4,166,783
Ensembl chrNW_004955413:4,162,467...4,166,783
JBrowse link
G Gata4 GATA binding protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19509152 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267
JBrowse link
G Gata5 GATA binding protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19509152 NCBI chrNW_004955528:1,595,231...1,604,979
Ensembl chrNW_004955528:1,595,231...1,604,979
JBrowse link
G Ggh gamma-glutamyl hydrolase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955444:15,901,225...15,930,358
Ensembl chrNW_004955444:15,900,485...15,931,338
JBrowse link
G Gnb4 G protein subunit beta 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955420:8,601,188...8,626,036
Ensembl chrNW_004955420:8,599,862...8,626,039
JBrowse link
G Gnb5 G protein subunit beta 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955409:2,621,144...2,642,298
Ensembl chrNW_004955409:2,619,718...2,641,308
JBrowse link
G Gpnmb glycoprotein nmb ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955410:25,554,279...25,583,368
Ensembl chrNW_004955410:25,553,973...25,582,500
JBrowse link
G Gpx4 glutathione peroxidase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18850177 NCBI chrNW_004955495:6,767,969...6,772,256
Ensembl chrNW_004955495:6,767,975...6,772,178
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO CTD Direct Evidence: marker/mechanism CTD PMID:18084292 PMID:30510241 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271
JBrowse link
G Grid1 glutamate ionotropic receptor delta type subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955510:4,902,908...5,563,924
Ensembl chrNW_004955510:4,905,518...5,562,464
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:17922030 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Gstm3 glutathione S-transferase mu 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955435:13,253,947...13,256,965
Ensembl chrNW_004955435:13,253,947...13,256,965
JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:19922504 NCBI chrNW_004955422:17,914,228...17,916,918
Ensembl chrNW_004955422:17,914,305...17,917,428
JBrowse link
G Gucy1a2 guanylate cyclase 1 soluble subunit alpha 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955412:9,218,029...9,480,333
Ensembl chrNW_004955412:9,225,305...9,480,206
JBrowse link
G Gucy2c guanylate cyclase 2C ISO CTD Direct Evidence: marker/mechanism CTD PMID:17155897 NCBI chrNW_004955413:11,410,586...11,489,201
Ensembl chrNW_004955413:11,410,586...11,489,201
JBrowse link
G Hapln1 hyaluronan and proteoglycan link protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955418:26,848,302...26,912,151
Ensembl chrNW_004955418:26,848,303...26,913,339
JBrowse link
G Hhip hedgehog interacting protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955428:657,918...745,255
Ensembl chrNW_004955428:657,900...745,250
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 ISO protein:altered expression:colonic epithelium, nucleus, cytoplasm (human) RGD PMID:21194727 RGD:9999439 NCBI chrNW_004955458:1,530,163...1,536,874 JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 severity ISO protein:decreased expression:colonic epithelium, nucleus (human) RGD PMID:21194727 RGD:9999439 NCBI chrNW_004955408:937,706...944,969
Ensembl chrNW_004955408:936,595...948,064
JBrowse link
G Hoxd1 homeobox D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955403:20,476,813...20,478,604
Ensembl chrNW_004955403:20,476,645...20,478,604
JBrowse link
G Hoxd9 homeobox D9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26075790 NCBI chrNW_004955451:12,619,722...12,621,320 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:3018526 PMID:11150980 PMID:12835555 PMID:16155195 PMID:16170316 More... NCBI chrNW_004955476:11,508,446...11,510,333
Ensembl chrNW_004955476:11,508,126...11,510,333
JBrowse link
G Icam5 intercellular adhesion molecule 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955495:1,575,669...1,583,904
Ensembl chrNW_004955495:1,575,669...1,583,910
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:18772396 PMID:19657110 PMID:19798509 PMID:19818334 PMID:20946881 More... NCBI chrNW_004955457:6,851,542...6,869,452
Ensembl chrNW_004955457:6,851,517...6,872,367
JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:20171147 PMID:20847235 PMID:20946881 PMID:21250968 PMID:21596855 More... NCBI chrNW_004955416:15,197,611...15,212,919
Ensembl chrNW_004955416:15,197,366...15,223,363
JBrowse link
G Igf2 insulin like growth factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12637750 NCBI chrNW_004955422:13,880,525...13,907,963
Ensembl chrNW_004955422:13,880,471...13,888,566
JBrowse link
G Igfbp3 insulin like growth factor binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955456:6,795,560...6,802,147
Ensembl chrNW_004955456:6,795,604...6,800,845
JBrowse link
G Il21 interleukin 21 ISO protein:decreased expression:colorectum (human) RGD PMID:28483840 RGD:127285377 NCBI chrNW_004955428:18,057,096...18,065,492
Ensembl chrNW_004955428:18,057,096...18,065,492
JBrowse link
G Il6st interleukin 6 cytokine family signal transducer ISO CTD Direct Evidence: marker/mechanism CTD PMID:19223499 NCBI chrNW_004955446:11,790,636...11,837,734
Ensembl chrNW_004955446:11,790,444...11,835,001
JBrowse link
G Ing4 inhibitor of growth family member 4 ISO CTD Direct Evidence: therapeutic CTD PMID:27806345 NCBI chrNW_004955413:4,263,647...4,274,476
Ensembl chrNW_004955413:4,263,647...4,274,476
JBrowse link
G Ipp intracisternal A particle-promoted polypeptide ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955464:12,562,824...12,589,976
Ensembl chrNW_004955464:12,562,756...12,589,939
JBrowse link
G Jph3 junctophilin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955541:1,969,197...2,020,868
Ensembl chrNW_004955541:1,969,194...2,017,588
JBrowse link
G Kdm2a lysine demethylase 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955422:18,201,243...18,308,163
Ensembl chrNW_004955422:18,200,758...18,308,163
JBrowse link
G Kdm4b lysine demethylase 4B severity ISO protein:increased expression:colon mucosa (human) RGD PMID:22345654 RGD:9586735 NCBI chrNW_004955495:4,019,066...4,101,577
Ensembl chrNW_004955495:4,018,770...4,114,604
JBrowse link
G Kdm5b lysine demethylase 5B severity ISO RGD PMID:23354547 RGD:9587777 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088
JBrowse link
G Kdr kinase insert domain receptor ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:20346928 PMID:35917945 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
JBrowse link
G Klf5 KLF transcription factor 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955404:33,642,604...33,665,445
Ensembl chrNW_004955404:33,644,077...33,658,094
JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:1553789 PMID:2278970 PMID:2547513 PMID:3122217 PMID:3627975 More... NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G Lama1 laminin subunit alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955402:4,281,415...4,397,158
Ensembl chrNW_004955402:4,285,492...4,400,348
JBrowse link
G Lgr5 leucine rich repeat containing G protein-coupled receptor 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25280562 NCBI chrNW_004955405:11,507,083...11,574,504
Ensembl chrNW_004955405:11,507,083...11,574,569
JBrowse link
G Lgr6 leucine rich repeat containing G protein-coupled receptor 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955406:38,274,998...38,381,677
Ensembl chrNW_004955406:38,274,958...38,383,822
JBrowse link
G LOC102009223 cytochrome P450 1B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20878130 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131
JBrowse link
G LOC102010322 cytochrome P450 1A2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21081473 NCBI chrNW_004955450:3,165,107...3,171,894
Ensembl chrNW_004955450:3,165,106...3,171,942
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955419:16,190,109...16,324,702
Ensembl chrNW_004955419:16,191,244...16,325,602
JBrowse link
G Lrrc3b leucine rich repeat containing 3B ISO CTD Direct Evidence: marker/mechanism CTD PMID:18815942 NCBI chrNW_004955430:18,351,763...18,440,120
Ensembl chrNW_004955430:18,351,763...18,440,120
JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:3018526 PMID:11150980 PMID:12835555 PMID:16155195 PMID:16170316 More... NCBI chrNW_004955476:11,493,299...11,507,022
Ensembl chrNW_004955476:11,491,688...11,506,700
JBrowse link
G Ly96 lymphocyte antigen 96 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22180778 NCBI chrNW_004955444:6,356,121...6,387,350
Ensembl chrNW_004955444:6,356,154...6,387,529
JBrowse link
G Maf MAF bZIP transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955522:2,514,313...2,519,694 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:17366577 PMID:17551924 PMID:19915144 PMID:21107320 PMID:22197931 More... NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO RGD PMID:10323886 RGD:13210794 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 ISO RGD PMID:10323886 RGD:13210794 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152
JBrowse link
G Mbd4 methyl-CpG binding domain 4, DNA glycosylase susceptibility
severity
ISO DNA:polymorphism:cds:p.E346K (human)
mRNA:increased expression:colon, rectum (human)
RGD PMID:18097604 PMID:19469655 RGD:2316846 RGD:9588979 NCBI chrNW_004955429:17,858,656...17,868,111
Ensembl chrNW_004955429:17,858,937...17,869,262
JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955408:32,928,519...33,265,049
Ensembl chrNW_004955408:32,928,519...33,264,727
JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO mRNA, protein:increased expression:colon mucosa (human) RGD PMID:9815967 RGD:2317534 NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647
JBrowse link
G Mki67 marker of proliferation Ki-67 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12645814 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Mlh1 mutL homolog 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18497967 PMID:18718023 PMID:18949393 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mlh3 mutL homolog 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17656264 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Mmp2 matrix metallopeptidase 2 treatment ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:18507500 PMID:21278247 PMID:23149858 RGD:8657112 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp9 matrix metallopeptidase 9 treatment ISO RGD PMID:23149858 RGD:8657112 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Msh2 mutS homolog 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18949393 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Mtdh metadherin ISO CTD Direct Evidence: marker/mechanism CTD PMID:29315995 NCBI chrNW_004955417:13,479,398...13,540,706
Ensembl chrNW_004955417:13,479,762...13,537,950
JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15608557 PMID:16512993 PMID:16985020 PMID:17047490 PMID:17087956 More... NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:20190810 PMID:24631838 PMID:25741868 PMID:26018084 PMID:26619011 More... NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16985020 PMID:17389618 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G Nampt nicotinamide phosphoribosyltransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23922874 PMID:32005247 NCBI chrNW_004955410:10,717,664...10,742,109
Ensembl chrNW_004955410:10,717,664...10,751,177
JBrowse link
G Nap1l1 nucleosome assembly protein 1 like 1 ISO mRNA:increased expression:colon (human) RGD PMID:12384809 RGD:9590076 NCBI chrNW_004955405:15,332,696...15,365,181
Ensembl chrNW_004955405:15,330,328...15,365,208
JBrowse link
G Neurl1 neuralized E3 ubiquitin protein ligase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955485:7,015,969...7,046,089 JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20593958 NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604
JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16293616 NCBI chrNW_004955449:16,928,780...16,944,536
Ensembl chrNW_004955449:16,937,794...16,945,731
JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:1654209 PMID:2278970 PMID:2407301 PMID:2674680 PMID:2989702 More... NCBI chrNW_004955435:18,001,517...18,009,105
Ensembl chrNW_004955435:18,001,517...18,009,103
JBrowse link
G Nrcam neuronal cell adhesion molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955410:12,437,248...12,518,083
Ensembl chrNW_004955410:12,437,248...12,518,075
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Ntng1 netrin G1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955435:10,923,557...11,247,091
Ensembl chrNW_004955435:10,923,490...11,248,995
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955416:8,178,493...8,208,336
Ensembl chrNW_004955416:8,178,826...8,207,747
JBrowse link
G Nxn nucleoredoxin ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955481:2,338,005...2,481,557
Ensembl chrNW_004955481:2,338,445...2,481,557
JBrowse link
G Odc1 ornithine decarboxylase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21930798 NCBI chrNW_004955487:5,603,722...5,608,386
Ensembl chrNW_004955487:5,603,722...5,608,386
JBrowse link
G Paip2 poly(A) binding protein interacting protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955418:1,189,822...1,208,559
Ensembl chrNW_004955418:1,189,822...1,208,559
JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27694308 NCBI chrNW_004955489:520,875...557,609
Ensembl chrNW_004955489:520,875...557,615
JBrowse link
G Pax8 paired box 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26075790 NCBI chrNW_004955470:1,016,226...1,072,643
Ensembl chrNW_004955470:1,016,289...1,073,796
JBrowse link
G Pdcd1 programmed cell death 1 ISO protein:increased expression:colonic mucosa, lymphocyte RGD PMID:24165459 RGD:9589083 NCBI chrNW_004955542:49,290...57,747
Ensembl chrNW_004955542:49,259...58,823
JBrowse link
G Pdgfrl platelet derived growth factor receptor like ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955552:2,041,267...2,077,971
Ensembl chrNW_004955552:2,041,267...2,077,972
JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:21702037 RGD:6771214 NCBI chrNW_004955478:7,448,584...7,531,860
Ensembl chrNW_004955478:7,478,492...7,531,188
JBrowse link
G Pgm1 phosphoglucomutase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955423:26,408,775...26,437,527
Ensembl chrNW_004955423:26,408,595...26,437,527
JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955482:8,052,534...8,058,004 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma ISO associated with Colitis RGD PMID:20004201 RGD:6482694 NCBI chrNW_004955410:11,402,476...11,433,335
Ensembl chrNW_004955410:11,402,520...11,437,422
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:25157968 PMID:25741868 PMID:26619011 NCBI chrNW_004955446:1,020,707...1,098,327
Ensembl chrNW_004955446:1,020,043...1,098,820
JBrowse link
G Pmm2 phosphomannomutase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955442:9,390,789...9,411,722
Ensembl chrNW_004955442:9,389,443...9,411,719
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO CTD Direct Evidence: marker/mechanism
DNA:nonsense mutation, missense mutation:CDS:p.195*, p.V759I (human)
CTD
RGD
PMID:23263490 PMID:30086056 RGD:151347647 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:22634755 PMID:30510241 NCBI chrNW_004955414:17,064,379...17,111,946 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:23263490 PMID:23447401 PMID:24525744 PMID:24844595 PMID:25224212 More... NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Pon1 paraoxonase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31004929 NCBI chrNW_004955432:11,893,473...11,923,035
Ensembl chrNW_004955432:11,893,473...11,923,339
JBrowse link
G Postn periostin ISO CTD Direct Evidence: marker/mechanism CTD PMID:15731169 NCBI chrNW_004955431:8,510,646...8,544,901
Ensembl chrNW_004955431:8,510,624...8,544,971
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO CTD Direct Evidence: marker/mechanism CTD PMID:16489531 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Ppm1e protein phosphatase, Mg2+/Mn2+ dependent 1E ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955451:3,989,575...4,137,400
Ensembl chrNW_004955451:3,986,715...4,137,134
JBrowse link
G Ppox protoporphyrinogen oxidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955468:12,930,387...12,934,437
Ensembl chrNW_004955468:12,930,495...12,934,437
JBrowse link
G Ppp1r14a protein phosphatase 1 regulatory inhibitor subunit 14A ISO CTD Direct Evidence: marker/mechanism CTD PMID:17892325 NCBI chrNW_004955468:1,174,946...1,179,289
Ensembl chrNW_004955468:1,174,961...1,179,207
JBrowse link
G Ppp1r9b protein phosphatase 1 regulatory subunit 9B severity ISO mRNA, protein:decreased expression:colorectal carcinoma (human) RGD PMID:23729363 RGD:9999401 NCBI chrNW_004955451:11,516,548...11,530,263
Ensembl chrNW_004955451:11,516,548...11,530,830
JBrowse link
G Ppp2r1a protein phosphatase 2 scaffold subunit Aalpha ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:25741868 PMID:26168268 PMID:26619011 PMID:28492532 PMID:31687265 More... NCBI chrNW_004955558:381,794...410,485
Ensembl chrNW_004955558:381,794...410,485
JBrowse link
G Prkcb protein kinase C beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:7705931 NCBI chrNW_004955493:2,395,494...2,710,522
Ensembl chrNW_004955493:2,395,109...2,710,934
JBrowse link
G Prkce protein kinase C epsilon ISO CTD Direct Evidence: marker/mechanism CTD PMID:7705931 NCBI chrNW_004955441:12,642,703...13,142,396
Ensembl chrNW_004955441:12,642,697...13,139,372
JBrowse link
G Prkd1 protein kinase D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955409:30,554,095...30,860,588
Ensembl chrNW_004955409:30,554,013...30,860,649
JBrowse link
G Prom1 prominin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18829568 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:1336932 PMID:1945792 PMID:9140396 PMID:9241266 PMID:9259288 More... NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10485483 PMID:11375891 PMID:12837940 PMID:15753380 PMID:19671906 More... NCBI chrNW_004955406:25,077,988...25,086,259
Ensembl chrNW_004955406:25,079,945...25,086,171
JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:11704759 PMID:12634870 PMID:12717436 PMID:14644997 PMID:14974085 More... NCBI chrNW_004955482:8,934,734...9,031,230
Ensembl chrNW_004955482:8,934,306...9,035,203
JBrowse link
G Ptpn12 protein tyrosine phosphatase non-receptor type 12 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955410:7,556,283...7,599,170
Ensembl chrNW_004955410:7,557,103...7,599,139
JBrowse link
G Ptprd protein tyrosine phosphatase receptor type D ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955434:12,033,825...14,132,636
Ensembl chrNW_004955434:12,031,420...12,428,774
JBrowse link
G Ptprj protein tyrosine phosphatase receptor type J ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955422:396,266...438,792
Ensembl chrNW_004955422:399,357...443,054
JBrowse link
G Rad54b RAD54 homolog B ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955417:10,598,295...10,685,999
Ensembl chrNW_004955417:10,597,450...10,686,005
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:1760348 PMID:10064593 PMID:17603482 PMID:17603483 PMID:19568997 More... NCBI chrNW_004955429:17,980,956...18,049,723
Ensembl chrNW_004955429:18,025,932...18,049,723
JBrowse link
G Rasl11a RAS like family 11 member A ISO CTD Direct Evidence: marker/mechanism CTD PMID:30224643 NCBI chrNW_004955497:6,695,354...6,697,425
Ensembl chrNW_004955497:6,695,210...6,697,964
JBrowse link
G Rbm38 RNA binding motif protein 38 ISO CTD Direct Evidence: therapeutic CTD PMID:34453780 NCBI chrNW_004955445:2,036,314...2,050,882
Ensembl chrNW_004955445:2,036,124...2,052,139
JBrowse link
G Ret ret proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946
JBrowse link
G Rhoa ras homolog family member A ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:26619011 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
JBrowse link
G Rhpn2 rhophilin Rho GTPase binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19011631 NCBI chrNW_004955468:4,932,437...4,976,584
Ensembl chrNW_004955468:4,932,384...4,977,982
JBrowse link
G Rnf182 ring finger protein 182 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 NCBI chrNW_004955465:813,996...871,907
Ensembl chrNW_004955465:813,996...820,849
JBrowse link
G Rnf43 ring finger protein 43 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25344691 NCBI chrNW_004955451:4,604,985...4,680,762
Ensembl chrNW_004955451:4,604,985...4,680,762
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955487:5,477,097...5,481,422
Ensembl chrNW_004955487:5,476,954...5,483,049
JBrowse link
G Runx3 RUNX family transcription factor 3 ISO DNA:promoter:aberrant methylation RGD PMID:16080503 RGD:2302552 NCBI chrNW_004955452:4,580,444...4,606,820
Ensembl chrNW_004955452:4,579,331...4,636,884
JBrowse link
G Satb2 SATB homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955403:1,663,676...1,811,088
Ensembl chrNW_004955403:1,663,676...1,811,109
JBrowse link
G Scg5 secretogranin V ISO CTD Direct Evidence: marker/mechanism CTD PMID:18084292 NCBI chrNW_004955416:1,867,848...1,914,505
Ensembl chrNW_004955416:1,866,997...1,914,640
JBrowse link
G Selenbp1 selenium binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18435490 NCBI chrNW_004955588:703,928...713,941
Ensembl chrNW_004955588:703,928...714,763
JBrowse link
G Selenop selenoprotein P ISO CTD Direct Evidence: marker/mechanism CTD PMID:18483336 NCBI chrNW_004955426:26,951,003...26,961,839 JBrowse link
G Serpinb5 serpin family B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16331619 NCBI chrNW_004955402:47,248,665...47,276,017
Ensembl chrNW_004955402:47,248,932...47,276,834
JBrowse link
G Sesn2 sestrin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31054940 NCBI chrNW_004955452:7,392,644...7,417,204
Ensembl chrNW_004955452:7,393,007...7,417,304
JBrowse link
G Sfrp1 secreted frizzled related protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17923031 PMID:18716850 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17923031 PMID:18716850 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Sfrp4 secreted frizzled related protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17923031 NCBI chrNW_004955460:5,654,187...5,666,475
Ensembl chrNW_004955460:5,654,288...5,664,219
JBrowse link
G Sfrp5 secreted frizzled related protein 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17923031 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910
JBrowse link
G Sfxn1 sideroflexin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955408:28,054,211...28,105,294
Ensembl chrNW_004955408:28,054,211...28,106,175
JBrowse link
G Sh3tc1 SH3 domain and tetratricopeptide repeats 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955514:2,752,499...2,786,067
Ensembl chrNW_004955514:2,752,058...2,779,401
JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16963246 NCBI chrNW_004955407:42,132,216...42,154,252
Ensembl chrNW_004955407:42,132,165...42,141,992
JBrowse link
G Slc22a15 solute carrier family 22 member 15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955435:19,183,832...19,260,412
Ensembl chrNW_004955435:19,183,832...19,262,041
JBrowse link
G Slco2a1 solute carrier organic anion transporter family member 2A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955501:4,544,065...4,623,615
Ensembl chrNW_004955501:4,543,194...4,625,715
JBrowse link
G Smad3 SMAD family member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:6604412 PMID:8898652 PMID:9214508 PMID:9285566 PMID:9582123 More... NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Smad7 SMAD family member 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17934461 NCBI chrNW_004955402:34,028,184...34,058,949
Ensembl chrNW_004955402:34,028,063...34,058,291
JBrowse link
G Smad9 SMAD family member 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955431:9,117,616...9,184,920 JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F ISO mRNA, protein:increased expression, increased protein binding:multiple (human) RGD PMID:23799036 RGD:10768838 NCBI chrNW_004955405:32,236,876...32,242,716
Ensembl chrNW_004955405:32,236,876...32,242,716
JBrowse link
G Sod2 superoxide dismutase 2 onset ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:10853026 PMID:11836586 PMID:12907644 RGD:1581258 NCBI chrNW_004955439:21,209,101...21,223,538
Ensembl chrNW_004955439:21,209,101...21,224,163
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18413743 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Sp1 Sp1 transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:35072892 NCBI chrNW_004955458:644,435...677,360
Ensembl chrNW_004955458:644,378...677,441
JBrowse link
G Sparc secreted protein acidic and cysteine rich ISO CTD Direct Evidence: marker/mechanism CTD PMID:18458674 NCBI chrNW_004955408:6,100,123...6,122,460
Ensembl chrNW_004955408:6,099,003...6,122,459
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 ISO mRNA:decreased expression:colon (human) RGD PMID:16820046 RGD:1581311 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Stard8 StAR related lipid transfer domain containing 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955475:8,203,624...8,278,319
Ensembl chrNW_004955475:8,245,754...8,278,319
JBrowse link
G Stip1 stress induced phosphoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:33766539 NCBI chrNW_004955422:20,871,921...20,886,952
Ensembl chrNW_004955422:20,870,325...20,886,952
JBrowse link
G Strap serine/threonine kinase receptor associated protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:15720808 NCBI chrNW_004955413:12,533,422...12,558,138
Ensembl chrNW_004955413:12,533,423...12,559,288
JBrowse link
G Sult2b1 sulfotransferase family 2B member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29766219 NCBI chrNW_004955559:1,942,878...1,968,895 JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18507500 PMID:21278247 NCBI chrNW_004955439:9,131,227...9,574,112 JBrowse link
G Tcerg1l transcription elongation regulator 1 like ISO CTD Direct Evidence: marker/mechanism CTD PMID:21278247 NCBI chrNW_004955477:8,652,282...8,850,439
Ensembl chrNW_004955477:8,652,246...8,850,445
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21892161 PMID:24836286 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
G Tcn2 transcobalamin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17389618 NCBI chrNW_004955455:4,827,030...4,849,810
Ensembl chrNW_004955455:4,826,694...4,849,613
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
G Tfpi2 tissue factor pathway inhibitor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19435926 NCBI chrNW_004955432:10,635,626...10,641,345
Ensembl chrNW_004955432:10,631,843...10,641,538
JBrowse link
G Tfrc transferrin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16111806 NCBI chrNW_004955420:12,348,392...12,372,714
Ensembl chrNW_004955420:12,348,821...12,372,691
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO associated with Inflammatory Bowel Diseases;DNA:hypermethylation RGD PMID:22532293 RGD:13432077 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18703712 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017
JBrowse link
G Tk1 thymidine kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955506:4,379,830...4,390,729
Ensembl chrNW_004955506:4,379,830...4,394,713
JBrowse link
G Tlr2 toll like receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16879199 PMID:17892325 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258
JBrowse link
G Tlr4 toll like receptor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16879199 PMID:22180778 NCBI chrNW_004955419:10,190,937...10,201,896
Ensembl chrNW_004955419:10,191,120...10,202,135
JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:23431386 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tnfsf10 TNF superfamily member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:17273769 NCBI chrNW_004955420:2,550,392...2,566,448
Ensembl chrNW_004955420:2,549,142...2,566,564
JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Colorectal Neoplasms
ClinVar Annotator: match by term: Colorectal Neoplasms | ClinVar Annotator: match by term: Colorectal neoplasm
ClinVar PMID:253702 PMID:960674 PMID:1349175 PMID:1359493 PMID:1565143 More... NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp63 tumor protein p63 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15875781 NCBI chrNW_004955420:18,178,639...18,384,786
Ensembl chrNW_004955420:18,176,155...18,384,786
JBrowse link
G Trim28 tripartite motif containing 28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Trpm7 transient receptor potential cation channel subfamily M member 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17823441 NCBI chrNW_004955409:3,690,722...3,787,139
Ensembl chrNW_004955409:3,691,039...3,785,908
JBrowse link
G Txnrd1 thioredoxin reductase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18483336 NCBI chrNW_004955405:38,863,762...38,928,615
Ensembl chrNW_004955405:38,903,918...38,927,410
JBrowse link
G Tymp thymidine phosphorylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15706408 PMID:17047489 NCBI chrNW_004955413:33,505,424...33,509,095
Ensembl chrNW_004955413:33,505,446...33,508,748
JBrowse link
G Tyms thymidylate synthetase ISO mRNA, protein:increased expression, increased activity:adenocarcinoma (rat)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:10523711 PMID:15222106 PMID:15386371 PMID:15500737 PMID:16141798 More... RGD:5133433 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Umps uridine monophosphate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 PMID:19020767 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
JBrowse link
G Ung uracil DNA glycosylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15814641 NCBI chrNW_004955455:10,266,989...10,282,196
Ensembl chrNW_004955455:10,266,989...10,282,196
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:21892161 NCBI chrNW_004955431:17,542,605...17,910,809
Ensembl chrNW_004955431:17,542,979...17,919,191
JBrowse link
G Wif1 WNT inhibitory factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17923031 NCBI chrNW_004955458:11,755,147...11,834,047
Ensembl chrNW_004955458:11,754,120...11,834,047
JBrowse link
G Xaf1 XIAP associated factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17570219 NCBI chrNW_004955467:12,240,075...12,257,595 JBrowse link
G Xpo1 exportin 1 ISO ClinVar Annotator: match by term: Colorectal Neoplasms ClinVar PMID:26619011 NCBI chrNW_004955424:22,370,006...22,420,568
Ensembl chrNW_004955424:22,370,006...22,420,568
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:30510241 PMID:34351699 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25944804 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
G Zmiz1 zinc finger MIZ-type containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24836286 NCBI chrNW_004955437:13,338,077...13,534,283
Ensembl chrNW_004955437:13,337,825...13,494,889
JBrowse link
G Znf292 zinc finger protein 292 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25559195 NCBI chrNW_004955411:14,182,059...14,263,109
Ensembl chrNW_004955411:14,182,059...14,263,109
JBrowse link
G Znf367 zinc finger protein 367 ISO CTD Direct Evidence: marker/mechanism CTD PMID:34351699 NCBI chrNW_004955422:23,516,950...23,535,882
Ensembl chrNW_004955422:23,517,185...23,586,694
JBrowse link
G Zyx zyxin ISO CTD Direct Evidence: marker/mechanism CTD PMID:30697742 NCBI chrNW_004955494:268,844...277,381
Ensembl chrNW_004955494:269,222...276,904
JBrowse link
anus benign neoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:12170190 PMID:12397731 NCBI chrNW_004955434:23,301,623...23,302,304 JBrowse link
ascending colon cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Malignant tumor of ascending colon ClinVar PMID:25741868 PMID:28492532 PMID:30093976 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Malignant tumor of ascending colon ClinVar PMID:9311737 PMID:9718327 PMID:11208710 PMID:11524701 PMID:11601928 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit susceptibility
onset
ISO DNA:missense mutation:CDS, exon 9:p.P286R (human)
DNA:mutations:multiple (human)
DNA:mutations:multiple (human, non-Asian)
RGD PMID:27612425 PMID:28404093 PMID:33125191 RGD:151347640 RGD:151347649 RGD:151347651 NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Rnf43 ring finger protein 43 exacerbates ISO DNA:nonsense mutation, frameshift mutations:CDS:multiple (human) RGD PMID:32236609 RGD:151361217 NCBI chrNW_004955451:4,604,985...4,680,762
Ensembl chrNW_004955451:4,604,985...4,680,762
JBrowse link
Attenuated Adenomatous Polyposis Coli term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Brain tumor-polyposis syndrome 2 ClinVar PMID:1316610 PMID:1324223 PMID:7661930 PMID:8990002 PMID:9950360 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 ISO ClinVar Annotator: match by term: Adenomatous polyposis coli, attenuated ClinVar PMID:19617566 PMID:20551049 PMID:22461326 PMID:24038392 PMID:24357849 More... NCBI chrNW_004955419:26,760,500...26,788,933
Ensembl chrNW_004955419:26,760,500...26,788,933
JBrowse link
Attenuated Familial Adenomatous Polyposis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Attenuated familial adenomatous polyposis ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
Colitis-Associated Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc3 baculoviral IAP repeat containing 3 ameliorates
disease_progression
ISO mRNA:increased expression:colonic mucosa (human) RGD PMID:23388545 PMID:26037070 RGD:11537970 RGD:153323294 NCBI chrNW_004955412:5,624,865...5,643,520
Ensembl chrNW_004955412:5,628,973...5,643,410
JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial treatment ISO RGD PMID:31877961 RGD:151665341 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G Mapk14 mitogen-activated protein kinase 14 exacerbates
ameliorates
ISO RGD PMID:24684847 PMID:29907597 PMID:30541887 RGD:151665503 RGD:151665504 RGD:151665506 NCBI chrNW_004955437:3,836,331...3,884,083
Ensembl chrNW_004955437:3,838,232...3,884,083
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor exacerbates
ameliorates
ISO RGD PMID:21519141 PMID:26712311 PMID:29960049 PMID:30650348 RGD:150520168 RGD:150521528 RGD:150530281 RGD:150530283 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
colon adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abhd5 abhydrolase domain containing 5, lysophosphatidic acid acyltransferase disease_progression ISO human cells in mouse model
mRNA:decreased expression:colon (human)
RGD PMID:30842415 RGD:153002829 NCBI chrNW_004955420:27,484,500...27,508,360
Ensembl chrNW_004955420:27,482,709...27,508,360
JBrowse link
G Anxa7 annexin A7 ISO protein:decreased expression:colon RGD PMID:17708571 RGD:2292654 NCBI chrNW_004955437:18,394,371...18,421,779 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Colon adenocarcinoma ClinVar PMID:24033266 PMID:24728327 PMID:25741868 PMID:27978560 PMID:28492532 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Arid1a AT-rich interaction domain 1A disease_progression ISO protein:decreased expression:colorectum (human) RGD PMID:26980037 RGD:126790569 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Bax BCL2 associated X, apoptosis regulator susceptibility ISO DNA:frameshift mutation: ; RGD PMID:9020077 RGD:734633 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bcl2 BCL2 apoptosis regulator treatment ISO human cells in mouse model RGD PMID:32504672 RGD:125097526 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Btk Bruton tyrosine kinase ISO mRNA:decreased expression:colon (human) RGD PMID:31402962 RGD:151347853 NCBI chrNW_004955503:7,483,819...7,515,085
Ensembl chrNW_004955503:7,482,793...7,515,120
JBrowse link
G Ca12 carbonic anhydrase 12 disease_progression ISO RGD PMID:35847888 RGD:153352327 NCBI chrNW_004955450:11,927,730...11,975,553
Ensembl chrNW_004955450:11,943,340...11,975,928
JBrowse link
G Cacna1d calcium voltage-gated channel subunit alpha1 D disease_progression ISO protein:increased expression:colon (human) RGD PMID:29079724 RGD:152177516 NCBI chrNW_004955430:3,450,151...3,796,983
Ensembl chrNW_004955430:3,268,953...3,794,592
JBrowse link
G Calr calreticulin ISO RGD PMID:18812201 RGD:150521683 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ameliorates ISO human cells in a mouse model RGD PMID:28486105 RGD:153323299 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225
JBrowse link
G Csf1r colony stimulating factor 1 receptor ameliorates ISO mouse cell line in a mouse model
human cells in a mouse model
RGD PMID:24898549 PMID:29436396 PMID:32304779 RGD:150524289 RGD:150524290 RGD:150524303 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Csf2 colony stimulating factor 2 treatment ISO RGD PMID:10830715 RGD:10450245 NCBI chrNW_004955408:3,452,009...3,454,255
Ensembl chrNW_004955408:3,451,965...3,454,312
JBrowse link
G Ctnnb1 catenin beta 1 ISO DNA:mutation RGD PMID:16886601 RGD:1599637 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Daxx death domain associated protein ISO protein:decreased expression:colon: RGD PMID:16569639 RGD:9587838 NCBI chrNW_004955437:1,869,692...1,874,041
Ensembl chrNW_004955437:1,869,572...1,873,050
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO protein:increased expression:colon(human) RGD PMID:19360331 RGD:153298969 NCBI chrNW_004955495:4,800,103...4,807,714
Ensembl chrNW_004955495:4,799,922...4,807,252
JBrowse link
G Fech ferrochelatase ISO mRNA:decreased expression:colon RGD PMID:28075030 RGD:14700888 NCBI chrNW_004955402:41,902,868...41,938,099
Ensembl chrNW_004955402:41,902,868...41,938,174
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chrNW_004955422:19,425,741...19,431,801
Ensembl chrNW_004955422:19,423,591...19,433,885
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chrNW_004955469:10,297,179...10,319,180
Ensembl chrNW_004955469:10,297,179...10,319,180
JBrowse link
G Foxa1 forkhead box A1 ISO mRNA:decreased expression:colon RGD PMID:32839292 RGD:151665753 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461
JBrowse link
G Gata1 GATA binding protein 1 ISO RGD PMID:31069596 RGD:149735196 NCBI chrNW_004955543:334,581...342,042
Ensembl chrNW_004955543:334,061...342,061
JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:20616616 RGD:10402080 NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
JBrowse link
G Il21 interleukin 21 treatment ISO RGD PMID:17695518 RGD:127285540 NCBI chrNW_004955428:18,057,096...18,065,492
Ensembl chrNW_004955428:18,057,096...18,065,492
JBrowse link
G Jak2 Janus kinase 2 treatment
ameliorates
ISO Human cell in mouse model
human cells in mouse model
RGD PMID:22050790 PMID:32504672 RGD:125097526 RGD:127285665 NCBI chrNW_004955434:9,227,897...9,341,208
Ensembl chrNW_004955434:9,227,595...9,341,208
JBrowse link
G Kdm6a lysine demethylase 6A ISO DNA:hypermethylation RGD PMID:33174323 RGD:150429730 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832
JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial ISO mRNA:increased expression:colonic mucosa (human)
mRNA:increased expression:colon (human)
RGD PMID:27793774 PMID:33791222 RGD:151665173 RGD:151665790 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G Lox lysyl oxidase ameliorates ISO RGD PMID:21282564 RGD:150520218 NCBI chrNW_004955521:178,290...193,926
Ensembl chrNW_004955521:185,792...193,926
JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO human cell line and gene in a mouse model RGD PMID:18436711 RGD:155630593 NCBI chrNW_004955563:1,352,638...1,361,598
Ensembl chrNW_004955563:1,352,638...1,361,598
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 ISO RGD PMID:24691442 RGD:13210775 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 ISO RGD PMID:24691442 RGD:13210775 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO mRNA:decreased expression:colon (rat) RGD PMID:16886601 RGD:1599637 NCBI chrNW_004955477:7,103,035...7,375,073
Ensembl chrNW_004955477:7,102,977...7,376,530
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp9 matrix metallopeptidase 9 ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Colon adenocarcinoma ClinVar PMID:25741868 NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor exacerbates ISO human cell line in a mouse model RGD PMID:18538140 RGD:150521533 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Naip NLR family apoptosis inhibitory protein exacerbates ISO mRNA:increased expression:colon (human) RGD PMID:31964418 RGD:153344516 NCBI chrNW_004955575:249,659...283,378 JBrowse link
G Nos2 nitric oxide synthase 2 ISO protein:increased expression:colon (human) RGD PMID:22419013 RGD:153344572 NCBI chrNW_004955481:5,197,957...5,232,406
Ensembl chrNW_004955481:5,201,234...5,231,961
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 ISO mRNA:decreased expression:colon: RGD PMID:19737405 RGD:11556207 NCBI chrNW_004955512:2,914,834...3,333,440
Ensembl chrNW_004955512:2,917,243...3,333,688
JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase ISO RGD PMID:6722784 RGD:5135276 NCBI chrNW_004955467:8,640,044...8,660,950
Ensembl chrNW_004955467:8,640,044...8,660,979
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO DNA:mutation RGD PMID:17575153 RGD:5685670 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Rac1 Rac family small GTPase 1 treatment ISO mRNA:alternative form RGD PMID:10597294 PMID:19561401 RGD:13432049 RGD:13432051 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rad54l RAD54 like ISO ClinVar Annotator: match by term: Colon adenocarcinoma ClinVar PMID:10362365 NCBI chrNW_004955464:11,996,512...12,033,525
Ensembl chrNW_004955464:11,996,512...12,033,490
JBrowse link
G Rnasel ribonuclease L severity ISO RGD PMID:23567782 RGD:40902808 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052
JBrowse link
G Rnaset2 ribonuclease T2 ISO human cells in mouse model RGD PMID:30842415 RGD:153002829 NCBI chrNW_004955439:15,098,210...15,122,015
Ensembl chrNW_004955439:15,098,114...15,125,413
JBrowse link
G Slc22a18 solute carrier family 22 member 18 ameliorates ISO mRNA:decreased expression:colorectum (human) RGD PMID:26196590 RGD:11522474 NCBI chrNW_004955422:14,590,588...14,615,898
Ensembl chrNW_004955422:14,592,250...14,616,890
JBrowse link
G Smc2 structural maintenance of chromosomes 2 severity ISO human cell line in a mouse model RGD PMID:23095742 RGD:151356955 NCBI chrNW_004955419:22,245,843...22,294,508
Ensembl chrNW_004955419:22,245,843...22,294,508
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ameliorates ISO RGD PMID:21282564 RGD:150520218 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Srsf4 serine and arginine rich splicing factor 4 ISO mRNA:decreased expression:colon mucosa (human) RGD PMID:9865741 RGD:11039405 NCBI chrNW_004955452:8,143,850...8,174,830
Ensembl chrNW_004955452:8,142,500...8,174,869
JBrowse link
G Srsf5 serine and arginine rich splicing factor 5 ISO mRNA:decreased expression:colon mucosa (human) RGD PMID:9865741 RGD:11039405 NCBI chrNW_004955466:612,221...617,087
Ensembl chrNW_004955466:612,221...617,753
JBrowse link
G Srsf6 serine and arginine rich splicing factor 6 ISO mRNA:decreased expression:colon mucosa (human) RGD PMID:9865741 RGD:11039405 NCBI chrNW_004955445:13,663,474...13,669,102
Ensembl chrNW_004955445:13,661,209...13,669,102
JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO DNA:SNPs:introns: (rs2280232, rs4327257) (human) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955403:8,156,660...8,192,018
Ensembl chrNW_004955403:8,156,660...8,194,762
JBrowse link
G Stat3 signal transducer and activator of transcription 3 treatment ISO human cells in mouse model
DNA:SNPs:introns: (rs12949918, rs6503695) (human)
RGD PMID:22121102 PMID:32504672 RGD:125097526 RGD:153323313 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Stat5a signal transducer and activator of transcription 5A ISO DNA:SNP:intron: (rs7217728) (human) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955451:16,305,363...16,319,219 JBrowse link
G Stat5b signal transducer and activator of transcription 5B ISO DNA:SNPs:introns: (rs6503691, rs7218653) (human) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955451:16,253,645...16,295,337 JBrowse link
G Stat6 signal transducer and activator of transcription 6 ISO DNA:SNP:3' utr: (rs324015) (human) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955458:4,833,417...4,847,956
Ensembl chrNW_004955458:4,833,515...4,843,273
JBrowse link
G Tert telomerase reverse transcriptase treatment ISO RGD PMID:19903903 RGD:11038656 NCBI chrNW_004955504:649,248...669,796
Ensembl chrNW_004955504:651,779...670,589
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO mRNA:increased expression:colorectum, Cancer Stem-like Cells (human) RGD PMID:31057717 RGD:150429686 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
G Tgfb1 transforming growth factor beta 1 disease_progression ISO RGD PMID:9019169 RGD:13432089 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tp73 tumor protein p73 ISO mRNA:increased expression:colon (human) RGD PMID:30420492 RGD:151347580 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ameliorates
severity
ISO human cell line in a mouse model RGD PMID:28856538 PMID:29296225 RGD:151665195 RGD:151665199 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005
JBrowse link
G Vegfc vascular endothelial growth factor C ISO mRNA:increased expression:colon RGD PMID:18424890 RGD:2315488 NCBI chrNW_004955403:31,016,423...31,130,892 JBrowse link
colon adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 ISO protein:increased expression:: RGD PMID:11809809 RGD:151356508 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Cacna1d calcium voltage-gated channel subunit alpha1 D ISO protein:increased expression:colon (human) RGD PMID:29079724 RGD:152177516 NCBI chrNW_004955430:3,450,151...3,796,983
Ensembl chrNW_004955430:3,268,953...3,794,592
JBrowse link
G Ccnd1 cyclin D1 severity ISO RGD PMID:11375949 RGD:151665121 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Ccnd2 cyclin D2 severity ISO RGD PMID:11375949 RGD:151665121 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Chka choline kinase alpha ISO protein:increased expression:colonic mucosa (human) RGD PMID:10363580 RGD:10401945 NCBI chrNW_004955422:17,710,981...17,766,256
Ensembl chrNW_004955422:17,710,434...17,766,256
JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ISO RGD PMID:26194191 RGD:11086893 NCBI chrNW_004955451:12,312,715...12,348,663
Ensembl chrNW_004955451:12,312,715...12,348,663
JBrowse link
G Rac1 Rac family small GTPase 1 ISO RGD PMID:12865273 RGD:13432048 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rbp4 retinol binding protein 4 ISO protein:increased expression:blood serum (human) RGD PMID:25712946 RGD:329849123 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO mRNA:decreased expression:colon (human) RGD PMID:29875879 RGD:150429665 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
colon cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer3 alkaline ceramidase 3 severity ISO associated with colitis RGD PMID:26938296 RGD:35673322 NCBI chrNW_004955414:14,741,027...14,846,931
Ensembl chrNW_004955414:14,746,529...14,848,151
JBrowse link
G Actr1a actin related protein 1A ISO RGD PMID:26422100 RGD:13831341 NCBI chrNW_004955485:7,926,744...7,944,648
Ensembl chrNW_004955485:7,926,744...7,944,648
JBrowse link
G Acvr2a activin A receptor type 2A ISO DNA:mutation:polyadenine tract RGD PMID:14988818 RGD:2301065 NCBI chrNW_004955440:13,849,926...13,931,374
Ensembl chrNW_004955440:13,849,926...13,931,374
JBrowse link
G Ada adenosine deaminase susceptibility ISO DNA:polymorphisms,haplotypes: :
protein:increased activity:colon
RGD PMID:15820509 PMID:20590444 RGD:152995263 RGD:152995289 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Akt1 AKT serine/threonine kinase 1 treatment
severity
ISO mRNA:increased expression:colon (human)
human cells in mouse model
RGD PMID:31932471 PMID:33360052 RGD:127229954 RGD:152995462 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Akt3 AKT serine/threonine kinase 3 treatment ISO RGD PMID:20811704 RGD:13209140 NCBI chrNW_004955406:6,907,876...7,163,672 JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 treatment ISO RGD PMID:22369161 RGD:13703116 NCBI chrNW_004955405:34,619,780...34,693,616
Ensembl chrNW_004955405:34,623,267...34,693,677
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:22675565 PMID:25741868 PMID:26467025 PMID:26692440 PMID:26837502 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO mRNA, protein:decreased expression:colon RGD PMID:12020819 RGD:625559 NCBI chrNW_004955413:6,471,933...6,480,475
Ensembl chrNW_004955413:6,471,953...6,480,469
JBrowse link
G Arid1a AT-rich interaction domain 1A treatment ISO human cells in mouse model RGD PMID:26069190 RGD:11072938 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Atg101 autophagy related 101 disease_progression ISO RGD PMID:34315829 RGD:153350092 NCBI chrNW_004955547:2,436,974...2,446,849
Ensembl chrNW_004955547:2,436,895...2,446,849
JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Colon cancer ClinVar NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Atr ATR serine/threonine kinase disease_progression ISO DNA:mutations: : RGD PMID:17879369 RGD:150340676 NCBI chrNW_004955508:3,337,036...3,440,313
Ensembl chrNW_004955508:3,337,432...3,440,257
JBrowse link
G Aurka aurora kinase A ISO ClinVar Annotator: match by term: Colon cancer, susceptibility to ClinVar PMID:9771714 PMID:10511710 PMID:12881723 NCBI chrNW_004955445:2,831,073...2,853,151
Ensembl chrNW_004955445:2,831,157...2,853,357
JBrowse link
G Axin1 axin 1 treatment ISO RGD PMID:28032729 RGD:150530464 NCBI chrNW_004955442:16,845,728...16,898,301
Ensembl chrNW_004955442:16,843,152...16,898,430
JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc-binding severity ISO protein:increased expression:colon,serum RGD PMID:25561225 RGD:153350136 NCBI chrNW_004955573:902,153...910,481
Ensembl chrNW_004955573:899,798...912,272
JBrowse link
G Bad BCL2 associated agonist of cell death treatment ISO RGD PMID:21214291 RGD:10053668 NCBI chrNW_004955422:20,795,585...20,809,039
Ensembl chrNW_004955422:20,795,676...20,809,245
JBrowse link
G Bcl2 BCL2 apoptosis regulator treatment ISO RGD PMID:21214291 RGD:10053668 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Bik BCL2 interacting killer treatment ISO RGD PMID:17636408 RGD:14394819 NCBI chrNW_004955413:28,277,727...28,294,032 JBrowse link
G Birc3 baculoviral IAP repeat containing 3 disease_progression ISO protein:increased expression:colon (human) RGD PMID:22751125 RGD:152998979 NCBI chrNW_004955412:5,624,865...5,643,520
Ensembl chrNW_004955412:5,628,973...5,643,410
JBrowse link
G Brca1 BRCA1 DNA repair associated susceptibility
disease_progression
ISO DNA:mutation RGD PMID:7907678 PMID:33583275 RGD:126925959 RGD:1599497 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:22120039 RGD:9586351 NCBI chrNW_004955495:7,959,033...7,989,216
Ensembl chrNW_004955495:7,957,510...7,988,498
JBrowse link
G Calr calreticulin treatment
ameliorates
ISO human cell line and recombinant gene in a mouse model
protein:increased expression:colon (human)
RGD PMID:17187072 PMID:19256344 PMID:19881547 PMID:20480531 PMID:29573475 RGD:150521684 RGD:150521692 RGD:150521693 RGD:150521694 RGD:150521701 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372
JBrowse link
G Casp3 caspase 3 disease_progression ISO protein:decreased expression:colon RGD PMID:17805550 PMID:23979166 RGD:13209142 RGD:13209143 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Casp7 caspase 7 disease_progression ISO RGD PMID:23979166 RGD:13209143 NCBI chrNW_004955431:18,685,408...18,723,221
Ensembl chrNW_004955431:18,686,190...18,723,524
JBrowse link
G Ccnd2 cyclin D2 ISO mRNA:increased expression:colon RGD PMID:15059925 RGD:2289181 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Ccng2 cyclin G2 ISO mRNA:decreased expression:colon,rectum (human) RGD PMID:27982046 RGD:151361200 NCBI chrNW_004955433:1,799,405...1,807,050
Ensembl chrNW_004955433:1,798,732...1,807,827
JBrowse link
G Cd274 CD274 molecule treatment ISO RGD PMID:28424330 RGD:41410791 NCBI chrNW_004955434:9,487,309...9,508,366
Ensembl chrNW_004955434:9,487,315...9,505,904
JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Malignant tumor of colon ClinVar PMID:15235021 PMID:16924464 PMID:17545690 PMID:19268661 PMID:20233471 More... NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A disease_progression ISO mRNA,protein:increased expression:colonic mucosa: RGD PMID:24845563 RGD:9587457 NCBI chrNW_004955495:4,467,317...4,499,419
Ensembl chrNW_004955495:4,468,202...4,499,171
JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:15095295 PMID:21244692 PMID:22114986 PMID:22419737 PMID:22862163 More... NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Chka choline kinase alpha ISO mRNA, protein:increased expression:colon (rat) RGD PMID:10622531 RGD:10401869 NCBI chrNW_004955422:17,710,981...17,766,256
Ensembl chrNW_004955422:17,710,434...17,766,256
JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex ISO protein:increased expression:colon (human) RGD PMID:16774932 RGD:153305944 NCBI chrNW_004955507:6,066,026...6,102,066
Ensembl chrNW_004955507:6,067,203...6,102,001
JBrowse link
G Col6a3 collagen type VI alpha 3 chain ISO protein:increased expression:serum (human) RGD PMID:32245981 RGD:401900121 NCBI chrNW_004955542:2,869,183...2,950,569
Ensembl chrNW_004955542:2,887,723...2,949,062
JBrowse link
G Cripto cripto, EGF-CFC family member treatment ISO RGD PMID:15173016 RGD:11561894 NCBI chrNW_004955420:25,476,975...25,479,969
Ensembl chrNW_004955420:25,477,122...25,479,969
JBrowse link
G Cysltr1 cysteinyl leukotriene receptor 1 ISO associated with Experimental Colitis RGD PMID:28410235 RGD:40903055 NCBI chrNW_004955557:1,667,518...1,702,272 JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 ameliorates ISO associated with colitis; RGD PMID:31278373 RGD:155791667 NCBI chrNW_004955451:17,655,659...17,690,117
Ensembl chrNW_004955451:17,653,125...17,690,117
JBrowse link
G Esr2 estrogen receptor 2 ISO RGD PMID:19141699 RGD:8694174 NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit disease_progression ISO RGD PMID:19773751 RGD:126781702 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 treatment ISO human cells in mouse model RGD PMID:17599042 RGD:150520062 NCBI chrNW_004955408:29,370,480...29,383,531
Ensembl chrNW_004955408:29,370,468...29,383,971
JBrowse link
G Gpx1 glutathione peroxidase 1 treatment ISO associated with Inflammation
mRNA, protein:increased expression:colon (human)
RGD PMID:21868509 PMID:28045589 RGD:152995480 RGD:152995496 NCBI chrNW_004955532:1,298,336...1,298,830 JBrowse link
G Gpx2 glutathione peroxidase 2 treatment ISO associated with Inflammation RGD PMID:28045589 RGD:152995480 NCBI chrNW_004955466:4,983,532...4,987,780
Ensembl chrNW_004955466:4,984,631...4,987,457
JBrowse link
G Gpx3 glutathione peroxidase 3 disease_progression ISO associated with Experimental Colitis RGD PMID:23221387 RGD:151665510 NCBI chrNW_004955408:2,622,162...2,629,088
Ensembl chrNW_004955408:2,622,741...2,629,032
JBrowse link
G Gpx4 glutathione peroxidase 4 disease_progression ISO mRNA, protein:increased expression:colon (human) RGD PMID:21868509 RGD:152995496 NCBI chrNW_004955495:6,767,969...6,772,256
Ensembl chrNW_004955495:6,767,975...6,772,178
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta treatment ISO RGD PMID:22561258 RGD:10045586 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Hs3st2 heparan sulfate-glucosamine 3-sulfotransferase 2 ISO DNA:hypermethylation:promoter (human) RGD PMID:12527896 RGD:2317633 NCBI chrNW_004955493:1,451,960...1,545,156
Ensembl chrNW_004955493:1,451,905...1,545,197
JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 ISO protein:increased expression:colon (human) RGD PMID:16774932 RGD:153305944 NCBI chrNW_004955538:1,469,544...1,475,010
Ensembl chrNW_004955538:1,469,544...1,475,019
JBrowse link
G Htra1 HtrA serine peptidase 1 disease_progression ISO DNA:SNP:cds: (rs1049331) (human) RGD PMID:32218415 RGD:152985527 NCBI chrNW_004955477:761,127...808,396
Ensembl chrNW_004955477:761,127...808,994
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO associated with Obesity;protein:increased expression:large intestine mucosa RGD PMID:20143392 RGD:7495781 NCBI chrNW_004955536:611,965...658,647
Ensembl chrNW_004955536:612,774...658,647
JBrowse link
G Il10 interleukin 10 no_association ISO DNA:SNP:promoter:-592C>A (rs1800872) (human)
DNA:SNP: :rs1800896 (human)
RGD PMID:27468578 RGD:11534627 NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779
JBrowse link
G Il33 interleukin 33 treatment ISO associated with colitis; RGD PMID:31407335 RGD:39939040 NCBI chrNW_004955434:10,145,449...10,187,595
Ensembl chrNW_004955434:10,171,812...10,188,948
JBrowse link
G Il7r interleukin 7 receptor disease_progression ISO DNA:deletion: : RGD PMID:29755661 RGD:126779581 NCBI chrNW_004955426:20,785,896...20,818,512
Ensembl chrNW_004955426:20,787,471...20,818,577
JBrowse link
G Jak2 Janus kinase 2 treatment ISO RGD PMID:33360052 RGD:127229954 NCBI chrNW_004955434:9,227,897...9,341,208
Ensembl chrNW_004955434:9,227,595...9,341,208
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO RNA:decreased expression:colon (human) RGD PMID:11751871 RGD:151347667 NCBI chrNW_004955415:31,876,508...31,878,289
Ensembl chrNW_004955415:31,876,793...31,877,836
JBrowse link
G Kdm3a lysine demethylase 3A severity ISO human gene in a mouse model RGD PMID:19858293 RGD:9590225 NCBI chrNW_004955424:1,164,384...1,218,607
Ensembl chrNW_004955424:1,171,827...1,218,607
JBrowse link
G Kdm5c lysine demethylase 5C ISO mRNA:increased expression:colon (human) RGD PMID:33042830 RGD:151361176 NCBI chrNW_004955475:243,666...278,064
Ensembl chrNW_004955475:243,666...278,627
JBrowse link
G Lalba lactalbumin alpha onset ISO RGD PMID:25036966 RGD:38599174 NCBI chrNW_004955500:7,487,603...7,489,573
Ensembl chrNW_004955500:7,487,603...7,489,573
JBrowse link
G Lgals3 galectin 3 treatment ISO RGD PMID:28032729 RGD:150530464 NCBI chrNW_004955409:8,448,120...8,452,437
Ensembl chrNW_004955409:8,447,774...8,452,438
JBrowse link
G Lif LIF interleukin 6 family cytokine ameliorates ISO human cells in mouse model RGD PMID:29899555 RGD:151356919 NCBI chrNW_004955455:4,489,515...4,505,439
Ensembl chrNW_004955455:4,489,421...4,497,940
JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial susceptibility ISO mRNA:increased expression:colon (human)
DNA:SNPs:introns: (rs4809960, rs6022999) (human)
DNA:SNPs:multiple (human)
DNA:SNP:intron: IVS4-66T>G, (rs4809958) (human)
RGD PMID:16180015 PMID:19706847 PMID:28811712 PMID:31740231 RGD:151361183 RGD:151665174 RGD:151665177 RGD:151665338 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G LOC102026028 cytochrome P450 2E1 treatment ISO RGD PMID:30720227 RGD:14700924 NCBI chrNW_004955507:6,293,162...6,303,255
Ensembl chrNW_004955507:6,289,576...6,304,193
JBrowse link
G Lrp1b LDL receptor related protein 1B ISO human cells in a mouse moel RGD PMID:28408316 RGD:150429777 NCBI chrNW_004955440:7,048,527...8,475,566
Ensembl chrNW_004955440:7,050,135...8,475,122
JBrowse link
G Map2k3 mitogen-activated protein kinase kinase 3 ISO RGD PMID:24233520 RGD:7495808 NCBI chrNW_004955577:1,225,033...1,249,510
Ensembl chrNW_004955577:1,237,287...1,248,541
JBrowse link
G Map2k7 mitogen-activated protein kinase kinase 7 ISO mRNA:splice variant:exon 2: (human) RGD PMID:32601196 RGD:155230826 NCBI chrNW_004955563:1,352,638...1,361,598
Ensembl chrNW_004955563:1,352,638...1,361,598
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 treatment ISO RGD PMID:19876598 RGD:401976467 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020
JBrowse link
G Mapk14 mitogen-activated protein kinase 14 susceptibility ISO DNA:SNP:intron: (rs10807156) (human)
DNA:SNP:intron: (rs851016) (human)
RGD PMID:23027623 PMID:23859041 RGD:13217411 RGD:150573807 NCBI chrNW_004955437:3,836,331...3,884,083
Ensembl chrNW_004955437:3,838,232...3,884,083
JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member ameliorates ISO human cells in mouse model RGD PMID:29899555 RGD:151356919 NCBI chrNW_004955413:238,043...243,317 JBrowse link
G Mki67 marker of proliferation Ki-67 treatment ISO RGD PMID:33360052 RGD:127229954 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Mlh1 mutL homolog 1 disease_progression ISO ClinVar Annotator: match by term: Colon cancer | ClinVar Annotator: match by term: Malignant tumor of colon RGD
ClinVar
PMID:8566964 PMID:8574961 PMID:8592341 PMID:08808596 PMID:9311737 More... RGD:126790577 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Msh2 mutS homolog 2 disease_progression
no_association
ISO DNA, mRNA:loss of heterogeneity, increased expression: :colon
ClinVar Annotator: match by term: Colon cancer
DNA:SNP:intron:IVS10+12G>A (human)
RGD
ClinVar
PMID:25741868 PMID:28411881 PMID:28492532 PMID:29715107 PMID:33357406 RGD:126790554 RGD:126790577 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Mtor mechanistic target of rapamycin kinase treatment ISO RGD PMID:33360052 RGD:127229954 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Mtus1 microtubule associated scaffold protein 1 ISO mRNA, protein:decreased expression:colon (human) RGD PMID:19956880 RGD:2317016 NCBI chrNW_004955552:1,867,477...2,040,659
Ensembl chrNW_004955552:1,924,922...2,040,653
JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming ISO mRNA:decreased expression:colon
protein:decreased expression:colon
RGD PMID:17847023 PMID:20459814 RGD:7349368 RGD:7349371 NCBI chrNW_004955476:11,108,826...11,135,697
Ensembl chrNW_004955476:11,108,826...11,135,697
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Colon cancer | ClinVar Annotator: match by term: Malignant tumor of colon ClinVar PMID:9536098 PMID:11818965 PMID:12606733 PMID:12853198 PMID:12917422 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor ameliorates ISO RGD PMID:23184679 RGD:150520021 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Nanog Nanog homeobox treatment ISO RGD PMID:22641368 RGD:7240527 NCBI chrNW_004955413:6,561,323...6,565,770 JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO DNA:amplification:cds (human) RGD PMID:10567404 RGD:9590137 NCBI chrNW_004955422:26,564,535...26,639,516
Ensembl chrNW_004955422:26,564,037...26,632,675
JBrowse link
G Nf1 neurofibromin 1 ISO mRNA:increased expression:colon (human) RGD PMID:15840687 RGD:150429699 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179
JBrowse link
G Nqo1 NAD(P)H quinone dehydrogenase 1 ISO RGD PMID:19424637 RGD:5133247 NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604
JBrowse link
G Nr5a2 nuclear receptor subfamily 5 group A member 2 ISO RNA:increased expression:colon (human) RGD PMID:28710032 RGD:153344627 NCBI chrNW_004955406:36,263,257...36,415,494
Ensembl chrNW_004955406:36,263,184...36,415,525
JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 ISO RGD PMID:18663744 RGD:13432043 NCBI chrNW_004955524:3,234,111...3,241,445
Ensembl chrNW_004955524:3,234,111...3,241,173
JBrowse link
G Pik3r5 phosphoinositide-3-kinase regulatory subunit 5 ISO DNA:hypermethylation RGD PMID:15123805 RGD:13432047 NCBI chrNW_004955467:8,025,231...8,091,406
Ensembl chrNW_004955467:8,065,857...8,091,486
JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:12846734 PMID:14741187 PMID:15805161 PMID:21493627 PMID:25646624 More... NCBI chrNW_004955411:5,988,100...6,434,369
Ensembl chrNW_004955411:5,990,316...6,432,301
JBrowse link
G Plcg1 phospholipase C gamma 1 treatment ISO RGD PMID:7812955 RGD:151356942 NCBI chrNW_004955445:15,787,496...15,823,859
Ensembl chrNW_004955445:15,787,496...15,823,859
JBrowse link
G Plk4 polo like kinase 4 ISO protein:increased expression:colon RGD PMID:26439168 RGD:11075990 NCBI chrNW_004955428:13,548,485...13,566,786
Ensembl chrNW_004955428:13,549,000...13,566,516
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:25741868 NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:25741868 PMID:26467025 PMID:28492532 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO DNA:frameshift mutation:c.472delA (human) RGD PMID:10394368 RGD:1601444 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO RGD PMID:20622004 RGD:5685669 NCBI chrNW_004955426:25,079,718...25,102,090
Ensembl chrNW_004955426:25,079,718...25,102,090
JBrowse link
G Pten phosphatase and tensin homolog ISO mRNA:decreased expression:colon (human) RGD PMID:21806946 RGD:12859043 NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
G Ptger3 prostaglandin E receptor 3 ISO mRNA:decreased expression:colon mucosa (rat) RGD PMID:15247185 RGD:9850265 NCBI chrNW_004955423:21,096,926...21,164,435 JBrowse link
G Ptgis prostaglandin I2 synthase exacerbates ISO RGD PMID:26611322 RGD:11536046 NCBI chrNW_004955445:8,624,228...8,663,385
Ensembl chrNW_004955445:8,623,430...8,677,658
JBrowse link
G Ptpn13 protein tyrosine phosphatase non-receptor type 13 treatment ISO RGD PMID:29899829 RGD:152975627 NCBI chrNW_004955474:2,988,109...3,140,520
Ensembl chrNW_004955474:2,988,639...3,140,513
JBrowse link
G Ptprt protein tyrosine phosphatase receptor type T exacerbates ISO RGD PMID:20133777 PMID:27447856 RGD:150520184 RGD:150520192 NCBI chrNW_004955445:14,185,751...14,961,000
Ensembl chrNW_004955445:14,185,732...14,952,980
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein susceptibility ISO DNA:SNPs:3'utr: (rs1051669, rs11571475) (human) RGD PMID:26735576 RGD:151361212 NCBI chrNW_004955454:6,206,195...6,227,859
Ensembl chrNW_004955454:6,215,129...6,231,726
JBrowse link
G Rictor RPTOR independent companion of MTOR complex 2 severity ISO mRNA:increased expression:colon (human)
human cells in mouse model
protein:increased expression:colon (human)
RGD PMID:20226010 PMID:24244675 PMID:31932471 RGD:152995458 RGD:152995462 RGD:152995494 NCBI chrNW_004955426:23,468,112...23,582,587
Ensembl chrNW_004955426:23,468,112...23,582,587
JBrowse link
G Rnaset2 ribonuclease T2 ISO RGD PMID:32197460 RGD:153002804 NCBI chrNW_004955439:15,098,210...15,122,015
Ensembl chrNW_004955439:15,098,114...15,125,413
JBrowse link
G Rnf43 ring finger protein 43 disease_progression ISO mRNA:increased expression:colon (human) RGD PMID:26350900 RGD:11053240 NCBI chrNW_004955451:4,604,985...4,680,762
Ensembl chrNW_004955451:4,604,985...4,680,762
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 treatment ISO RGD PMID:33360052 RGD:127229954 NCBI chrNW_004955451:3,181,085...3,225,610 JBrowse link
G Slc7a5 solute carrier family 7 member 5 treatment ISO RGD PMID:19900191 RGD:151361295 NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310
JBrowse link
G Smad2 SMAD family member 2 treatment ISO RGD PMID:33360052 RGD:127229954 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844
JBrowse link
G Smad4 SMAD family member 4 treatment
severity
ISO mRNA:decreased expression:colon (human) RGD PMID:31932471 PMID:33360052 RGD:127229954 RGD:152995462 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Smo smoothened, frizzled class receptor ISO protein:increased expression:colon RGD PMID:23098507 RGD:150340555 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Socs1 suppressor of cytokine signaling 1 ameliorates ISO RGD PMID:19469017 RGD:150573701 NCBI chrNW_004955442:7,321,337...7,323,109
Ensembl chrNW_004955442:7,321,337...7,323,109
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase disease_progression ISO DNA:nonsense mutation
ClinVar Annotator: match by term: Colon cancer, advanced
RGD
ClinVar
PMID:7678609 PMID:9988270 PMID:25157968 RGD:150521542 RGD:1601371 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 ISO protein:increased expression:colon (human) RGD PMID:17310252 RGD:11038730 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029
JBrowse link
G Stat3 signal transducer and activator of transcription 3 treatment
ameliorates
ISO human cells in mouse model RGD PMID:29899555 PMID:33360052 RGD:127229954 RGD:151356919 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
G Tff3 trefoil factor 3 ISO protein:decreased expression:colon RGD PMID:17847023 RGD:7349371 NCBI chrNW_004955407:39,398,534...39,401,085
Ensembl chrNW_004955407:39,398,074...39,401,248
JBrowse link
G Tgfb1 transforming growth factor beta 1 treatment ISO RGD PMID:33360052 RGD:127229954 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb3 transforming growth factor beta 3 disease_progression ISO RGD PMID:18360718 RGD:13432091 NCBI chrNW_004955438:33,129...55,180
Ensembl chrNW_004955438:29,415...55,180
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO DNA:mutation:polyadenine tract RGD PMID:14988818 RGD:2301065 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 treatment ISO associated with Experimental Colitis
mRNA,protein:increased expression:colon (human)
protein:decreased expression:colon (human)
RGD PMID:24099634 PMID:27991929 RGD:151347529 RGD:151347624 NCBI chrNW_004955436:21,566,591...21,581,551
Ensembl chrNW_004955436:21,566,423...21,578,469
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 exacerbates ISO mRNA:increased expression:colon (human) RGD PMID:29441938 RGD:151665201 NCBI chrNW_004955417:26,997,572...27,085,511
Ensembl chrNW_004955417:26,998,513...27,083,005
JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:21268133 RGD:5135051 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Wnt5a Wnt family member 5A treatment ISO RGD PMID:28032729 RGD:150530464 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO ClinVar Annotator: match by term: Colon cancer ClinVar PMID:23054243 PMID:25637381 PMID:25741868 PMID:27233470 PMID:28492532 More... NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439
JBrowse link
colon carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Aopep aminopeptidase O (putative) ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 NCBI chrNW_004955422:21,680,488...22,020,935 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:1316610 PMID:1324223 PMID:1338764 PMID:1338904 PMID:1528264 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Carcinoma of colon
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:8845835 PMID:9792409 PMID:9887333 PMID:10425038 PMID:10817650 More... NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Axin2 axin 2 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:11017067 PMID:15042511 PMID:21416598 PMID:21472303 PMID:24033266 More... NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Bard1 BRCA1 associated RING domain 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:19197335 PMID:20077502 PMID:25741868 PMID:26350354 PMID:26467025 More... NCBI chrNW_004955457:1,187,942...1,258,475
Ensembl chrNW_004955457:1,187,942...1,253,803
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9020077 PMID:9453486 PMID:9531611 PMID:10984511 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bcl10 BCL10 immune signaling adaptor ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9989495 NCBI chrNW_004955423:8,710,231...8,720,530
Ensembl chrNW_004955423:8,709,890...8,722,050
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:12417513 PMID:14526373 PMID:15235019 PMID:18823382 PMID:23399955 More... NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase treatment ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma RGD
ClinVar
PMID:12068308 PMID:12198537 PMID:12447372 PMID:12460918 PMID:12460919 More... RGD:11567267 NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 PMID:26295337 PMID:26467025 PMID:28492532 PMID:31911673 More... NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brca2 BRCA2 DNA repair associated ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:11030418 PMID:12491487 PMID:15744044 PMID:15937982 PMID:15983021 More... NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Brip1 BRCA1 interacting helicase 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:16116423 PMID:16280053 PMID:17033622 PMID:18483852 PMID:21964575 More... NCBI chrNW_004955451:2,705,834...2,820,610
Ensembl chrNW_004955451:2,707,793...2,818,592
JBrowse link
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9521327 NCBI chrNW_004955470:3,152,798...3,190,185
Ensembl chrNW_004955470:3,152,758...3,191,888
JBrowse link
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:9521327 PMID:24728327 PMID:25741868 PMID:28492532 NCBI chrNW_004955416:7,105,302...7,159,121
Ensembl chrNW_004955416:7,105,261...7,160,012
JBrowse link
G Calr calreticulin treatment ISO human cells and recombinant protein in a mouse model RGD PMID:9858521 RGD:150521687 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372
JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:25583476 PMID:25741868 PMID:26467025 PMID:28492532 PMID:30287823 More... NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967
JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:14612911 PMID:15087378 PMID:17721994 PMID:18571837 PMID:21244692 More... NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein ISO RGD PMID:16391854 RGD:7488899 NCBI chrNW_004955442:19,358,202...19,388,552
Ensembl chrNW_004955442:19,358,081...19,388,815
JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:9065402 PMID:9294210 PMID:10192393 PMID:23033978 PMID:24614104 More... NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:8845835 PMID:17910737 PMID:19404735 PMID:20305132 PMID:23555315 More... NCBI chrNW_004955412:10,533,174...10,567,364
Ensembl chrNW_004955412:10,533,441...10,567,612
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 treatment ISO RGD PMID:30381616 RGD:27095891 NCBI chrNW_004955433:748,392...750,890
Ensembl chrNW_004955433:748,284...750,927
JBrowse link
G Dcc DCC netrin 1 receptor ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:8188295 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:10649492 NCBI chrNW_004955463:3,599,415...3,981,187
Ensembl chrNW_004955463:3,598,985...3,990,849
JBrowse link
G Efnb2 ephrin B2 ameliorates ISO human cells in mouse model RGD PMID:15083195 RGD:153305907 NCBI chrNW_004955404:5,000,906...5,030,068
Ensembl chrNW_004955404:5,000,906...5,030,126
JBrowse link
G Ep300 E1A binding protein p300 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:10700188 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar NCBI chrNW_004955441:14,155,084...14,167,584
Ensembl chrNW_004955441:14,155,082...14,169,161
JBrowse link
G Fancc FA complementation group C ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 NCBI chrNW_004955422:22,031,825...22,246,478
Ensembl chrNW_004955422:22,032,258...22,247,044
JBrowse link
G Fance FA complementation group E ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 PMID:28492532 PMID:34687117 NCBI chrNW_004955437:3,369,127...3,382,072
Ensembl chrNW_004955437:3,369,042...3,382,783
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:1908846 PMID:7649548 PMID:7670477 PMID:7702086 PMID:7773297 More... NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590
JBrowse link
G Flcn folliculin ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:12843323 PMID:15805188 PMID:15852235 PMID:16199547 PMID:18234728 More... NCBI chrNW_004955577:672,774...694,140
Ensembl chrNW_004955577:672,410...694,140
JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472
JBrowse link
G Flt3lg fms related receptor tyrosine kinase 3 ligand treatment ISO RGD PMID:10842197 RGD:11049504 NCBI chrNW_004955559:1,364,056...1,371,245
Ensembl chrNW_004955559:1,365,938...1,370,002
JBrowse link
G Flt4 fms related receptor tyrosine kinase 4 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955408:98,995...137,922
Ensembl chrNW_004955408:107,056...140,056
JBrowse link
G Foxa1 forkhead box A1 disease_progression ISO RGD PMID:33296605 RGD:151665748 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461
JBrowse link
G Hpgd 15-hydroxyprostaglandin dehydrogenase ISO DNA:::adenoviral delivery of human gene in mouse model of colon cancer RGD PMID:19494278 RGD:5688759 NCBI chrNW_004955403:32,569,841...32,614,860
Ensembl chrNW_004955403:32,569,841...32,613,763
JBrowse link
G Igf2r insulin like growth factor 2 receptor ISO protein:increased expression:serum: RGD PMID:29940770 RGD:14985218 NCBI chrNW_004955439:20,754,915...20,874,759
Ensembl chrNW_004955439:20,752,855...20,851,281
JBrowse link
G Kdr kinase insert domain receptor treatment ISO ClinVar Annotator: match by term: Carcinoma of colon RGD
ClinVar
PMID:12415261 RGD:126925192 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO protein:increased expression:colon RGD PMID:20433758 RGD:150523761 NCBI chrNW_004955500:7,850,782...7,891,703
Ensembl chrNW_004955500:7,853,292...7,886,067
JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar NCBI chrNW_004955408:32,928,519...33,265,049
Ensembl chrNW_004955408:32,928,519...33,264,727
JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:7757073 PMID:8521398 PMID:8571956 PMID:8574961 PMID:8581513 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:11317354 PMID:28492532 PMID:35292633 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:187139 PMID:625353 PMID:1061282 PMID:3258778 PMID:3616036 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:1548301 PMID:3049887 PMID:8838326 PMID:9345684 PMID:9536098 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:517270 PMID:9536098 PMID:11051386 PMID:11295288 PMID:11818965 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor treatment ISO mouse cell line in a mouse model RGD PMID:20823152 RGD:150520170 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Nbn nibrin ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:11325820 PMID:14559852 PMID:15338273 PMID:16474176 PMID:16810201 More... NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133
JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:2674680 PMID:3102434 PMID:8120410 PMID:16291983 PMID:18390968 More... NCBI chrNW_004955435:18,001,517...18,009,105
Ensembl chrNW_004955435:18,001,517...18,009,103
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Carcinoma of colon
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:3040479 PMID:18053174 PMID:21285249 PMID:21365267 PMID:21618343 More... NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:24033266 PMID:25741868 PMID:28492532 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373
JBrowse link
G Pdgfrl platelet derived growth factor receptor like ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:7898930 NCBI chrNW_004955552:2,041,267...2,077,971
Ensembl chrNW_004955552:2,041,267...2,077,972
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:285143 PMID:2402700 PMID:9536098 PMID:9683794 PMID:10037723 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:15322521 PMID:15766587 PMID:19966286 PMID:25032700 PMID:25637381 More... NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
ClinVar PMID:15766587 PMID:16199547 PMID:23230001 PMID:23263490 PMID:23447401 More... NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma ClinVar PMID:10394368 PMID:25741868 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Prf1 perforin 1 ISO RGD PMID:22420317 RGD:6482822 NCBI chrNW_004955437:20,700,912...20,705,076
Ensembl chrNW_004955437:20,700,718...20,706,929
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:10555148 PMID:12372056 PMID:21194675 PMID:21659347 PMID:21956414 More... NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
G Ptpn12 protein tyrosine phosphatase non-receptor type 12 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:7509295 NCBI chrNW_004955410:7,556,283...7,599,170
Ensembl chrNW_004955410:7,557,103...7,599,139
JBrowse link
G Ptprj protein tyrosine phosphatase receptor type J ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:12089527 PMID:25741868 PMID:33116287 NCBI chrNW_004955422:396,266...438,792
Ensembl chrNW_004955422:399,357...443,054
JBrowse link
G Rad51c RAD51 paralog C ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:16199547 PMID:20400964 PMID:21537932 PMID:21990120 PMID:22538716 More... NCBI chrNW_004955451:4,053,195...4,178,226
Ensembl chrNW_004955451:4,145,226...4,178,487
JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955481:9,795,102...9,810,426
Ensembl chrNW_004955481:9,795,102...9,810,426
JBrowse link
G Rad54b RAD54 homolog B ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:10362364 NCBI chrNW_004955417:10,598,295...10,685,999
Ensembl chrNW_004955417:10,597,450...10,686,005
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:25058500 PMID:27165003 NCBI chrNW_004955411:36,068,248...36,246,607
Ensembl chrNW_004955411:36,067,022...36,246,517
JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:9582123 PMID:10398437 PMID:11920286 PMID:15235019 PMID:16152648 More... NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO protein:increased phosphorylating activity:colon mucosa RGD PMID:2436227 RGD:150521541 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:14623934 PMID:15121768 PMID:25186949 PMID:25741868 PMID:26467025 More... NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
G Tgfb1 transforming growth factor beta 1 disease_progression ISO RGD PMID:11166150 RGD:13432074 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb2 transforming growth factor beta 2 disease_progression ISO RGD PMID:10416598 PMID:11166150 RGD:13432074 RGD:13432084 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tlr3 toll like receptor 3 ISO protein:increased expression:colon RGD PMID:23467704 RGD:21079438 NCBI chrNW_004955403:22,977,882...23,001,392
Ensembl chrNW_004955403:22,979,120...23,001,467
JBrowse link
G Tnfrsf17 TNF receptor superfamily member 17 ISO RGD PMID:11104810 RGD:2317311 NCBI chrNW_004955442:6,626,434...6,651,193
Ensembl chrNW_004955442:6,626,399...6,629,931
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO protein:increased expression:serum (human) RGD PMID:1655258 RGD:5131434 NCBI chrNW_004955413:3,982,670...3,996,320
Ensembl chrNW_004955413:3,981,400...3,996,021
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B ISO protein:increased expression:serum (human) RGD PMID:1655258 RGD:5131434 NCBI chrNW_004955486:1,790,531...1,817,986
Ensembl chrNW_004955486:1,792,115...1,818,362
JBrowse link
G Toe1 target of EGR1, exonuclease ISO ClinVar Annotator: match by term: Carcinoma of colon ClinVar PMID:18271935 PMID:25741868 PMID:28492532 NCBI chrNW_004955464:12,924,185...12,927,567
Ensembl chrNW_004955464:12,924,191...12,927,567
JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colon carcinoma | ClinVar Annotator: match by term: Colonic carcinoma ClinVar PMID:1565143 PMID:1683921 PMID:1978757 PMID:7887414 PMID:8023157 More... NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tyms thymidylate synthetase ISO human tumor in mouse model RGD PMID:17848948 RGD:5133430 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 ISO mRNA:increased expression:colonic mucosa (human) RGD PMID:8541345 RGD:11352739 NCBI chrNW_004955524:3,007,074...3,009,886
Ensembl chrNW_004955524:3,006,147...3,018,772
JBrowse link
G Vegfa vascular endothelial growth factor A treatment ISO RGD PMID:18657413 RGD:15003195 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
Colonic Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta2 actin alpha 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955425:4,023,001...4,039,980
Ensembl chrNW_004955425:4,026,430...4,040,747
JBrowse link
G Actg2 actin gamma 2, smooth muscle ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955424:11,779,805...11,802,446
Ensembl chrNW_004955424:11,779,597...11,802,446
JBrowse link
G Aldh1b1 aldehyde dehydrogenase 1 family member B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25641190 NCBI chrNW_004955419:28,155,174...28,159,752
Ensembl chrNW_004955419:28,155,174...28,159,752
JBrowse link
G Alox12b arachidonate 12-lipoxygenase, 12R type ISO CTD Direct Evidence: marker/mechanism CTD PMID:30258081 NCBI chrNW_004955467:8,876,186...8,887,980
Ensembl chrNW_004955467:8,876,027...8,888,033
JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:14569062 PMID:18927292 PMID:30258081 NCBI chrNW_004955546:2,495,226...2,550,909
Ensembl chrNW_004955546:2,494,819...2,550,909
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:7959691 PMID:17963004 PMID:20223039 PMID:20685668 PMID:25525159 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955422:14,051,140...14,053,521
Ensembl chrNW_004955422:14,051,140...14,053,521
JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:23807571 PMID:25614872 PMID:25741868 PMID:28492532 PMID:30482293 More... NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Atp7a ATPase copper transporting alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:17510416 NCBI chrNW_004955557:1,355,471...1,515,725
Ensembl chrNW_004955557:1,355,397...1,515,393
JBrowse link
G Axin2 axin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Bak1 BCL2 antagonist/killer 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18349538 NCBI chrNW_004955437:2,036,415...2,041,997
Ensembl chrNW_004955437:2,036,415...2,041,997
JBrowse link
G Bap1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 NCBI chrNW_004955430:2,391,970...2,400,645
Ensembl chrNW_004955430:2,390,524...2,400,645
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:17404573 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bcl2 BCL2 apoptosis regulator ISO mRNA:increased expression:colon
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:10223192 PMID:17404573 PMID:19147571 RGD:2293078 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Becn1 beclin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20876807 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Colonic Neoplasms ClinVar PMID:12068308 PMID:12198537 PMID:12447372 PMID:12460918 PMID:12460919 More... NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Brd4 bromodomain containing 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26752646 NCBI chrNW_004955495:7,959,033...7,989,216
Ensembl chrNW_004955495:7,957,510...7,988,498
JBrowse link
G Ca4 carbonic anhydrase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955451:1,485,939...1,493,249
Ensembl chrNW_004955451:1,486,010...1,494,084
JBrowse link
G Cacna2d1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955410:3,544,398...3,963,582
Ensembl chrNW_004955410:3,619,740...3,964,239
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:7053379 RGD:10755426 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
JBrowse link
G Casp3 caspase 3 treatment ISO RGD PMID:18366456 RGD:13209144 NCBI chrNW_004955403:24,315,712...24,326,271 JBrowse link
G Cbr1 carbonyl reductase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21056497 NCBI chrNW_004955407:35,351,601...35,354,510 JBrowse link
G Ccl20 C-C motif chemokine ligand 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955453:6,846,625...6,850,007
Ensembl chrNW_004955453:6,846,549...6,850,031
JBrowse link
G Ccnd1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18283038 PMID:19147571 PMID:21081470 PMID:21188121 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Ccnd2 cyclin D2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Ccne1 cyclin E1 ISO mRNA, protein:increased expression:colon RGD PMID:14614307 RGD:2289293 NCBI chrNW_004955468:7,803,610...7,814,872
Ensembl chrNW_004955468:7,803,346...7,814,872
JBrowse link
G Ccnh cyclin H ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955418:23,790,398...23,807,509
Ensembl chrNW_004955418:23,790,001...23,807,702
JBrowse link
G Cd40lg CD40 ligand ISO RGD PMID:20378141 RGD:5490978 NCBI chrNW_004955489:8,465,571...8,477,714
Ensembl chrNW_004955489:8,465,164...8,477,746
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:20876807 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
JBrowse link
G Cdx2 caudal type homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29439001 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:16794575 PMID:21244692 PMID:22419737 PMID:25741868 PMID:26467025 More... NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Ckm creatine kinase, M-type ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955555:2,318,072...2,330,733
Ensembl chrNW_004955555:2,318,072...2,336,811
JBrowse link
G Col18a1 collagen type XVIII alpha 1 chain severity ISO RGD PMID:16437622 RGD:1600901 NCBI chrNW_004955407:42,091,211...42,131,343
Ensembl chrNW_004955407:42,091,211...42,131,343
JBrowse link
G Cp ceruloplasmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:23792645 NCBI chrNW_004955448:470,063...522,909
Ensembl chrNW_004955448:473,179...523,100
JBrowse link
G Cryab crystallin alpha B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955412:13,626,018...13,629,495
Ensembl chrNW_004955412:13,625,363...13,640,426
JBrowse link
G Ctnnb1 catenin beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:9515794 PMID:12628520 PMID:12800193 PMID:14507667 PMID:15459021 More... NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:23807571 PMID:25614872 PMID:25741868 PMID:28492532 PMID:30482293 More... NCBI chrNW_004955412:10,533,174...10,567,364
Ensembl chrNW_004955412:10,533,441...10,567,612
JBrowse link
G Cxcl10 C-X-C motif chemokine ligand 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955433:748,392...750,890
Ensembl chrNW_004955433:748,284...750,927
JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955477:863,388...899,703 JBrowse link
G Dnmt1 DNA methyltransferase 1 treatment ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:19723570 RGD:9588972 NCBI chrNW_004955495:1,465,529...1,505,379
Ensembl chrNW_004955495:1,465,480...1,505,462
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18652704 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Egfr epidermal growth factor receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14569062 PMID:25200834 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Eif3i eukaryotic translation initiation factor 3 subunit I ISO CTD Direct Evidence: marker/mechanism CTD PMID:24056964 NCBI chrNW_004955452:10,588,929...10,595,869
Ensembl chrNW_004955452:10,588,929...10,595,869
JBrowse link
G Eomes eomesodermin ISO CTD Direct Evidence: marker/mechanism CTD PMID:27539959 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar NCBI chrNW_004955441:14,155,084...14,167,584
Ensembl chrNW_004955441:14,155,082...14,169,161
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11222871 NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:23680147 NCBI chrNW_004955458:3,683,126...3,701,752
Ensembl chrNW_004955458:3,683,126...3,702,978
JBrowse link
G F5 coagulation factor V ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:serum
CTD
RGD
PMID:25200834 RGD:10449102 NCBI chrNW_004955462:7,695,004...7,757,832
Ensembl chrNW_004955462:7,694,939...7,757,463
JBrowse link
G Fas Fas cell surface death receptor resistance ISO protein:increased expression RGD PMID:15796164 RGD:1600355 NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455
JBrowse link
G Fbp1 fructose-bisphosphatase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22039417 NCBI chrNW_004955422:21,537,337...21,569,174
Ensembl chrNW_004955422:21,536,667...21,569,433
JBrowse link
G Folr1 folate receptor alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:15705887 PMID:18926688 NCBI chrNW_004955414:19,188,830...19,197,728
Ensembl chrNW_004955414:19,187,388...19,197,728
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:21344377 RGD:13210752 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Fzd2 frizzled class receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chrNW_004955451:17,501,410...17,503,726 JBrowse link
G Gap43 growth associated protein 43 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955427:15,696,549...15,791,279
Ensembl chrNW_004955427:15,695,963...15,791,327
JBrowse link
G Gast gastrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:3952654 NCBI chrNW_004955451:15,987,160...15,988,067
Ensembl chrNW_004955451:15,987,597...15,988,131
JBrowse link
G Gcg glucagon ISO CTD Direct Evidence: marker/mechanism CTD PMID:22323126 NCBI chrNW_004955449:11,708,152...11,716,429
Ensembl chrNW_004955449:11,708,152...11,716,429
JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955411:27,096,214...27,759,503
Ensembl chrNW_004955411:27,103,470...27,801,177
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta disease_progression
treatment
ISO protein:increased expression:nucleus RGD PMID:23389968 PMID:23729362 RGD:13210765 RGD:13210769 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955471:11,367,318...11,422,199
Ensembl chrNW_004955471:11,367,282...11,424,273
JBrowse link
G Hdac2 histone deacetylase 2 ISO DNA:mutations:colon:
mRNA:increased expression:colon:
RGD PMID:16642021 PMID:23724067 RGD:9590193 RGD:9590331 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19147571 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha severity ISO RGD PMID:21812995 RGD:10395382 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 PMID:27816970 NCBI chrNW_004955435:22,804,484...22,820,807
Ensembl chrNW_004955435:22,804,484...22,821,482
JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955466:5,344,366...5,347,707
Ensembl chrNW_004955466:5,344,366...5,347,707
JBrowse link
G Hspb1 heat shock protein family B (small) member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955844:8,094...9,565
Ensembl chrNW_004955844:7,790...10,004
JBrowse link
G Icam1 intercellular adhesion molecule 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7902311 PMID:16497620 NCBI chrNW_004955495:1,561,464...1,573,282
Ensembl chrNW_004955495:1,561,714...1,574,755
JBrowse link
G Id3 inhibitor of DNA binding 3, HLH protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955452:3,537,352...3,538,921
Ensembl chrNW_004955452:3,537,021...3,560,954
JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: therapeutic CTD PMID:10866311 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G Igf2 insulin like growth factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15057734 NCBI chrNW_004955422:13,880,525...13,907,963
Ensembl chrNW_004955422:13,880,471...13,888,566
JBrowse link
G Igfbp1 insulin like growth factor binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955456:6,810,461...6,814,944
Ensembl chrNW_004955456:6,810,056...6,815,685
JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 PMID:18987561 PMID:19028472 NCBI chrNW_004955470:1,486,936...1,491,888
Ensembl chrNW_004955470:1,486,967...1,491,947
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO CTD Direct Evidence: marker/mechanism CTD PMID:18987561 NCBI chrNW_004955470:1,145,022...1,159,413
Ensembl chrNW_004955470:1,144,810...1,159,471
JBrowse link
G Itga7 integrin subunit alpha 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955458:3,322,735...3,343,275
Ensembl chrNW_004955458:3,321,259...3,343,275
JBrowse link
G Itih4 inter-alpha-trypsin inhibitor heavy chain 4 ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:serum
CTD
RGD
PMID:25200834 RGD:10449102 NCBI chrNW_004955430:2,772,064...2,787,912
Ensembl chrNW_004955430:2,770,373...2,789,131
JBrowse link
G Jak3 Janus kinase 3 treatment ISO RGD PMID:23514809 RGD:11533940 NCBI chrNW_004955524:3,399,895...3,412,018
Ensembl chrNW_004955524:3,401,642...3,411,643
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:12628520 PMID:18283038 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Kcnh2 potassium voltage-gated channel subfamily H member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16086867 NCBI chrNW_004955491:5,391,444...5,422,241
Ensembl chrNW_004955491:5,391,384...5,422,241
JBrowse link
G Kdm1a lysine demethylase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:25043185 NCBI chrNW_004955452:3,044,042...3,104,650
Ensembl chrNW_004955452:3,044,264...3,104,418
JBrowse link
G Kdm5b lysine demethylase 5B ISO CTD Direct Evidence: marker/mechanism CTD PMID:25043185 NCBI chrNW_004955406:38,755,220...38,823,094
Ensembl chrNW_004955406:38,755,220...38,823,088
JBrowse link
G Kdr kinase insert domain receptor ISO associated with Colitis;mRNA, protein:increased expression:colon RGD PMID:21098094 RGD:5684533 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism CTD PMID:10813127 PMID:12800193 PMID:12839936 PMID:17192441 PMID:18372904 More... NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chrNW_004955496:1,728,840...1,827,749
Ensembl chrNW_004955496:1,728,840...1,828,698
JBrowse link
G Lep leptin ISO CTD Direct Evidence: marker/mechanism CTD PMID:17354198 NCBI chrNW_004955479:9,266,604...9,276,568
Ensembl chrNW_004955479:9,274,516...9,279,472
JBrowse link
G Lgr5 leucine rich repeat containing G protein-coupled receptor 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chrNW_004955405:11,507,083...11,574,504
Ensembl chrNW_004955405:11,507,083...11,574,569
JBrowse link
G LOC102021956 alpha-2-macroglobulin ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955413:6,019,457...6,062,366
Ensembl chrNW_004955413:6,019,082...6,062,529
JBrowse link
G Lpl lipoprotein lipase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955403:43,646,084...43,672,116
Ensembl chrNW_004955403:43,646,084...43,673,967
JBrowse link
G Lrg1 leucine rich alpha-2-glycoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25200834 NCBI chrNW_004955495:4,402,670...4,405,666
Ensembl chrNW_004955495:4,402,746...4,406,943
JBrowse link
G Ltf lactotransferrin ISO CTD Direct Evidence: therapeutic CTD PMID:12079509 NCBI chrNW_004955420:25,580,449...25,604,277
Ensembl chrNW_004955420:25,580,359...25,604,331
JBrowse link
G Macir macrophage immunometabolism regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955418:10,752,250...10,767,791
Ensembl chrNW_004955418:10,752,250...10,767,791
JBrowse link
G Maob monoamine oxidase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955516:4,328,286...4,473,419
Ensembl chrNW_004955516:4,328,476...4,472,593
JBrowse link
G Map2k6 mitogen-activated protein kinase kinase 6 ISO CTD Direct Evidence: therapeutic CTD PMID:15037631 NCBI chrNW_004955478:3,331,607...3,448,840
Ensembl chrNW_004955478:3,331,607...3,448,842
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 treatment ISO RGD PMID:17591974 PMID:18460448 RGD:13217412 RGD:13217414 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO CTD Direct Evidence: therapeutic CTD PMID:23770000 NCBI chrNW_004955429:16,012,345...16,027,151
Ensembl chrNW_004955429:16,012,173...16,027,277
JBrowse link
G Mecom MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:23770046 NCBI chrNW_004955448:18,259,847...18,542,085
Ensembl chrNW_004955448:18,259,083...18,439,646
JBrowse link
G Men1 menin 1 severity ISO RGD PMID:15054094 RGD:1304318 NCBI chrNW_004955422:20,356,491...20,363,374
Ensembl chrNW_004955422:20,356,491...20,363,575
JBrowse link
G Mep1a meprin A subunit alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955437:11,602,113...11,636,144 JBrowse link
G Mki67 marker of proliferation Ki-67 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:19028472 PMID:22070864 RGD:6483523 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Colonic Neoplasms | ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:7728749 PMID:8574961 PMID:8797773 PMID:9490293 PMID:11524701 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mmp12 matrix metallopeptidase 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955412:6,045,146...6,057,112
Ensembl chrNW_004955412:6,045,100...6,057,262
JBrowse link
G Mmp7 matrix metallopeptidase 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955412:5,780,772...5,792,485
Ensembl chrNW_004955412:5,778,502...5,792,445
JBrowse link
G Mmp9 matrix metallopeptidase 9 disease_progression ISO mRNA:increased expression:colon
protein:increased expression, increased activity:large intestine mucosa
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:15725655 PMID:20428773 PMID:21268133 RGD:2325778 RGD:5135051 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Mthfr methylenetetrahydrofolate reductase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16284371 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:16890597 PMID:19394335 PMID:19732775 PMID:20618354 PMID:20628285 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor treatment ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:12189186 PMID:15059925 PMID:18283038 PMID:21081470 PMID:22641368 RGD:7240527 NCBI chrNW_004955461:2,714,022...2,718,872
Ensembl chrNW_004955461:2,714,022...2,718,982
JBrowse link
G Ndrg2 NDRG family member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955550:1,771,514...1,778,693
Ensembl chrNW_004955550:1,767,911...1,780,635
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19028472 PMID:20715105 NCBI chrNW_004955496:5,842,734...5,950,995
Ensembl chrNW_004955496:5,842,600...5,927,885
JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 ISO DNA:insertion:Cds: 3020_3021insC (human) RGD PMID:20223031 RGD:5131515 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710
JBrowse link
G Nos2 nitric oxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16105666 PMID:21081470 NCBI chrNW_004955481:5,197,957...5,232,406
Ensembl chrNW_004955481:5,201,234...5,231,961
JBrowse link
G Notch1 notch receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19147571 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Nox1 NADPH oxidase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20715105 NCBI chrNW_004955503:6,973,965...7,020,182
Ensembl chrNW_004955503:6,974,239...6,997,618
JBrowse link
G Nox4 NADPH oxidase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:20715105 NCBI chrNW_004955414:4,062,337...4,220,032
Ensembl chrNW_004955414:4,062,081...4,212,746
JBrowse link
G Odc1 ornithine decarboxylase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12810952 NCBI chrNW_004955487:5,603,722...5,608,386
Ensembl chrNW_004955487:5,603,722...5,608,386
JBrowse link
G Parp4 poly(ADP-ribose) polymerase family member 4 exacerbates ISO CTD Direct Evidence: marker/mechanism CTD
RGD
PMID:16204055 RGD:152977751 NCBI chrNW_004955425:20,957,032...21,047,971 JBrowse link
G Pcna proliferating cell nuclear antigen ISO CTD Direct Evidence: marker/mechanism CTD PMID:19028472 PMID:19723570 NCBI chrNW_004955415:15,744,601...15,748,910
Ensembl chrNW_004955415:15,744,601...15,749,673
JBrowse link
G Pcp4 Purkinje cell protein 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955407:39,853,029...39,908,151
Ensembl chrNW_004955407:39,853,034...39,908,151
JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO RGD PMID:19208793 RGD:9589070 NCBI chrNW_004955542:49,290...57,747
Ensembl chrNW_004955542:49,259...58,823
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO RGD PMID:17050049 RGD:2292176 NCBI chrNW_004955415:4,365,848...4,403,317
Ensembl chrNW_004955415:4,365,743...4,403,587
JBrowse link
G Pecam1 platelet and endothelial cell adhesion molecule 1 ISO RGD PMID:22832932 RGD:6771355 NCBI chrNW_004955478:7,448,584...7,531,860
Ensembl chrNW_004955478:7,478,492...7,531,188
JBrowse link
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 ISO RGD PMID:22733740 RGD:13432042 NCBI chrNW_004955524:3,234,111...3,241,445
Ensembl chrNW_004955524:3,234,111...3,241,173
JBrowse link
G Plau plasminogen activator, urokinase treatment ISO protein:increased expression:colon, mucosa (human)
human tumor cell line in mouse model
RGD PMID:3884145 PMID:19214512 RGD:7241262 RGD:7241805 NCBI chrNW_004955437:17,995,726...18,000,542
Ensembl chrNW_004955437:17,994,537...18,000,209
JBrowse link
G Plcb1 phospholipase C beta 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955415:18,210,608...18,915,099
Ensembl chrNW_004955415:18,210,662...18,915,158
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:10763829 RGD:1599141 NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Polb DNA polymerase beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:25030372 NCBI chrNW_004955536:542,179...595,198
Ensembl chrNW_004955536:540,836...595,198
JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO CTD Direct Evidence: therapeutic CTD PMID:20540935 NCBI chrNW_004955429:14,814,690...14,936,869
Ensembl chrNW_004955429:14,873,908...14,937,387
JBrowse link
G Prf1 perforin 1 ISO associated with Colitis RGD PMID:19785028 RGD:6482812 NCBI chrNW_004955437:20,700,912...20,705,076
Ensembl chrNW_004955437:20,700,718...20,706,929
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19946270 NCBI chrNW_004955439:18,664,230...19,953,358
Ensembl chrNW_004955439:18,664,379...19,951,152
JBrowse link
G Prom1 prominin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21188121 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589
JBrowse link
G Ptger3 prostaglandin E receptor 3 severity ISO RGD PMID:15247185 RGD:9850265 NCBI chrNW_004955423:21,096,926...21,164,435 JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:12189188 PMID:17667525 PMID:21081470 PMID:21268133 RGD:5135051 NCBI chrNW_004955406:25,077,988...25,086,259
Ensembl chrNW_004955406:25,079,945...25,086,171
JBrowse link
G Ptp4a3 protein tyrosine phosphatase 4A3 ISO CTD Direct Evidence: therapeutic CTD PMID:23555575 NCBI chrNW_004955454:429,051...440,328
Ensembl chrNW_004955454:429,792...441,268
JBrowse link
G Rcor1 REST corepressor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25043185 NCBI chrNW_004955538:1,774,910...1,880,550
Ensembl chrNW_004955538:1,774,910...1,880,545
JBrowse link
G Reck reversion inducing cysteine rich protein with kazal motifs ISO CTD Direct Evidence: marker/mechanism CTD PMID:17443689 NCBI chrNW_004955472:222,261...276,869
Ensembl chrNW_004955472:223,683...287,089
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:20715105 NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
JBrowse link
G Rfc1 replication factor C subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18926688 NCBI chrNW_004955443:7,969,117...8,051,734
Ensembl chrNW_004955443:7,983,840...8,051,089
JBrowse link
G Rhoj ras homolog family member J ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955466:6,476,822...6,564,890
Ensembl chrNW_004955466:6,476,822...6,564,988
JBrowse link
G Rnf34 ring finger protein 34 ISO CTD Direct Evidence: therapeutic CTD PMID:16270526 NCBI chrNW_004955482:6,889,112...6,905,139
Ensembl chrNW_004955482:6,891,546...6,905,139
JBrowse link
G Runx3 RUNX family transcription factor 3 ISO DNA:promoter:hypermethylation RGD PMID:15386381 RGD:2302551 NCBI chrNW_004955452:4,580,444...4,606,820
Ensembl chrNW_004955452:4,579,331...4,636,884
JBrowse link
G S100a4 S100 calcium binding protein A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21685359 NCBI chrNW_004955545:192,236...194,468
Ensembl chrNW_004955545:192,116...195,394
JBrowse link
G S100a9 S100 calcium binding protein A9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955592:90,647...93,842 JBrowse link
G Serpinb5 serpin family B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955402:47,248,665...47,276,017
Ensembl chrNW_004955402:47,248,932...47,276,834
JBrowse link
G Sertad1 SERTA domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18097604 NCBI chrNW_004955578:848,920...852,193
Ensembl chrNW_004955578:848,486...852,557
JBrowse link
G Sh3kbp1 SH3 domain containing kinase binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955509:6,157...344,930
Ensembl chrNW_004955509:4,960...345,012
JBrowse link
G Slc16a1 solute carrier family 16 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11953883 NCBI chrNW_004955435:16,334,382...16,361,737
Ensembl chrNW_004955435:16,334,793...16,342,552
JBrowse link
G Slc19a1 solute carrier family 19 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15705887 NCBI chrNW_004955407:42,132,216...42,154,252
Ensembl chrNW_004955407:42,132,165...42,141,992
JBrowse link
G Slc2a1 solute carrier family 2 member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11953883 NCBI chrNW_004955537:2,408,042...2,438,788
Ensembl chrNW_004955537:2,408,042...2,439,511
JBrowse link
G Slc5a8 solute carrier family 5 member 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15090606 PMID:16670197 NCBI chrNW_004955405:36,717,579...36,769,074
Ensembl chrNW_004955405:36,725,892...36,769,074
JBrowse link
G Sod2 superoxide dismutase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25279216 NCBI chrNW_004955439:21,209,101...21,223,538
Ensembl chrNW_004955439:21,209,101...21,224,163
JBrowse link
G Sparc secreted protein acidic and cysteine rich ISO CTD Direct Evidence: marker/mechanism CTD PMID:17397030 NCBI chrNW_004955408:6,100,123...6,122,460
Ensembl chrNW_004955408:6,099,003...6,122,459
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:14569062 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19028472 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Tagln transgelin ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955412:18,523,469...18,529,285
Ensembl chrNW_004955412:18,523,469...18,529,285
JBrowse link
G Tcf19 transcription factor 19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15059925 NCBI chrNW_004955583:989,388...994,180
Ensembl chrNW_004955583:989,388...994,908
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21383188 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:7761852 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:12842827 PMID:19028472 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
G Tnfrsf9 TNF receptor superfamily member 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25279216 NCBI chrNW_004955486:4,986,245...5,009,437
Ensembl chrNW_004955486:4,989,582...5,010,213
JBrowse link
G Tnfsf10 TNF superfamily member 10 ISO CTD Direct Evidence: therapeutic CTD PMID:15993848 NCBI chrNW_004955420:2,550,392...2,566,448
Ensembl chrNW_004955420:2,549,142...2,566,564
JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Colonic neoplasm ClinVar PMID:12826609 PMID:20978130 PMID:24549055 PMID:25741868 PMID:28492532 More... NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278
JBrowse link
G Tpm3 tropomyosin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:19369484 NCBI chrNW_004955545:715,860...746,580
Ensembl chrNW_004955545:715,280...746,575
JBrowse link
G Trmt11 tRNA methyltransferase 11 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:30705370 NCBI chrNW_004955436:7,274,848...7,318,762
Ensembl chrNW_004955436:7,274,745...7,320,997
JBrowse link
G Tymp thymidine phosphorylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18652704 NCBI chrNW_004955413:33,505,424...33,509,095
Ensembl chrNW_004955413:33,505,446...33,508,748
JBrowse link
G Tyms thymidylate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:15355913 PMID:16284371 PMID:16609021 PMID:18192902 PMID:18652704 More... NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Uhrf1 ubiquitin like with PHD and ring finger domains 1 treatment ISO RGD PMID:20442318 RGD:9587430 NCBI chrNW_004955495:4,153,898...4,154,611 JBrowse link
G Umps uridine monophosphate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18652704 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
JBrowse link
G Usp39 ubiquitin specific peptidase 39 ISO CTD Direct Evidence: marker/mechanism CTD PMID:34822033 NCBI chrNW_004955424:1,867,910...1,893,338
Ensembl chrNW_004955424:1,867,850...1,894,157
JBrowse link
G Vegfa vascular endothelial growth factor A ISO associated with Colitis
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:18987561 PMID:21098094 RGD:5684533 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Wt1 WT1 transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961577 NCBI chrNW_004955476:10,464,688...10,504,473
Ensembl chrNW_004955476:10,464,616...10,504,473
JBrowse link
G Xaf1 XIAP associated factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15843754 PMID:17087954 NCBI chrNW_004955467:12,240,075...12,257,595 JBrowse link
G Ybx1 Y-box binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28077578 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
colorectal adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1 ATP binding cassette subfamily B member 1 susceptibility ISO DNA:polymorphism: :3435C>T (human) RGD PMID:16107775 RGD:2312343 NCBI chrNW_004955432:4,911,774...5,085,349 JBrowse link
G Arpc2 actin related protein 2/3 complex subunit 2 ISO mRNA:decreased expression:colonic mucosa (human) RGD PMID:25107436 RGD:11049173 NCBI chrNW_004955453:15,117,978...15,145,895
Ensembl chrNW_004955453:15,116,093...15,146,041
JBrowse link
G Bcl2l1 BCL2 like 1 ISO protein:increased expression:colonic mucosa (human) RGD PMID:8625322 RGD:11353854 NCBI chrNW_004955422:29,254,440...29,307,104
Ensembl chrNW_004955422:29,254,216...29,308,174
JBrowse link
G Birc7 baculoviral IAP repeat containing 7 ISO RGD PMID:21122381 RGD:13217408 NCBI chrNW_004955528:919,246...922,581
Ensembl chrNW_004955528:919,246...922,619
JBrowse link
G Borcs5 BLOC-1 related complex subunit 5 susceptibility ISO DNA:SNP:3'utr: (rs3803098) A>G (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955413:9,309,766...9,399,378
Ensembl chrNW_004955413:9,309,861...9,399,378
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase disease_progression ISO RGD PMID:24500602 RGD:11567230 NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Brd8 bromodomain containing 8 disease_progression ISO RGD PMID:19787264 RGD:9587763 NCBI chrNW_004955418:2,232,853...2,275,812
Ensembl chrNW_004955418:2,232,842...2,275,875
JBrowse link
G Ca12 carbonic anhydrase 12 severity ISO RGD PMID:10666387 RGD:155226866 NCBI chrNW_004955450:11,927,730...11,975,553
Ensembl chrNW_004955450:11,943,340...11,975,928
JBrowse link
G Ccdc17 coiled-coil domain containing 17 susceptibility ISO DNA:SNP:3'utr: (rs2275085) T>C (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955464:12,661,440...12,667,388
Ensembl chrNW_004955464:12,662,596...12,665,957
JBrowse link
G Cd44 CD44 molecule (IN blood group) disease_progression ISO mRNA, protein:splice variant, increased expression:large intestine RGD PMID:16425351 RGD:2289356 NCBI chrNW_004955422:11,106,061...11,189,951 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta susceptibility ISO DNA:SNP: : 39179G>T(human) RGD PMID:19626461 RGD:9589082 NCBI chrNW_004955422:28,380,595...28,427,012
Ensembl chrNW_004955422:28,380,591...28,421,301
JBrowse link
G Dok3 docking protein 3 susceptibility ISO DNA:SNP:3'utr: (rs2279398) (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955408:29,740,606...29,747,986
Ensembl chrNW_004955408:29,740,449...29,747,986
JBrowse link
G Emx2 empty spiracles homeobox 2 exacerbates ISO mRNA:decreased expression:colorectal mucosa (human) RGD PMID:28830374 RGD:153323301 NCBI chrNW_004955431:22,192,446...22,199,141
Ensembl chrNW_004955431:22,192,446...22,199,279
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 severity ISO RGD PMID:16507107 RGD:126781766 NCBI chrNW_004955458:3,683,126...3,701,752
Ensembl chrNW_004955458:3,683,126...3,702,978
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO mRNA:decreased expression:colorectum (human) RGD PMID:22966016 RGD:155598682 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit disease_progression ISO DNA:SNP: rs3757441 (human) RGD PMID:21926398 RGD:126779594 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G Fam151a family with sequence similarity 151 member A susceptibility ISO DNA:SNP:3'utr: (rs11206394) G>C (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955464:4,730,627...4,741,479
Ensembl chrNW_004955464:4,730,552...4,741,391
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 treatment ISO human cell line in a mouse model RGD PMID:31255687 RGD:155663557 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Flt3 fms related receptor tyrosine kinase 3 severity ISO DNA:polymorphisms:multiple RGD PMID:33075166 RGD:149735513 NCBI chrNW_004955497:7,357,533...7,441,215
Ensembl chrNW_004955497:7,357,212...7,461,439
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:8264230 RGD:13210753 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Gjb3 gap junction protein beta 3 susceptibility ISO DNA:SNP:3'utr: (rs9118) C>G (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955452:12,892,687...12,896,290
Ensembl chrNW_004955452:12,892,687...12,896,290
JBrowse link
G Gpx4 glutathione peroxidase 4 susceptibility ISO DNA:SNP:3' utr:c.718T>C (human) RGD PMID:18850177 RGD:152998895 NCBI chrNW_004955495:6,767,969...6,772,256
Ensembl chrNW_004955495:6,767,975...6,772,178
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:21609933 RGD:13210767 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137
JBrowse link
G Hpca hippocalcin severity ISO mRNA, protein:increased expression:colon carcinoma (human) RGD PMID:22696308 RGD:9693683 NCBI chrNW_004955452:11,142,282...11,150,798
Ensembl chrNW_004955452:11,140,373...11,154,261
JBrowse link
G Ier2 immediate early response 2 disease_progression ISO protein:increased expression:colon (human) RGD PMID:22120713 RGD:153323322 NCBI chrNW_004955415:32,159,762...32,161,530
Ensembl chrNW_004955415:32,159,935...32,160,624
JBrowse link
G Il16 interleukin 16 susceptibility ISO DNA:SNP:3'utr: (rs1131445) T>C (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955416:11,876,317...11,987,548 JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:8264230 RGD:13210753 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO protein:increased expression:colorectal mucosa (human) RGD PMID:10874008 RGD:151347670 NCBI chrNW_004955415:31,876,508...31,878,289
Ensembl chrNW_004955415:31,876,793...31,877,836
JBrowse link
G Kcnh1 potassium voltage-gated channel subfamily H member 1 severity ISO DNA:amplification: (human) RGD PMID:17289873 RGD:9693694 NCBI chrNW_004955489:1,176,615...1,549,880
Ensembl chrNW_004955489:1,179,053...1,545,355
JBrowse link
G Kdr kinase insert domain receptor severity
treatment
ISO protein:altered phosphorylation:colon RGD PMID:25372416 PMID:26325365 RGD:11529678 RGD:126848811 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO human gene in a mouse model RGD PMID:22713656 RGD:9588601 NCBI chrNW_004955468:2,813,183...2,834,326
Ensembl chrNW_004955468:2,813,496...2,834,326
JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial susceptibility ISO DNA:SNPs:enhancers: (rs6013897, rs158552, rs17217119) (human) RGD PMID:28009432 RGD:151665179 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 treatment ISO RGD PMID:25405740 RGD:13210782 NCBI chrNW_004955442:17,284,232...17,380,026
Ensembl chrNW_004955442:17,284,232...17,380,020
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 treatment ISO RGD PMID:25405740 RGD:13210782 NCBI chrNW_004955493:6,870,699...6,876,836
Ensembl chrNW_004955493:6,869,668...6,879,152
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO RGD PMID:21122381 RGD:13217408 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Msh2 mutS homolog 2 disease_progression ISO RGD PMID:11604476 RGD:126790556 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor exacerbates ISO RNA:decreased expression:colon (human) RGD PMID:28533893 RGD:150540307 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ISO protein:increased expression:colorectal mucosa (human) RGD PMID:19198856 RGD:153002579 NCBI chrNW_004955444:9,313,748...9,587,109
Ensembl chrNW_004955444:9,313,447...9,584,913
JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 susceptibility ISO DNA:SNP:3'utr: (rs3135499) C>A (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710
JBrowse link
G Pcsk4 proprotein convertase subtilisin/kexin type 4 susceptibility ISO DNA:SNP:3'utr: (rs1047854) C>T (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955495:6,424,426...6,460,252
Ensembl chrNW_004955495:6,453,991...6,459,744
JBrowse link
G Rab24 RAB24, member RAS oncogene family susceptibility ISO DNA:SNP:3'utr: (rs1128287) C>A (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955408:29,548,839...29,551,184
Ensembl chrNW_004955408:29,548,839...29,551,184
JBrowse link
G Rac1 Rac family small GTPase 1 disease_progression ISO mRNA, protein:increased expression:colorectum (human) RGD PMID:30926638 RGD:155230818 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO RGD PMID:21122381 RGD:13217408 NCBI chrNW_004955429:17,980,956...18,049,723
Ensembl chrNW_004955429:18,025,932...18,049,723
JBrowse link
G Rgs5 regulator of G protein signaling 5 susceptibility ISO DNA:SNP:3'utr: (rs15049) C>A (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955462:13,228,110...13,288,063
Ensembl chrNW_004955462:13,228,002...13,283,034
JBrowse link
G Rictor RPTOR independent companion of MTOR complex 2 disease_progression ISO protein:increased expression:colon (human) RGD PMID:27729429 RGD:152995521 NCBI chrNW_004955426:23,468,112...23,582,587
Ensembl chrNW_004955426:23,468,112...23,582,587
JBrowse link
G Rnaset2 ribonuclease T2 ISO human cells in mouse model RGD PMID:27014725 RGD:153002831 NCBI chrNW_004955439:15,098,210...15,122,015
Ensembl chrNW_004955439:15,098,114...15,125,413
JBrowse link
G Rsph1 radial spoke head component 1 susceptibility ISO DNA:SNP:3'utr: (rs2839531) T>C (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955407:39,266,888...39,284,972
Ensembl chrNW_004955407:39,266,888...39,284,972
JBrowse link
G Slc7a5 solute carrier family 7 member 5 disease_progression ISO RGD PMID:32359697 RGD:151361139 NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 disease_progression ISO protein:decreased expression:colon, nucleus RGD PMID:27184481 RGD:127285648 NCBI chrNW_004955455:8,420,263...8,457,105
Ensembl chrNW_004955455:8,415,839...8,457,097
JBrowse link
G Socs1 suppressor of cytokine signaling 1 no_association ISO RGD PMID:25339048 RGD:150573690 NCBI chrNW_004955442:7,321,337...7,323,109
Ensembl chrNW_004955442:7,321,337...7,323,109
JBrowse link
G Stat5b signal transducer and activator of transcription 5B disease_progression
ameliorates
ISO protein:increased expression:colorectum (human)
human cells in a mouse model
RGD PMID:21826656 PMID:23733954 RGD:11076784 RGD:153298931 NCBI chrNW_004955451:16,253,645...16,295,337 JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO mRNA:increased expression:colorectum (human) RGD PMID:11358845 RGD:155631271 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600
JBrowse link
G Tp53 tumor protein p53 ISO RGD PMID:8264230 RGD:13210753 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp73 tumor protein p73 exacerbates ISO protein:increased expression:colon (human) RGD PMID:19956069 RGD:151347585 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982
JBrowse link
G Tpst1 tyrosylprotein sulfotransferase 1 susceptibility ISO DNA:SNP:3'utr: (rs3757417) G>T (human) RGD PMID:27354594 RGD:152177496 NCBI chrNW_004955456:8,523,362...8,616,891
Ensembl chrNW_004955456:8,520,906...8,618,107
JBrowse link
G Tyms thymidylate synthetase ISO protein:increased activity:colon (rat) RGD PMID:10226549 RGD:2317418 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Utp23 UTP23 small subunit processome component susceptibility ISO DNA:missense mutation:cds:p.P215Q (rs16888728) (human) RGD PMID:26553438 RGD:11041896 NCBI chrNW_004955417:22,859,914...22,867,633 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 treatment ISO associated with Neoplasm Metastasis; DNA:missense mutation:cds: p.R399Q, c.1196G>A (human) RGD PMID:19908066 RGD:150573820 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
colorectal adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Colorectal adenoma ClinVar PMID:2472832 PMID:10811618 PMID:11257105 PMID:11823972 PMID:11904335 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Birc7 baculoviral IAP repeat containing 7 ISO RGD PMID:21122381 RGD:13217408 NCBI chrNW_004955528:919,246...922,581
Ensembl chrNW_004955528:919,246...922,619
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit disease_progression ISO protein:increased expression:large intestine RGD PMID:30214616 RGD:126779593 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G F5 coagulation factor V ISO protein:increased expression:serum RGD PMID:30971492 RGD:40907058 NCBI chrNW_004955462:7,695,004...7,757,832
Ensembl chrNW_004955462:7,694,939...7,757,463
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:8264230 RGD:13210753 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Gpx2 glutathione peroxidase 2 ISO mRNA:increased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955466:4,983,532...4,987,780
Ensembl chrNW_004955466:4,984,631...4,987,457
JBrowse link
G Gpx3 glutathione peroxidase 3 ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955408:2,622,162...2,629,088
Ensembl chrNW_004955408:2,622,741...2,629,032
JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO DNA:SNP: :p.A114V (human) RGD PMID:20375710 RGD:7495820 NCBI chrNW_004955422:17,914,228...17,916,918
Ensembl chrNW_004955422:17,914,305...17,917,428
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:8264230 RGD:13210753 NCBI chrNW_004955464:1,107,598...1,110,326 JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial severity
treatment
ISO DNA:SNPs:intron, CDS: (rs927650), (rs35051736) (human)
DNA:SNP:CDS: (rs2296241) (human)
RGD PMID:26241700 PMID:27978548 RGD:11521055 RGD:152025254 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G Map2k4 mitogen-activated protein kinase kinase 4 ISO protein:decreased expression:colorectum (human) RGD PMID:28423721 RGD:150429743 NCBI chrNW_004955467:5,188,036...5,295,570
Ensembl chrNW_004955467:5,187,356...5,307,692
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO RGD PMID:21122381 PMID:23082052 RGD:13217408 RGD:13217413 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor ameliorates ISO RGD PMID:30063920 RGD:150519915 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Ptch1 patched 1 ISO RGD PMID:24612059 RGD:150523840 NCBI chrNW_004955422:22,362,330...22,418,062
Ensembl chrNW_004955422:22,362,221...22,427,622
JBrowse link
G Ptgis prostaglandin I2 synthase susceptibility ISO DNA:repeats:promoter: RGD PMID:16537708 RGD:151347835 NCBI chrNW_004955445:8,624,228...8,663,385
Ensembl chrNW_004955445:8,623,430...8,677,658
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO RGD PMID:21122381 RGD:13217408 NCBI chrNW_004955429:17,980,956...18,049,723
Ensembl chrNW_004955429:18,025,932...18,049,723
JBrowse link
G Selenop selenoprotein P ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955426:26,951,003...26,961,839 JBrowse link
G Selenos selenoprotein S ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955416:28,152,984...28,162,173
Ensembl chrNW_004955416:28,153,460...28,162,095
JBrowse link
G Sephs2 selenophosphate synthetase 2 ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955493:7,370,869...7,373,121
Ensembl chrNW_004955493:7,371,617...7,372,945
JBrowse link
G Smad4 SMAD family member 4 ISO mRNA:increased expression:mucosa RGD PMID:11480790 RGD:21066339 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 ameliorates ISO protein:increased expression:colorectal mucosa (human) RGD PMID:19156145 RGD:151347861 NCBI chrNW_004955420:24,594,057...24,729,108
Ensembl chrNW_004955420:24,593,830...24,729,108
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A ISO protein:increased expression:serum, colorectal mucosa, epithelial cell RGD PMID:23082052 RGD:13217413 NCBI chrNW_004955413:3,982,670...3,996,320
Ensembl chrNW_004955413:3,981,400...3,996,021
JBrowse link
G Ttr transthyretin ISO protein:decreased expression:blood serum (human)
protein:decreased expression:colorectum (human)
RGD PMID:21136704 PMID:33739034 RGD:151660505 RGD:151664608 NCBI chrNW_004955402:18,921,235...18,927,976
Ensembl chrNW_004955402:18,921,274...18,928,108
JBrowse link
G Txnrd3 thioredoxin reductase 3 ISO mRNA:increased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955429:16,845,466...16,880,481
Ensembl chrNW_004955429:16,845,526...16,879,797
JBrowse link
colorectal cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aagab alpha and gamma adaptin binding protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:8,694,829...8,742,816
Ensembl chrNW_004955450:8,694,892...8,741,701
JBrowse link
G Abhd17c abhydrolase domain containing 17C, depalmitoylase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,495,651...11,543,276
Ensembl chrNW_004955416:11,495,651...11,543,405
JBrowse link
G Abhd2 abhydrolase domain containing 2, acylglycerol lipase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,878,972...15,983,322
Ensembl chrNW_004955416:15,884,624...15,983,322
JBrowse link
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ameliorates
disease_progression
ISO human gene in mouse model
mRNA, protein:increased expression:colorectum (human)
RGD PMID:32850446 RGD:126908002 NCBI chrNW_004955513:652,048...799,182
Ensembl chrNW_004955513:653,252...799,239
JBrowse link
G Acan aggrecan ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,125,536...16,186,046 JBrowse link
G Acsbg1 acyl-CoA synthetase bubblegum family member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:703,874...744,782
Ensembl chrNW_004955450:701,517...745,126
JBrowse link
G Actc1 actin alpha cardiac muscle 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:2,139,541...2,144,678
Ensembl chrNW_004955416:2,137,101...2,145,416
JBrowse link
G Ada adenosine deaminase disease_progression ISO RGD PMID:11114712 RGD:152995282 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Adal adenosine deaminase like ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,892,422...9,913,877
Ensembl chrNW_004955416:9,898,339...9,913,427
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 severity ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar
RGD
PMID:28492532 PMID:31565100 RGD:153298908 NCBI chrNW_004955450:15,853,372...15,927,966
Ensembl chrNW_004955450:15,853,366...15,928,200
JBrowse link
G Adam28 ADAM metallopeptidase domain 28 severity ISO mRNA,protein:decreased expression:colorectum RGD PMID:27661126 PMID:31565100 RGD:153298906 RGD:153298908 NCBI chrNW_004955403:47,304,711...47,409,369
Ensembl chrNW_004955403:47,319,382...47,409,380
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif 7 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:525,313...581,006
Ensembl chrNW_004955450:529,999...577,621
JBrowse link
G Adamtsl3 ADAMTS like 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:12,818,153...13,132,960
Ensembl chrNW_004955416:12,820,138...13,131,826
JBrowse link
G Adar adenosine deaminase RNA specific ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938
JBrowse link
G Adgrb1 adhesion G protein-coupled receptor B1 ISO mRNA:decreased expression:colorectum RGD PMID:9772287 RGD:13831353 NCBI chrNW_004955454:1,250,261...1,313,547
Ensembl chrNW_004955454:1,237,363...1,314,127
JBrowse link
G Adm adrenomedullin ISO mRNA,protein:increased expression:colorectum (human) RGD PMID:21839130 RGD:152985531 NCBI chrNW_004955414:25,951,473...25,953,593
Ensembl chrNW_004955414:25,951,349...25,953,645
JBrowse link
G Adpgk ADP dependent glucokinase ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:4,593,295...4,625,091
Ensembl chrNW_004955450:4,593,295...4,627,727
JBrowse link
G Aen apoptosis enhancing nuclease ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,328,655...16,338,069
Ensembl chrNW_004955416:16,331,290...16,338,078
JBrowse link
G Aff4 ALF transcription elongation factor 4 disease_progression ISO RGD PMID:35223479 RGD:155631267 NCBI chrNW_004955408:4,247,730...4,305,194
Ensembl chrNW_004955408:4,248,563...4,305,194
JBrowse link
G Afg2b AFG2 AAA ATPase homolog B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,031,094...8,049,477 JBrowse link
G Agbl1 AGBL carboxypeptidase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:17,885,757...18,686,124
Ensembl chrNW_004955416:18,130,605...18,686,108
JBrowse link
G Akap13 A-kinase anchoring protein 13 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:19,006,206...19,327,523
Ensembl chrNW_004955416:19,009,485...19,247,626
JBrowse link
G Akap9 A-kinase anchoring protein 9 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:23861362 PMID:24033266 PMID:25741868 PMID:28492532 NCBI chrNW_004955432:8,933,037...9,090,872
Ensembl chrNW_004955432:8,932,952...9,095,065
JBrowse link
G Akt1 AKT serine/threonine kinase 1 ameliorates
disease_progression
susceptibility
ISO human cells in mouse model
protein:increased serine phosphorylation:colon
DNA:point mutation:cds:p.E17K (human)
OMIM
RGD
PMID:17611497 PMID:21425139 PMID:30789971 RGD:13209139 RGD:151893289 RGD:1643334 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Akt2 AKT serine/threonine kinase 2 onset ISO protein:increased expression:colon (rat)
protein:increased expression:colon (human)
RGD PMID:11756242 RGD:2313394 NCBI chrNW_004955578:950,258...1,004,438
Ensembl chrNW_004955578:967,593...1,004,438
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Alpk3 alpha kinase 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,279,831...14,322,836
Ensembl chrNW_004955416:14,277,866...14,322,838
JBrowse link
G Alx4 ALX homeobox 4 ISO DNA:hypermethylation:serum: RGD PMID:17101318 PMID:26918234 RGD:153323327 RGD:153344524 NCBI chrNW_004955422:3,278,615...3,290,799
Ensembl chrNW_004955422:3,278,615...3,291,714
JBrowse link
G Amer1 APC membrane recruitment protein 1 exacerbates
onset
ISO protein:decreased expression:colonic mucosa (human)
ClinVar Annotator: match by term: Colorectal cancer
DNA:mutations: (human)
RGD
ClinVar
PMID:28492532 PMID:30631060 PMID:31243121 PMID:34549727 PMID:34771502 RGD:151665181 RGD:151665183 NCBI chrNW_004955475:4,451,094...4,470,750
Ensembl chrNW_004955475:4,463,023...4,466,406
JBrowse link
G Ankdd1a ankyrin repeat and death domain containing 1A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,630,303...10,651,918
Ensembl chrNW_004955450:10,630,868...10,648,940
JBrowse link
G Ankle2 ankyrin repeat and LEM domain containing 2 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:23230001 PMID:25948378 PMID:28492532 PMID:30503519 NCBI chrNW_004955482:322,251...353,918
Ensembl chrNW_004955482:333,966...359,302
JBrowse link
G Ankrd34c ankyrin repeat domain 34C ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:311,863...320,185 JBrowse link
G Ankrd63 ankyrin repeat domain 63 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,212,413...7,216,526
Ensembl chrNW_004955416:7,212,413...7,216,526
JBrowse link
G Anp32a acidic nuclear phosphoprotein 32 family member A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,449,368...7,484,524 JBrowse link
G Anpep alanyl aminopeptidase, membrane ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,415,981...15,442,032
Ensembl chrNW_004955416:15,424,932...15,444,075
JBrowse link
G Antxr1 ANTXR cell adhesion molecule 1 ISO mRNA:increased expression:blood: RGD PMID:21573768 RGD:9684945 NCBI chrNW_004955424:15,820,734...16,034,278
Ensembl chrNW_004955424:15,824,435...16,033,946
JBrowse link
G Anxa2 annexin A2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:14,545,586...14,574,161
Ensembl chrNW_004955450:14,512,381...14,574,696
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,927,655...13,956,589
Ensembl chrNW_004955416:13,927,545...13,957,207
JBrowse link
G Ap4e1 adaptor related protein complex 4 subunit epsilon 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,476,527...3,532,683 JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
OMIM
ClinVar
PMID:1316610 PMID:1324223 PMID:1338764 PMID:1651563 PMID:1944466 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Aph1b aph-1 homolog B, gamma-secretase subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:12,000,682...12,022,183
Ensembl chrNW_004955450:12,000,424...12,022,071
JBrowse link
G Apoc3 apolipoprotein C3 disease_progression ISO RGD PMID:31502404 RGD:153344612 NCBI chrNW_004955412:18,165,667...18,168,015
Ensembl chrNW_004955412:18,165,667...18,168,015
JBrowse link
G Aqp9 aquaporin 9 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:16,253,706...16,346,602
Ensembl chrNW_004955450:16,253,571...16,302,657
JBrowse link
G Aqr aquarius intron-binding spliceosomal factor ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:2,214,990...2,304,924
Ensembl chrNW_004955416:2,215,490...2,304,726
JBrowse link
G Arhgap11a Rho GTPase activating protein 11A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:1,916,475...1,936,404 JBrowse link
G Arid1a AT-rich interaction domain 1A exacerbates
disease_progression
ISO protein:decreased expression:colorectum (human)
ClinVar Annotator: match by term: Colorectal cancer
RGD
ClinVar
PMID:25561809 PMID:31263894 RGD:126777686 RGD:126779574 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Arid2 AT-rich interaction domain 2 exacerbates ISO RGD PMID:33262464 RGD:150429650 NCBI chrNW_004955500:4,998,555...5,177,180
Ensembl chrNW_004955500:4,998,555...5,175,776
JBrowse link
G Arid3b AT-rich interaction domain 3B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,272,820...3,318,820
Ensembl chrNW_004955450:3,271,387...3,319,103
JBrowse link
G Arih1 ariadne RBR E3 ubiquitin protein ligase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,683,118...4,737,793
Ensembl chrNW_004955450:4,683,118...4,737,994
JBrowse link
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,279,866...11,429,365
Ensembl chrNW_004955416:11,308,846...11,429,365
JBrowse link
G Arpp19 cAMP regulated phosphoprotein 19 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,354,988...2,369,846
Ensembl chrNW_004955409:2,354,988...2,369,846
JBrowse link
G Asap3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 disease_progression ISO mRNA, protein:increased expression:colon (human) RGD PMID:28502111 RGD:153305906 NCBI chrNW_004955452:3,437,240...3,480,472
Ensembl chrNW_004955452:3,438,495...3,480,539
JBrowse link
G Atf7 activating transcription factor 7 disease_progression ISO RGD PMID:26148593 RGD:11055686 NCBI chrNW_004955458:803,738...898,847
Ensembl chrNW_004955458:803,738...898,967
JBrowse link
G Atm ATM serine/threonine kinase disease_progression ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
DNA:mutations
RGD
ClinVar
PMID:100011 PMID:9443866 PMID:9887333 PMID:10330348 PMID:10817650 More... RGD:126790575 RGD:150340714 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Atosa atos homolog A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,261,169...2,345,489
Ensembl chrNW_004955409:2,289,589...2,344,832
JBrowse link
G Atp8b4 ATPase phospholipid transporting 8B4 (putative) ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,148,110...4,383,309
Ensembl chrNW_004955409:4,183,493...4,381,356
JBrowse link
G Aurka aurora kinase A susceptibility ISO OMIM NCBI chrNW_004955445:2,831,073...2,853,151
Ensembl chrNW_004955445:2,831,157...2,853,357
JBrowse link
G Aven apoptosis and caspase activation inhibitor ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:690,440...712,391 JBrowse link
G Axin2 axin 2 disease_progression
treatment
ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
DNA:SNP::rs2240308, c.148G>A(human)
OMIM
ClinVar
RGD
PMID:9536098 PMID:11017067 PMID:12101426 PMID:15042511 PMID:15735151 More... RGD:151356510 RGD:151356662 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Azgp1 alpha-2-glycoprotein 1, zinc-binding disease_progression ISO mRNA,protein:decreased expression:colorectum:
protein:increased expression:serum
RGD PMID:23393224 PMID:29755407 PMID:32525817 RGD:153350127 RGD:153350137 RGD:153350147 NCBI chrNW_004955573:902,153...910,481
Ensembl chrNW_004955573:899,798...912,272
JBrowse link
G B2m beta-2-microglobulin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,205,503...11,211,325
Ensembl chrNW_004955416:11,204,849...11,215,568
JBrowse link
G Bahd1 bromo adjacent homology domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,376,794...7,388,577
Ensembl chrNW_004955416:7,361,847...7,388,647
JBrowse link
G Bambi BMP and activin membrane bound inhibitor disease_progression ISO RGD PMID:18756595 PMID:29085481 RGD:14390154 RGD:14390156 NCBI chrNW_004955429:21,024,396...21,025,890
Ensembl chrNW_004955429:21,024,374...21,025,890
JBrowse link
G Barhl2 BarH like homeobox 2 severity ISO RGD PMID:27453340 RGD:14392684 NCBI chrNW_004955423:3,516,973...3,522,459
Ensembl chrNW_004955423:3,516,660...3,522,536
JBrowse link
G Bax BCL2 associated X, apoptosis regulator ISO OMIM NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719
JBrowse link
G Bcl2a1 BCL2 related protein A1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:773,912...785,040
Ensembl chrNW_004955533:773,912...785,037
JBrowse link
G Bcor BCL6 corepressor treatment ISO RGD PMID:27880939 RGD:150340704 NCBI chrNW_004955566:1,412,540...1,510,339
Ensembl chrNW_004955566:1,412,540...1,457,329
JBrowse link
G Birc2 baculoviral IAP repeat containing 2 exacerbates ISO mRNA:decreased expression:colonic mucosa (human) RGD PMID:27827395 RGD:153344527 NCBI chrNW_004955412:5,658,322...5,685,628
Ensembl chrNW_004955412:5,659,478...5,685,114
JBrowse link
G Birc3 baculoviral IAP repeat containing 3 exacerbates ISO protein:increased expression:colorectal mucosa, cytoplasm (human)
mRNA:decreased expression:colonic mucosa (human)
mRNA:increased expression:colorectum (human)
RGD PMID:27827395 PMID:30653121 PMID:34389694 RGD:152999015 RGD:153305952 RGD:153344527 NCBI chrNW_004955412:5,624,865...5,643,520
Ensembl chrNW_004955412:5,628,973...5,643,410
JBrowse link
G Blm BLM RecQ like helicase ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,814,753...14,899,865
Ensembl chrNW_004955416:14,842,033...14,899,687
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:7,902,125...7,913,966
Ensembl chrNW_004955409:7,899,601...7,913,966
JBrowse link
G Bmf Bcl2 modifying factor ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,048,654...7,068,917
Ensembl chrNW_004955416:7,052,290...7,068,910
JBrowse link
G Bnc1 basonuclin zinc finger protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,428,760...13,440,837
Ensembl chrNW_004955416:13,428,760...13,440,921
JBrowse link
G Bnip2 BCL2 interacting protein 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,157,411...15,180,069
Ensembl chrNW_004955450:15,157,226...15,180,069
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
OMIM
ClinVar
PMID:2500657 PMID:12068308 PMID:12198537 PMID:12447372 PMID:12460918 More... NCBI chrNW_004955494:2,567,238...2,712,708 JBrowse link
G Brca1 BRCA1 DNA repair associated disease_progression
onset
ISO ClinVar Annotator: match by term: Colorectal cancer RGD
ClinVar
PMID:16533773 PMID:20862552 PMID:28492532 PMID:30209399 PMID:30257991 RGD:126790575 RGD:126925961 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brca2 BRCA2 DNA repair associated severity ISO ClinVar Annotator: match by term: Colorectal cancer RGD
ClinVar
PMID:16533773 PMID:28492532 PMID:33609447 RGD:126790575 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955538:3,469,322...3,544,704
Ensembl chrNW_004955538:3,470,249...3,544,704
JBrowse link
G Brip1 BRCA1 interacting helicase 1 susceptibility
severity
ISO DNA:frameshift mutation:cds:p.N568fsX9 (human)
ClinVar Annotator: match by term: Colorectal cancer
mRNA:increased expression:colon epithelium (human)
RGD
ClinVar
PMID:22526901 PMID:27165003 PMID:28492532 PMID:30809968 RGD:11252105 RGD:11252117 NCBI chrNW_004955451:2,705,834...2,820,610
Ensembl chrNW_004955451:2,707,793...2,818,592
JBrowse link
G Btbd1 BTB domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,621,343...13,657,276
Ensembl chrNW_004955416:13,621,118...13,657,581
JBrowse link
G Btk Bruton tyrosine kinase exacerbates
disease_progression
ISO protein:increased expression:colorectum (human) RGD PMID:31238520 PMID:31518438 RGD:151347850 RGD:151347852 NCBI chrNW_004955503:7,483,819...7,515,085
Ensembl chrNW_004955503:7,482,793...7,515,120
JBrowse link
G Bub1 BUB1 mitotic checkpoint serine/threonine kinase ISO ClinVar Annotator: match by term: Colorectal cancer with chromosomal instability, somatic OMIM
ClinVar
PMID:9521327 NCBI chrNW_004955470:3,152,798...3,190,185
Ensembl chrNW_004955470:3,152,758...3,191,888
JBrowse link
G Bub1b BUB1 mitotic checkpoint serine/threonine kinase B ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12
OMIM
ClinVar
PMID:9536098 PMID:17576681 PMID:20516114 PMID:24033266 PMID:24728327 More... NCBI chrNW_004955416:7,105,302...7,159,121
Ensembl chrNW_004955416:7,105,261...7,160,012
JBrowse link
G Ca12 carbonic anhydrase 12 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,927,730...11,975,553
Ensembl chrNW_004955450:11,943,340...11,975,928
JBrowse link
G Calml4 calmodulin like 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,886,565...7,894,143
Ensembl chrNW_004955450:7,887,414...7,894,143
JBrowse link
G Calr calreticulin ISO protein:decreased expression:colorectum (human) RGD PMID:26913609 RGD:150521695 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372
JBrowse link
G Capn3 calpain 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,070,479...9,121,099
Ensembl chrNW_004955416:9,070,399...9,117,794
JBrowse link
G Casp9 caspase 9 no_association ISO DNA:SNPs::rs4646077, rs4233532, rs2881930 (human)
DNA:SNP:promoter:-1263A>G (human)
RGD PMID:21538054 PMID:23303631 RGD:13210582 RGD:13210584 NCBI chrNW_004955527:2,613,691...2,630,217
Ensembl chrNW_004955527:2,613,683...2,629,738
JBrowse link
G Catsper2 cation channel sperm associated 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,925,106...3,940,566 JBrowse link
G Cbl Cbl proto-oncogene disease_progression ISO RGD PMID:30029779 RGD:126925222 NCBI chrNW_004955412:20,307,011...20,388,539
Ensembl chrNW_004955412:20,307,011...20,388,539
JBrowse link
G Ccdc32 coiled-coil domain containing 32 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,464,498...7,482,153
Ensembl chrNW_004955416:7,462,770...7,479,242
JBrowse link
G Ccdc33 coiled-coil domain containing 33 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,485,789...3,576,768
Ensembl chrNW_004955450:3,481,232...3,576,771
JBrowse link
G Ccdc9b coiled-coil domain containing 9B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,258,446...7,268,342
Ensembl chrNW_004955416:7,257,232...7,267,171
JBrowse link
G Ccnb2 cyclin B2 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:15,558,874...15,587,456
Ensembl chrNW_004955450:15,559,022...15,581,760
JBrowse link
G Ccnd1 cyclin D1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to ClinVar
OMIM
PMID:10667569 PMID:11459873 PMID:12097293 PMID:23502783 PMID:24870244 NCBI chrNW_004955422:16,449,921...16,462,676
Ensembl chrNW_004955422:16,448,770...16,463,300
JBrowse link
G Ccnd2 cyclin D2 severity ISO mRNA, protein:increased expression:colorectum RGD PMID:19508551 PMID:28933597 PMID:31511084 RGD:151664740 RGD:151664741 RGD:151665111 NCBI chrNW_004955413:2,083,351...2,108,450
Ensembl chrNW_004955413:2,083,351...2,103,430
JBrowse link
G Ccndbp1 cyclin D1 binding protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,772,823...9,782,047
Ensembl chrNW_004955416:9,772,823...9,782,047
JBrowse link
G Ccpg1 cell cycle progression 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:530,734...562,577
Ensembl chrNW_004955409:542,902...561,840
JBrowse link
G Cd276 CD276 molecule ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,884,437...3,896,416 JBrowse link
G Cdan1 codanin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,393,170...9,403,374
Ensembl chrNW_004955416:9,393,197...9,403,370
JBrowse link
G Cdc73 cell division cycle 73 ameliorates ISO mRNA:increased expression:colorectum (human) RGD PMID:21315421 RGD:150539448 NCBI chrNW_004955406:30,533,919...30,665,812
Ensembl chrNW_004955406:30,533,060...30,665,812
JBrowse link
G Cdh1 cadherin 1 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967
JBrowse link
G Cdin1 CDAN1 interacting nuclease 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:3,805,968...4,014,328
Ensembl chrNW_004955416:3,805,341...4,015,232
JBrowse link
G Celf6 CUGBP Elav-like family member 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,822,125...4,853,572
Ensembl chrNW_004955450:4,822,125...4,855,238
JBrowse link
G Cemip cell migration inducing hyaluronidase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,562,047...11,699,925
Ensembl chrNW_004955416:11,613,316...11,699,925
JBrowse link
G Cep152 centrosomal protein 152 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,121,332...5,210,729
Ensembl chrNW_004955409:5,122,325...5,210,733
JBrowse link
G Cfap161 cilia and flagella associated protein 161 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,833,610...11,844,452 JBrowse link
G Cgnl1 cingulin like 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:16,785,358...16,913,718
Ensembl chrNW_004955450:16,785,080...16,871,515
JBrowse link
G Chac1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,828,917...7,831,368
Ensembl chrNW_004955416:7,828,482...7,832,391
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 exacerbates ISO mRNA:increased expression:lymph node (human) RGD PMID:28486105 PMID:29467924 RGD:153323299 RGD:153323304 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225
JBrowse link
G Chek2 checkpoint kinase 2 susceptibility ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
DNA:loss of heterozygosity
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar
RGD
PMID:10617473 PMID:11053450 PMID:11298456 PMID:11390408 PMID:11461078 More... RGD:2289706 NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Chfr checkpoint with forkhead and ring finger domains ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:23230001 PMID:25948378 PMID:28492532 PMID:30503519 NCBI chrNW_004955482:233,485...267,064
Ensembl chrNW_004955482:233,486...267,064
JBrowse link
G Chp1 calcineurin like EF-hand protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,090,034...8,131,605
Ensembl chrNW_004955416:8,090,034...8,132,870
JBrowse link
G Chrm5 cholinergic receptor muscarinic 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:526,718...528,353
Ensembl chrNW_004955416:526,755...528,353
JBrowse link
G Chrna3 cholinergic receptor nicotinic alpha 3 subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:979,630...1,011,316
Ensembl chrNW_004955450:977,075...1,011,372
JBrowse link
G Chrna5 cholinergic receptor nicotinic alpha 5 subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:945,400...974,129
Ensembl chrNW_004955450:946,898...974,457
JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:30,687,518...30,798,700
Ensembl chrNW_004955416:30,687,478...30,798,700
JBrowse link
G Chrnb4 cholinergic receptor nicotinic beta 4 subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,013,897...1,030,232
Ensembl chrNW_004955450:1,013,607...1,030,282
JBrowse link
G Chst14 carbohydrate sulfotransferase 14 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,391,281...7,393,137
Ensembl chrNW_004955416:7,391,282...7,392,355
JBrowse link
G Ciao2a cytosolic iron-sulfur assembly component 2A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,306,099...11,327,688
Ensembl chrNW_004955450:11,306,099...11,331,758
JBrowse link
G Cib1 calcium and integrin binding 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,102,632...15,106,372
Ensembl chrNW_004955416:15,102,632...15,106,372
JBrowse link
G Cib2 calcium and integrin binding family member 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:660,655...674,726
Ensembl chrNW_004955450:659,383...675,634
JBrowse link
G Cilp cartilage intermediate layer protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,231,082...10,244,632
Ensembl chrNW_004955450:10,232,641...10,245,945
JBrowse link
G Cimap1c ciliary microtubule associated protein 1C ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,614,377...2,617,064
Ensembl chrNW_004955450:2,614,261...2,617,324
JBrowse link
G Clk3 CDC like kinase 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,250,169...3,262,977
Ensembl chrNW_004955450:3,250,444...3,262,920
JBrowse link
G Cln6 CLN6 transmembrane ER protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,876,572...7,885,305
Ensembl chrNW_004955450:7,876,522...7,886,581
JBrowse link
G Clpx caseinolytic mitochondrial matrix peptidase chaperone subunit X ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,256,124...10,289,832
Ensembl chrNW_004955450:10,256,124...10,289,832
JBrowse link
G Commd4 COMM domain containing 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,891,920...2,895,009
Ensembl chrNW_004955450:2,892,125...2,893,666
JBrowse link
G Cops2 COP9 signalosome subunit 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,859,971...4,888,487
Ensembl chrNW_004955409:4,859,972...4,891,575
JBrowse link
G Coro2b coronin 2B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,522,447...7,573,043
Ensembl chrNW_004955450:7,521,188...7,573,575
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,963,300...14,038,691
Ensembl chrNW_004955416:13,981,657...14,039,705
JBrowse link
G Cplx3 complexin 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,105,364...3,110,246
Ensembl chrNW_004955450:3,105,203...3,110,374
JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:810,206...817,011
Ensembl chrNW_004955450:810,151...817,059
JBrowse link
G Crtc3 CREB regulated transcription coactivator 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,672,291...14,768,879
Ensembl chrNW_004955416:14,672,291...14,765,893
JBrowse link
G Csf1r colony stimulating factor 1 receptor exacerbates ISO protein:decreased expression:colorectum (human) RGD PMID:32118593 RGD:150524285 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Csk C-terminal Src kinase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,127,561...3,144,550
Ensembl chrNW_004955450:3,127,561...3,144,550
JBrowse link
G Csnk1g1 casein kinase 1 gamma 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,088,601...11,239,227
Ensembl chrNW_004955450:11,102,257...11,233,601
JBrowse link
G Cspg4 chondroitin sulfate proteoglycan 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,631,310...2,663,118
Ensembl chrNW_004955450:2,631,327...2,662,269
JBrowse link
G Ctdspl2 CTD small phosphatase like 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,970,487...11,046,179
Ensembl chrNW_004955416:10,970,492...11,046,179
JBrowse link
G Ctnna1 catenin alpha 1 ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm ClinVar PMID:28492532 NCBI chrNW_004955418:1,592,555...1,754,423
Ensembl chrNW_004955418:1,592,229...1,754,689
JBrowse link
G Ctnnb1 catenin beta 1 treatment
disease_progression
ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
Human cells in mouse model
protein:increased expression:cytoplasm, nucleus
OMIM
ClinVar
RGD
PMID:17893236 PMID:23033978 PMID:24614104 PMID:25326669 PMID:25741868 More... RGD:153297782 RGD:2289840 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Ctnnbl1 catenin beta like 1 ISO DNA:snps:introns: c.326+4380A>G, c.1213+1838T>C, c.1393-7258G>A (rs2344481, rs2281148, rs2235460) (human) RGD PMID:21537400 RGD:9850254 NCBI chrNW_004955445:18,809,389...18,975,858
Ensembl chrNW_004955445:18,809,023...18,976,255
JBrowse link
G Ctps2 CTP synthase 2 resistance ISO mRNA:increased expression:tumor (human) RGD PMID:21378502 RGD:5132879 NCBI chrNW_004955519:1,587,998...1,647,810
Ensembl chrNW_004955519:1,588,182...1,647,958
JBrowse link
G Ctsh cathepsin H ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:39,237...54,881
Ensembl chrNW_004955533:39,284...54,837
JBrowse link
G Ctxn2 cortexin 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,685,318...5,695,682
Ensembl chrNW_004955409:5,685,318...5,695,682
JBrowse link
G CUNH11orf65 chromosome unknown C11orf65 homolog ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar PMID:100011 PMID:9443866 PMID:9887333 PMID:10330348 PMID:10817650 More... NCBI chrNW_004955412:10,533,174...10,567,364
Ensembl chrNW_004955412:10,533,441...10,567,612
JBrowse link
G CUNH15orf39 chromosome unknown C15orf39 homolog ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,900,456...2,905,748
Ensembl chrNW_004955450:2,900,027...2,913,501
JBrowse link
G CUNH15orf40 chromosome unknown C15orf40 homolog ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,669,931...13,681,991
Ensembl chrNW_004955416:13,670,036...13,674,912
JBrowse link
G CUNH15orf48 chromosome unknown C15orf48 homolog ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,023,847...8,027,043
Ensembl chrNW_004955409:8,024,171...8,026,496
JBrowse link
G CUNH15orf61 chromosome unknown C15orf61 homolog ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:8,473,239...8,480,571
Ensembl chrNW_004955450:8,473,239...8,480,708
JBrowse link
G CUNH15orf62 chromosome unknown C15orf62 homolog ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,621,794...7,624,837
Ensembl chrNW_004955416:7,621,794...7,624,837
JBrowse link
G Cux1 cut like homeobox 1 exacerbates ISO mRNA:increased expression:colorectum (human) RGD PMID:33014778 RGD:152985540 NCBI chrNW_004955456:15,292,562...15,636,835
Ensembl chrNW_004955456:15,276,959...15,638,004
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 severity
ameliorates
exacerbates
disease_progression
ISO mRNA:increased expression:colonic epithelium (human)
mRNA:increased expression:colon (human)
human cells in mouse model
mRNA,protein:increased expression:colon (human)
mRNA:increased expression:colorectum (human)
protein:increased expression:blood serum (human)
human cells in mouse model; protein:increased expression:colorectum (human)
RGD PMID:15837989 PMID:27330310 PMID:28515923 PMID:28739729 PMID:29481800 More... RGD:151665323 RGD:151665332 RGD:151708720 RGD:151708721 RGD:151708726 RGD:151709000 RGD:151893497 RGD:151893498 RGD:152023657 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109
JBrowse link
G Dab2ip DAB2 interacting protein disease_progression
treatment
ISO protein:decreased expression:colorectum (human)
human cells in mouse model
RGD PMID:26564738 PMID:30974224 PMID:31081086 RGD:11556182 RGD:151665164 RGD:151665166 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
G Dapk2 death associated protein kinase 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,348,566...11,443,908
Ensembl chrNW_004955450:11,348,566...11,455,582
JBrowse link
G Dcc DCC netrin 1 receptor ISO ClinVar Annotator: match by term: Colorectal cancer OMIM
ClinVar
PMID:25741868 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 severity ISO mRNA:increased expression:colon (mouse)
protein:increased expression, increased phosphorylation:tumor cells (human)
RGD PMID:29438985 PMID:30666650 RGD:151347685 RGD:151347840 NCBI chrNW_004955583:820,893...838,515
Ensembl chrNW_004955583:820,931...841,654
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 disease_progression ISO RGD PMID:28476831 RGD:150429706 NCBI chrNW_004955462:13,578,638...13,644,834
Ensembl chrNW_004955462:13,584,724...13,642,968
JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked exacerbates
treatment
ameliorates
ISO protein:increased expression:colorectum, nucleus (human)
protein:increased expression:colorectum (human)
human cells in mouse model
RGD PMID:26087195 PMID:26892600 PMID:27007150 PMID:28761359 PMID:31391454 RGD:11096798 RGD:151356502 RGD:151356503 RGD:151356505 RGD:151356658 NCBI chrNW_004955565:1,387,043...1,403,624
Ensembl chrNW_004955565:1,386,973...1,404,220
JBrowse link
G Ddx51 DEAD-box helicase 51 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:632,030...636,959 JBrowse link
G Dennd4a DENN domain containing 4A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,723,234...9,851,303
Ensembl chrNW_004955450:9,723,221...9,850,090
JBrowse link
G Det1 DET1 partner of COP1 E3 ubiquitin ligase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,393,199...16,408,144
Ensembl chrNW_004955416:16,393,156...16,408,613
JBrowse link
G Dicer1 dicer 1, ribonuclease III disease_progression
susceptibility
ISO DNA:SNP: :rs3742330 A>G (human) RGD PMID:24649159 PMID:30833603 RGD:149735326 RGD:149735345 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G Dis3l DIS3 like exosome 3'-5' exoribonuclease ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,279,323...9,313,402
Ensembl chrNW_004955450:9,279,323...9,314,507
JBrowse link
G Disp2 dispatched RND transporter family member 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,282,048...7,297,896
Ensembl chrNW_004955416:7,282,048...7,299,179
JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: DLC1-related condition OMIM
ClinVar
PMID:25741868 PMID:28492532 NCBI chrNW_004955463:3,599,415...3,981,187
Ensembl chrNW_004955463:3,598,985...3,990,849
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,807,049...7,816,346
Ensembl chrNW_004955416:7,807,049...7,817,420
JBrowse link
G Dmd dystrophin ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer ClinVar NCBI chrNW_004955535:1,283,084...3,297,015
Ensembl chrNW_004955535:1,283,523...3,299,542
JBrowse link
G Dmxl2 Dmx like 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,934,755...3,089,572
Ensembl chrNW_004955409:2,934,740...3,089,703
JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:498,450...523,067 JBrowse link
G Dnaja4 DnaJ heat shock protein family (Hsp40) member A4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:757,485...771,033
Ensembl chrNW_004955450:757,485...771,033
JBrowse link
G Dnajc17 DnaJ heat shock protein family (Hsp40) member C17 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,620,553...7,672,344
Ensembl chrNW_004955416:7,616,716...7,672,342
JBrowse link
G Dph6 diphthamine biosynthesis 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:2,701,724...2,860,330
Ensembl chrNW_004955416:2,701,724...2,859,802
JBrowse link
G Dpp8 dipeptidyl peptidase 8 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,976,452...10,036,652
Ensembl chrNW_004955450:9,976,452...10,036,652
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase ISO protein:increased activity:liver RGD PMID:23197286 RGD:11251746 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Dsn1 DSN1 component of MIS12 kinetochore complex disease_progression ISO RGD PMID:27329586 RGD:27372885 NCBI chrNW_004955422:24,876,340...24,896,435 JBrowse link
G Dtwd1 DTW domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,550,906...4,568,484
Ensembl chrNW_004955409:4,548,237...4,568,477
JBrowse link
G Duox1 dual oxidase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,228,754...8,256,575
Ensembl chrNW_004955409:8,229,199...8,255,003
JBrowse link
G Duox2 dual oxidase 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,270,657...8,288,201
Ensembl chrNW_004955409:8,271,164...8,287,096
JBrowse link
G Duoxa1 dual oxidase maturation factor 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,256,707...8,266,891
Ensembl chrNW_004955409:8,256,707...8,266,891
JBrowse link
G Duoxa2 dual oxidase maturation factor 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,266,873...8,270,486
Ensembl chrNW_004955409:8,266,873...8,270,486
JBrowse link
G Dut deoxyuridine triphosphatase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
JBrowse link
G Edc3 enhancer of mRNA decapping 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,193,150...3,249,933
Ensembl chrNW_004955450:3,193,150...3,249,933
JBrowse link
G Eef1e1 eukaryotic translation elongation factor 1 epsilon 1 ISO protein:decreased expression:colorectum: RGD PMID:21789020 RGD:10401218 NCBI chrNW_004955465:5,878,055...5,895,232
Ensembl chrNW_004955465:5,878,058...5,895,223
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO protein:increased expression:colon (human) RGD PMID:24589652 RGD:153297816 NCBI chrNW_004955495:4,800,103...4,807,714
Ensembl chrNW_004955495:4,799,922...4,807,252
JBrowse link
G Efl1 elongation factor like GTPase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:12,658,177...12,789,657
Ensembl chrNW_004955416:12,655,563...12,789,731
JBrowse link
G Egfr epidermal growth factor receptor resistance ISO human tumor in mouse model
mRNA, protein:increased expression (human)
RGD PMID:15269313 PMID:20010090 PMID:21398618 RGD:5131455 RGD:5131632 RGD:5131871 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ehd4 EH domain containing 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,686,709...8,758,096
Ensembl chrNW_004955416:8,686,709...8,739,400
JBrowse link
G Eid1 EP300 interacting inhibitor of differentiation 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,066,042...5,067,747
Ensembl chrNW_004955409:5,067,089...5,067,658
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:6,897,897...7,005,602
Ensembl chrNW_004955416:6,897,848...7,009,965
JBrowse link
G Eif3j eukaryotic translation initiation factor 3 subunit J ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,066,030...11,085,054
Ensembl chrNW_004955416:11,067,782...11,084,305
JBrowse link
G Eif5a eukaryotic translation initiation factor 5A disease_progression ISO RGD PMID:23322277 RGD:151356994 NCBI chrNW_004955467:9,603,800...9,608,490 JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,223,213...10,226,978
Ensembl chrNW_004955416:10,198,508...10,226,120
JBrowse link
G Emc4 ER membrane protein complex subunit 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:375,736...380,825
Ensembl chrNW_004955416:375,736...380,846
JBrowse link
G Emc7 ER membrane protein complex subunit 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:459,668...482,562
Ensembl chrNW_004955416:459,668...484,278
JBrowse link
G Emx2 empty spiracles homeobox 2 ameliorates ISO human cells in mouse model RGD PMID:27712600 RGD:153323291 NCBI chrNW_004955431:22,192,446...22,199,141
Ensembl chrNW_004955431:22,192,446...22,199,279
JBrowse link
G Ep300 E1A binding protein p300 ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
OMIM
ClinVar
PMID:15706485 PMID:18414213 PMID:24476420 PMID:24728327 PMID:25741868 More... NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Ep400 E1A binding protein p400 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:639,316...746,331
Ensembl chrNW_004955482:641,214...746,331
JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,784,211...9,800,453
Ensembl chrNW_004955416:9,784,260...9,798,194
JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955451:14,442,816...14,456,009
Ensembl chrNW_004955451:14,442,816...14,459,379
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 susceptibility ISO DNA:polymorphism:promoter:-782G>T (human) RGD PMID:18094435 RGD:2289977 NCBI chrNW_004955457:3,177,905...4,236,152
Ensembl chrNW_004955457:3,177,991...4,228,558
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit sexual_dimorphism ISO DNA:SNP:3'utr: (rs3212986) (human)
DNA:SNP:exon: (rs3212986) (human)
mRNA:increased expression:colorectum (human)
RGD PMID:16951227 PMID:29151331 PMID:29516665 RGD:153344543 RGD:155260343 RGD:155260348 NCBI chrNW_004955555:2,393,510...2,430,180
Ensembl chrNW_004955555:2,393,278...2,406,582
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO mRNA:increased expression:colorectum (human) RGD PMID:16951227 RGD:155260343 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO mRNA:increased expression:colorectum (human) RGD PMID:16951227 RGD:155260343 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO mRNA:increased expression:colorectum (human) RGD PMID:16951227 RGD:155260343 NCBI chrNW_004955442:4,833,453...4,861,201
Ensembl chrNW_004955442:4,831,721...4,861,122
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor susceptibility ISO mRNA:increased expression:colorectum (human)
DNA:missense mutation:CDS:p.R1213G (human)
DNA:SNP:exon: (rs2228526) (human)
RGD PMID:16951227 PMID:17119055 PMID:29151331 RGD:155260340 RGD:155260343 RGD:155260348 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Ercc6l ERCC excision repair 6 like, spindle assembly checkpoint helicase exacerbates ISO mRNA, protein:increased expression:colorectum (human) RGD PMID:31289493 RGD:155598681 NCBI chrNW_004955475:11,596,405...11,629,186 JBrowse link
G Esr2 estrogen receptor 2 susceptibility ISO DNA:repeat:3' utr:g.dupCA (human) RGD PMID:21884200 RGD:7364791 NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946
JBrowse link
G Etfa electron transfer flavoprotein subunit alpha ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,392,526...1,451,591
Ensembl chrNW_004955450:1,392,479...1,451,591
JBrowse link
G Exd1 exonuclease 3'-5' domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,032,189...8,089,903 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit no_association
disease_progression
ISO DNA:SNPs: :rs2302427, rs41277434, rs6958683 (human)
DNA:SNP: :rs3757441 (human)
RGD PMID:21539681 PMID:21926398 PMID:26871294 RGD:126779590 RGD:126779594 RGD:126781700 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G F7 coagulation factor VII ISO human protein in a rat model RGD PMID:19062044 RGD:11049532 NCBI chrNW_004955404:685,170...692,797
Ensembl chrNW_004955404:680,594...693,665
JBrowse link
G Fah fumarylacetoacetate hydrolase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:904,294...921,730
Ensembl chrNW_004955533:904,295...921,730
JBrowse link
G Fam219b family with sequence similarity 219 member B ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:3,054,761...3,060,064
Ensembl chrNW_004955450:3,053,855...3,060,064
JBrowse link
G Fam227b family with sequence similarity 227 member B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,568,562...4,769,010
Ensembl chrNW_004955409:4,586,362...4,770,684
JBrowse link
G Fam81a family with sequence similarity 81 member A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,282,831...15,324,630
Ensembl chrNW_004955450:15,281,897...15,328,648
JBrowse link
G Fam98b family with sequence similarity 98 member B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:5,457,232...5,486,744
Ensembl chrNW_004955416:5,457,274...5,487,042
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:29,722,280...29,757,960
Ensembl chrNW_004955416:29,722,280...29,757,742
JBrowse link
G Fanci FA complementation group I ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955416:15,788,812...15,857,933
Ensembl chrNW_004955416:15,788,922...15,853,480
JBrowse link
G Fasn fatty acid synthase ISO mRNA,protein:increased expression:colorectum: RGD PMID:32525817 RGD:153350127 NCBI chrNW_004955506:1,063,002...1,079,939
Ensembl chrNW_004955506:1,063,002...1,079,939
JBrowse link
G Fat1 FAT atypical cadherin 1 sexual_dimorphism ISO left-sided colorectal cancer;DNA:mutations:multiple (human) RGD PMID:33106877 RGD:150539450 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211
JBrowse link
G Fbn1 fibrillin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,281,603...5,502,547
Ensembl chrNW_004955409:5,281,603...5,504,761
JBrowse link
G Fbrsl1 fibrosin like 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:442,043...501,579 JBrowse link
G Fbxl22 F-box and leucine rich repeat protein 22 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,719,678...11,728,093 JBrowse link
G Fbxo22 F-box protein 22 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,152,383...1,171,257
Ensembl chrNW_004955450:1,152,383...1,171,250
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955471:6,852,459...7,026,590
Ensembl chrNW_004955471:6,848,101...6,955,881
JBrowse link
G Fem1b fem-1 homolog B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,834,487...7,847,334
Ensembl chrNW_004955450:7,834,487...7,847,334
JBrowse link
G Fgf7 fibroblast growth factor 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,633,542...4,686,768
Ensembl chrNW_004955409:4,632,858...4,686,860
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO ClinVar Annotator: match by term: Malignant Colorectal Neoplasm OMIM
ClinVar
PMID:7647778 PMID:8723106 PMID:8841188 PMID:9042914 PMID:9107244 More... NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 ISO protein:increased expression:colorectum (human) RGD PMID:24503538 RGD:150520155 NCBI chrNW_004955408:29,370,480...29,383,531
Ensembl chrNW_004955408:29,370,468...29,383,971
JBrowse link
G Flcn folliculin ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
OMIM
ClinVar
PMID:9536098 PMID:12204536 PMID:12471204 PMID:12843323 PMID:15852235 More... NCBI chrNW_004955577:672,774...694,140
Ensembl chrNW_004955577:672,410...694,140
JBrowse link
G Flt4 fms related receptor tyrosine kinase 4 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:11807987 PMID:25741868 PMID:28492532 NCBI chrNW_004955408:98,995...137,922
Ensembl chrNW_004955408:107,056...140,056
JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit ISO MRNA, protein:increased expression:colon (human)
mRNA:increased expression:colon (human)
RGD PMID:30114390 PMID:35034245 RGD:153344553 RGD:153344554 NCBI chrNW_004955469:10,297,179...10,319,180
Ensembl chrNW_004955469:10,297,179...10,319,180
JBrowse link
G Foxa1 forkhead box A1 disease_progression ISO RGD PMID:27484093 PMID:31081047 RGD:151665746 RGD:151665754 NCBI chrNW_004955409:23,598,127...23,599,827
Ensembl chrNW_004955409:23,598,127...23,599,461
JBrowse link
G Foxb1 forkhead box B1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:14,867,941...14,902,990 JBrowse link
G Foxp3 forkhead box P3 ISO DNA:hypomethylation:colorectum RGD PMID:24291052 RGD:38599002 NCBI chrNW_004955543:731,707...742,606
Ensembl chrNW_004955543:731,707...742,606
JBrowse link
G Frmd5 FERM domain containing 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,338,061...10,683,069
Ensembl chrNW_004955416:10,338,061...10,682,810
JBrowse link
G Fsd2 fibronectin type III and SPRY domain containing 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,864,050...13,898,693
Ensembl chrNW_004955416:13,852,756...13,896,841
JBrowse link
G Fsip1 fibrous sheath interacting protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:6,507,177...6,710,526
Ensembl chrNW_004955416:6,509,477...6,717,115
JBrowse link
G Fzd3 frizzled class receptor 3 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar NCBI chrNW_004955403:50,899,658...50,959,077
Ensembl chrNW_004955403:50,899,523...50,959,071
JBrowse link
G Gabpb1 GA binding protein transcription factor subunit beta 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,983,857...4,036,433
Ensembl chrNW_004955409:4,004,480...4,039,681
JBrowse link
G Gad1 glutamate decarboxylase 1 severity ISO mRNA:increased expression:colon (human) RGD PMID:26549033 RGD:151356759 NCBI chrNW_004955449:3,964,006...4,001,850
Ensembl chrNW_004955449:3,963,705...4,001,850
JBrowse link
G Galk2 galactokinase 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,751,764...4,852,395
Ensembl chrNW_004955409:4,751,764...4,860,584
JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 susceptibility ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm OMIM
ClinVar
PMID:19617566 PMID:24038392 PMID:25637381 PMID:25741868 PMID:26021770 More... NCBI chrNW_004955419:26,760,500...26,788,933
Ensembl chrNW_004955419:26,760,500...26,788,933
JBrowse link
G Ganc glucosidase alpha, neutral C ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955416:8,990,852...9,063,840
Ensembl chrNW_004955416:8,990,852...9,063,826
JBrowse link
G Gata1 GATA binding protein 1 disease_progression ISO RGD PMID:31069596 RGD:149735196 NCBI chrNW_004955543:334,581...342,042
Ensembl chrNW_004955543:334,061...342,061
JBrowse link
G Gatm glycine amidinotransferase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,068,524...8,084,603
Ensembl chrNW_004955409:8,068,476...8,084,603
JBrowse link
G Gchfr GTP cyclohydrolase I feedback regulator ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,617,333...7,620,455
Ensembl chrNW_004955416:7,617,333...7,620,455
JBrowse link
G Gclc glutamate-cysteine ligase catalytic subunit ISO mRNA:increased expression:colon: RGD PMID:8705999 RGD:11049536 NCBI chrNW_004955411:2,593,523...2,617,553
Ensembl chrNW_004955411:2,593,541...2,616,539
JBrowse link
G Gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,204,502...15,211,747
Ensembl chrNW_004955450:15,204,915...15,206,234
JBrowse link
G Gdpgp1 GDP-D-glucose phosphorylase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,098,922...15,102,499
Ensembl chrNW_004955416:15,098,922...15,102,499
JBrowse link
G Gjd2 gap junction protein delta 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:2,104,985...2,134,937
Ensembl chrNW_004955416:2,104,985...2,134,937
JBrowse link
G Glce glucuronic acid epimerase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,149,721...7,226,835
Ensembl chrNW_004955450:7,149,721...7,227,524
JBrowse link
G Gldn gliomedin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,128,718...3,179,083
Ensembl chrNW_004955409:3,128,684...3,179,083
JBrowse link
G Gli1 GLI family zinc finger 1 ISO RGD PMID:22901214 RGD:150520174 NCBI chrNW_004955458:5,181,761...5,193,500
Ensembl chrNW_004955458:5,185,225...5,193,196
JBrowse link
G Gnb5 G protein subunit beta 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,621,144...2,642,298
Ensembl chrNW_004955409:2,619,718...2,641,308
JBrowse link
G Golga3 golgin A3 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:23230001 PMID:25948378 PMID:28492532 PMID:30503519 NCBI chrNW_004955482:272,430...313,499
Ensembl chrNW_004955482:272,255...313,499
JBrowse link
G Golm2 golgi membrane protein 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,812,414...10,949,563
Ensembl chrNW_004955416:10,812,722...10,947,505
JBrowse link
G Gpr176 G protein-coupled receptor 176 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:6,735,790...6,879,078
Ensembl chrNW_004955416:6,735,636...6,878,982
JBrowse link
G Gpx1 glutathione peroxidase 1 susceptibility ISO DNA:missense mutation:CDS:p.P198L (human)
mRNA:decreased expression:colorectum (human)
RGD PMID:19428376 PMID:25550558 RGD:152023636 RGD:152023662 NCBI chrNW_004955532:1,298,336...1,298,830 JBrowse link
G Gpx2 glutathione peroxidase 2 disease_progression ISO protein:increased expression:large intestine (human) RGD PMID:18479189 RGD:152998902 NCBI chrNW_004955466:4,983,532...4,987,780
Ensembl chrNW_004955466:4,984,631...4,987,457
JBrowse link
G Gpx4 glutathione peroxidase 4 susceptibility ISO DNA:silent mutation:CDS: (rs713041) (human) RGD PMID:20378690 RGD:152995451 NCBI chrNW_004955495:6,767,969...6,772,256
Ensembl chrNW_004955495:6,767,975...6,772,178
JBrowse link
G Gramd2a GRAM domain containing 2A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,936,357...4,960,643
Ensembl chrNW_004955450:4,954,223...4,960,280
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25741868 PMID:25992589 PMID:26493165 PMID:26947005 More... NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A sexual_dimorphism ISO right-sided colorectal cancer;DNA:mutations:multiple (human)
DNA:hypermethylation:promoter (human)
RGD PMID:17922030 PMID:33106877 RGD:150539450 RGD:150539451 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059
JBrowse link
G Grp gastrin releasing peptide ISO protein:increased expression:serum (human) RGD PMID:30146822 RGD:401700396 NCBI chrNW_004955402:43,382,608...43,393,452
Ensembl chrNW_004955402:43,382,552...43,393,463
JBrowse link
G Gtf2a2 general transcription factor IIA subunit 2 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:15,181,824...15,195,594 JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,923,560...9,947,519
Ensembl chrNW_004955450:9,923,560...9,942,658
JBrowse link
G Hapln3 hyaluronan and proteoglycan link protein 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,105,937...16,122,114
Ensembl chrNW_004955416:16,105,772...16,122,139
JBrowse link
G Haus2 HAUS augmin like complex subunit 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,237,713...9,252,920
Ensembl chrNW_004955416:9,237,731...9,252,561
JBrowse link
G Hcn4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,139,852...4,181,377
Ensembl chrNW_004955450:4,139,852...4,181,377
JBrowse link
G Hdac1 histone deacetylase 1 ISO mRNA:increased expression:colon: RGD PMID:23724067 RGD:9590193 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864
JBrowse link
G Hdac3 histone deacetylase 3 ISO mRNA:increased expression:colon: RGD PMID:23724067 RGD:9590193 NCBI chrNW_004955415:12,138,520...12,154,234
Ensembl chrNW_004955415:12,138,870...12,154,234
JBrowse link
G Hdac5 histone deacetylase 5 ISO mRNA:increased expression:colon: RGD PMID:23724067 RGD:9590193 NCBI chrNW_004955451:17,223,217...17,246,451
Ensembl chrNW_004955451:17,223,287...17,244,051
JBrowse link
G Hdac7 histone deacetylase 7 ISO mRNA:increased expression:colon: RGD PMID:23724067 RGD:9590193 NCBI chrNW_004955500:6,692,656...6,707,453
Ensembl chrNW_004955500:6,693,668...6,709,864
JBrowse link
G Hdc histidine decarboxylase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,051,574...4,072,641
Ensembl chrNW_004955409:4,051,271...4,072,642
JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,525,245...11,719,992
Ensembl chrNW_004955450:11,525,246...11,719,992
JBrowse link
G Hexa hexosaminidase subunit alpha ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,790,342...4,806,862
Ensembl chrNW_004955450:4,790,268...4,806,734
JBrowse link
G Hfe homeostatic iron regulator susceptibility ISO DNA:missense mutation, haplotype:cds:p.C282Y (human) RGD PMID:10383894 RGD:8694350 NCBI chrNW_004955483:933,269...941,070
Ensembl chrNW_004955483:932,352...941,143
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ameliorates ISO human cells in mouse model RGD PMID:30789971 RGD:151893289 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Hilpda hypoxia inducible lipid droplet associated disease_progression ISO mRNA:increased expression:colon (human)
human cells in mouse model
RGD PMID:23916472 RGD:153344575 NCBI chrNW_004955479:9,453,627...9,455,680 JBrowse link
G Hk1 hexokinase 1 ISO RGD PMID:19877886 RGD:11353883 NCBI chrNW_004955437:21,733,314...21,824,303
Ensembl chrNW_004955437:21,731,584...21,816,324
JBrowse link
G Hmg20a high mobility group 20A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,285,444...2,362,696
Ensembl chrNW_004955450:2,285,625...2,353,978
JBrowse link
G Hnf1a HNF1 homeobox A treatment ISO RNA:increased expression:colon (human)
DNA:SNPs:multiple (human)
RGD PMID:27433921 PMID:29066969 RGD:150540313 RGD:150540315 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K severity ISO protein:increased expression:colonic epithelium, cytoplasm (human) RGD PMID:21194727 RGD:9999439 NCBI chrNW_004955432:3,246,090...3,257,774
Ensembl chrNW_004955432:3,246,092...3,257,774
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO protein:decreased expression:colonic epithelium, nucleus (human) RGD PMID:21194727 RGD:9999439 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554
JBrowse link
G Homer2 homer scaffold protein 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,671,115...13,828,413
Ensembl chrNW_004955416:13,741,161...13,818,060
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 disease_progression ISO protein: increased expression: serum RGD PMID:19578980 RGD:6480104 NCBI chrNW_004955412:23,863,513...23,867,984
Ensembl chrNW_004955412:23,862,590...23,867,984
JBrowse link
G Htra1 HtrA serine peptidase 1 exacerbates ISO protein:decreased expression:colonic epithelium,colonic mucosa (human)
mRNA, protein:increased expression,decreased expression:colorectal mucosa (human)
RGD PMID:28586045 PMID:32486357 RGD:152977762 RGD:152985530 NCBI chrNW_004955477:761,127...808,396
Ensembl chrNW_004955477:761,127...808,994
JBrowse link
G Htra2 HtrA serine peptidase 2 exacerbates ISO protein:decreased expression:colorectal mucosa (human) RGD PMID:32486357 RGD:152977762 NCBI chrNW_004955424:11,255,756...11,259,170
Ensembl chrNW_004955424:11,255,756...11,259,170
JBrowse link
G Hykk hydroxylysine kinase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:900,783...918,873
Ensembl chrNW_004955450:900,731...921,051
JBrowse link
G Hypk huntingtin interacting protein K ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,258,357...10,259,699
Ensembl chrNW_004955416:10,258,612...10,259,639
JBrowse link
G Ice2 interactor of little elongation complex ELL subunit 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:14,462,730...14,512,708 JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,197,611...15,212,919
Ensembl chrNW_004955416:15,197,366...15,223,363
JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:685,905...703,593
Ensembl chrNW_004955450:685,905...703,586
JBrowse link
G Ier2 immediate early response 2 ISO DNA:hypomethylation:promoter (human) RGD PMID:34311674 RGD:153323328 NCBI chrNW_004955415:32,159,762...32,161,530
Ensembl chrNW_004955415:32,159,935...32,160,624
JBrowse link
G Igdcc3 immunoglobulin superfamily DCC subclass member 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,087,900...10,121,671
Ensembl chrNW_004955450:10,087,902...10,120,045
JBrowse link
G Igdcc4 immunoglobulin superfamily DCC subclass member 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,057,064...10,083,484
Ensembl chrNW_004955450:10,057,066...10,081,186
JBrowse link
G Igf2 insulin like growth factor 2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955422:13,880,525...13,907,963
Ensembl chrNW_004955422:13,880,471...13,888,566
JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma ISO RGD PMID:28502111 RGD:153305906 NCBI chrNW_004955580:1,053,823...1,069,802
Ensembl chrNW_004955580:1,053,823...1,069,802
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 disease_progression
exacerbates
susceptibility
severity
ISO DNA:hypermethylation:promoter (human)
DNA:hypermethylation: (human)
DNA:SNP:3' utr: (rs6964823) (human)
DNA:polymorphisms: (human)
RGD PMID:21737484 PMID:25928810 PMID:27726312 PMID:29780264 PMID:29796114 More... RGD:150540317 RGD:150540318 RGD:150540319 RGD:150540320 RGD:150540321 RGD:150540322 RGD:150540323 RGD:150540325 RGD:150540327 RGD:150540328 RGD:150540329 RGD:151347633 NCBI chrNW_004955456:3,617,988...3,721,791
Ensembl chrNW_004955456:3,635,380...3,721,791
JBrowse link
G Il16 interleukin 16 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,876,317...11,987,548 JBrowse link
G Il6 interleukin 6 ISO DNA:SNP:promoter:-174G>C (human) RGD PMID:28349833 RGD:14975287 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,690,814...2,692,336 JBrowse link
G Ino80 INO80 complex ATPase subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,870,521...8,020,862
Ensembl chrNW_004955416:7,870,258...7,961,812
JBrowse link
G Insyn1 inhibitory synaptic factor 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,857,563...3,867,905
Ensembl chrNW_004955450:3,857,563...3,867,898
JBrowse link
G Ints14 integrator complex subunit 14 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,892,476...9,925,231
Ensembl chrNW_004955450:9,892,296...9,925,231
JBrowse link
G Iqch IQ motif containing H ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:8,496,190...8,694,810
Ensembl chrNW_004955450:8,495,931...8,694,636
JBrowse link
G Iqgap1 IQ motif containing GTPase activating protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,558,628...14,652,031
Ensembl chrNW_004955416:14,560,292...14,650,036
JBrowse link
G Ireb2 iron responsive element binding protein 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:852,554...898,908
Ensembl chrNW_004955450:852,554...900,011
JBrowse link
G Irs4 insulin receptor substrate 4 disease_progression ISO protein:increased expression:colorectum (human)
protein:increased expression:colorectal mucosa (human)
RGD PMID:29185229 PMID:29353348 PMID:30410539 RGD:151347867 RGD:151347868 RGD:151347869 NCBI chrNW_004955490:7,135,969...7,139,802
Ensembl chrNW_004955490:7,135,969...7,139,802
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,305,534...16,321,596
Ensembl chrNW_004955416:16,311,499...16,321,102
JBrowse link
G Isl2 ISL LIM homeobox 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,471,586...1,475,702
Ensembl chrNW_004955450:1,470,864...1,475,965
JBrowse link
G Islr immunoglobulin superfamily containing leucine rich repeat ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:3,604,116...3,607,126 JBrowse link
G Islr2 immunoglobulin superfamily containing leucine rich repeat 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,636,575...3,645,521
Ensembl chrNW_004955450:3,636,469...3,645,773
JBrowse link
G Itga11 integrin subunit alpha 11 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,730,936...7,823,342
Ensembl chrNW_004955450:7,730,815...7,824,787
JBrowse link
G Itpka inositol-trisphosphate 3-kinase A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,300,059...8,310,225
Ensembl chrNW_004955416:8,299,318...8,309,865
JBrowse link
G Itpkc inositol-trisphosphate 3-kinase C susceptibility ISO DNA:SNP:intron: (rs2607420) (human) RGD PMID:33470690 RGD:152995405 NCBI chrNW_004955578:597,105...614,081
Ensembl chrNW_004955578:598,351...614,081
JBrowse link
G Ivd isovaleryl-CoA dehydrogenase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,327,557...7,341,533
Ensembl chrNW_004955416:7,327,557...7,346,027
JBrowse link
G Jak1 Janus kinase 1 disease_progression
severity
ISO DNA:frameshift mutations RGD PMID:28539123 PMID:29121062 RGD:150524355 RGD:18936998 NCBI chrNW_004955423:25,501,989...25,581,826
Ensembl chrNW_004955423:25,524,075...25,580,604
JBrowse link
G Jmjd7 jumonji domain containing 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,626,931...8,635,337
Ensembl chrNW_004955416:8,626,926...8,633,153
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit ISO associated with ulcerative colitis;protein:increased expression:colonic mucosa (human) RGD PMID:33299340 RGD:151347858 NCBI chrNW_004955415:31,876,508...31,878,289
Ensembl chrNW_004955415:31,876,793...31,877,836
JBrowse link
G Katnbl1 katanin regulatory subunit B1 like 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:391,335...432,806
Ensembl chrNW_004955416:404,548...432,806
JBrowse link
G Kbtbd13 kelch repeat and BTB domain containing 13 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,344,020...10,347,686
Ensembl chrNW_004955450:10,345,753...10,347,129
JBrowse link
G Kcnb2 potassium voltage-gated channel subfamily B member 2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955444:7,237,011...7,646,399 JBrowse link
G Kdm3b lysine demethylase 3B severity ISO protein:decreased expression:colon mucosa (human) RGD PMID:22345654 RGD:9586735 NCBI chrNW_004955418:2,026,254...2,098,223
Ensembl chrNW_004955418:2,026,254...2,098,223
JBrowse link
G Kdm4b lysine demethylase 4B treatment ISO human gene in a mouse model RGD PMID:24473398 RGD:9587755 NCBI chrNW_004955495:4,019,066...4,101,577
Ensembl chrNW_004955495:4,018,770...4,114,604
JBrowse link
G Kdm5c lysine demethylase 5C ISO mRNA:increased expression:colorectum (human) RGD PMID:32552762 RGD:151361177 NCBI chrNW_004955475:243,666...278,064
Ensembl chrNW_004955475:243,666...278,627
JBrowse link
G Kdm6a lysine demethylase 6A ameliorates ISO human cells in a mouse model RGD PMID:31139021 RGD:150429740 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832
JBrowse link
G Kdr kinase insert domain receptor treatment
no_association
ISO DNA:SNPs:promoter:rs10013228, rs2071559 (human)
DNA:SNPs:exons:rs1870377, rs2305948 (human)
RGD PMID:22182247 RGD:126848807 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
JBrowse link
G Kif18a kinesin family member 18A disease_progression ISO RGD PMID:21213216 RGD:11554203 NCBI chrNW_004955476:7,058,682...7,117,496
Ensembl chrNW_004955476:7,058,573...7,109,610
JBrowse link
G Kif23 kinesin family member 23 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,060,240...7,083,818
Ensembl chrNW_004955450:7,060,823...7,082,169
JBrowse link
G Kif2c kinesin family member 2C disease_progression ISO RGD PMID:18506187 RGD:27372891 NCBI chrNW_004955464:13,453,637...13,475,447
Ensembl chrNW_004955464:13,453,217...13,475,322
JBrowse link
G Kif7 kinesin family member 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,555,959...15,570,925
Ensembl chrNW_004955416:15,555,933...15,570,985
JBrowse link
G Klf13 KLF transcription factor 13 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:30,087,705...30,137,437 JBrowse link
G Klhl25 kelch like family member 25 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:18,965,966...18,991,099 JBrowse link
G Knl1 kinetochore scaffold 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,498,983...7,561,620
Ensembl chrNW_004955416:7,500,415...7,562,273
JBrowse link
G Knstrn kinetochore localized astrin (SPAG5) binding protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,311,483...7,322,272
Ensembl chrNW_004955416:7,311,627...7,321,553
JBrowse link
G Kras KRAS proto-oncogene, GTPase disease_progression ISO DNA:missense mutations:cds:p.GLY12ASP,GLY12Val,GLY13ALA,GLY13ASP(human) RGD PMID:22971512 RGD:14398748 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G L1cam L1 cell adhesion molecule severity ISO protein:increased expression:colon (human) RGD PMID:17873897 RGD:6483011 NCBI chrNW_004955580:548,442...561,580
Ensembl chrNW_004955580:549,368...561,486
JBrowse link
G Lactb lactamase beta ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:12,140,049...12,155,600
Ensembl chrNW_004955450:12,140,404...12,155,898
JBrowse link
G Larp6 La ribonucleoprotein 6, translational regulator ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:6,050,260...6,073,388
Ensembl chrNW_004955450:6,050,057...6,073,379
JBrowse link
G Lats2 large tumor suppressor kinase 2 treatment ISO Human cells in mouse model RGD PMID:32682784 RGD:153297782 NCBI chrNW_004955497:1,711,882...1,768,177
Ensembl chrNW_004955497:1,711,205...1,761,584
JBrowse link
G Lcmt2 leucine carboxyl methyltransferase 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,890,208...9,892,326 JBrowse link
G Lctl lactase like ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,127,151...9,139,836
Ensembl chrNW_004955450:9,127,174...9,139,211
JBrowse link
G Ldhal6b lactate dehydrogenase A like 6B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955439:4,954,208...4,956,660 JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,711,475...2,727,879
Ensembl chrNW_004955409:2,711,564...2,727,755
JBrowse link
G Lif LIF interleukin 6 family cytokine disease_progression ISO protein:increased expression:colon (human) RGD PMID:29899555 RGD:151356919 NCBI chrNW_004955455:4,489,515...4,505,439
Ensembl chrNW_004955455:4,489,421...4,497,940
JBrowse link
G Lig4 DNA ligase 4 ISO DNA, mRNA:hypermethylation, decreased expression RGD PMID:24282031 RGD:8694072 NCBI chrNW_004955404:3,606,077...3,615,193
Ensembl chrNW_004955404:3,606,077...3,615,193
JBrowse link
G Linc02915 long intergenic non-protein coding RNA 2915 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:6,178,585...6,178,974 JBrowse link
G Lingo1 leucine rich repeat and Ig domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,435,768...2,493,387
Ensembl chrNW_004955450:2,435,662...2,452,213
JBrowse link
G Lipc lipase C, hepatic type ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,947,869...16,062,449
Ensembl chrNW_004955450:15,948,187...16,048,766
JBrowse link
G Lman1l lectin, mannose binding 1 like ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,111,004...3,123,266
Ensembl chrNW_004955450:3,110,952...3,123,131
JBrowse link
G LOC102005653 cytochrome c oxidase subunit 5A, mitochondrial ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,036,387...3,049,121
Ensembl chrNW_004955450:3,035,815...3,051,507
JBrowse link
G LOC102010322 cytochrome P450 1A2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,165,107...3,171,894
Ensembl chrNW_004955450:3,165,106...3,171,942
JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial sexual_dimorphism
susceptibility
disease_progression
severity
ISO mRNA:splice variants:colorectal mucosa (human)
DNA:SNP:enhancer: (rs6013897) (human)
mRNA:increased expression:colon (human)
circRNA:increased expression:colorectum (human)
DNA:missense mutation:CDS: (rs6022990) (human)
mRNA:increased expression:colorectum (human)
DNA:SNP:intron: (rs2765934) (human)
DNA:SNP:intron: (rs4809960) (human)
mRNA:increased expression:colorectal mucosa (human)
RGD PMID:20398751 PMID:23463632 PMID:24213465 PMID:24562971 PMID:26260259 More... RGD:11526316 RGD:151361180 RGD:151361186 RGD:151665172 RGD:151665178 RGD:151665339 RGD:151665496 RGD:151665501 RGD:151665788 RGD:151708714 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G LOC102014960 cholesterol side-chain cleavage enzyme, mitochondrial ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,433,310...3,484,462
Ensembl chrNW_004955450:3,474,491...3,484,232
JBrowse link
G LOC102021597 alpha-1-antiproteinase S-like ISO protein:increased expression:serum RGD PMID:24886427 RGD:14695524 NCBI chrNW_004955438:17,920,200...17,929,105 JBrowse link
G LOC102023780 aromatase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,198,622...3,313,072
Ensembl chrNW_004955409:3,266,233...3,313,142
JBrowse link
G LOC102024459 arpin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,340,070...15,399,017 JBrowse link
G LOC102026028 cytochrome P450 2E1 ISO DNA:SNP:rs3813867 (human) RGD PMID:30489355 RGD:14700897 NCBI chrNW_004955507:6,293,162...6,303,255
Ensembl chrNW_004955507:6,289,576...6,304,193
JBrowse link
G Lox lysyl oxidase severity ISO RGD PMID:21282564 RGD:150520218 NCBI chrNW_004955521:178,290...193,926
Ensembl chrNW_004955521:185,792...193,926
JBrowse link
G Loxl1 lysyl oxidase like 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,715,109...3,734,641
Ensembl chrNW_004955450:3,715,421...3,735,219
JBrowse link
G Lpcat4 lysophosphatidylcholine acyltransferase 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:251,057...257,379
Ensembl chrNW_004955416:249,903...257,434
JBrowse link
G Lrcol1 leucine rich colipase like 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:429,882...431,693
Ensembl chrNW_004955482:429,882...431,693
JBrowse link
G Lrp1b LDL receptor related protein 1B exacerbates ISO DNA:mutations, haplotype:multiple: (human)
DNA:mutations, hpalotype:multiple (human)
RGD PMID:31693169 PMID:33836681 RGD:150429788 RGD:150429790 NCBI chrNW_004955440:7,048,527...8,475,566
Ensembl chrNW_004955440:7,050,135...8,475,122
JBrowse link
G Lrrc49 leucine rich repeat containing 49 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:5,903,345...6,030,279
Ensembl chrNW_004955450:5,903,266...6,030,279
JBrowse link
G Lrrc57 leucine rich repeat containing 57 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,230,362...9,237,799
Ensembl chrNW_004955416:9,230,362...9,237,799
JBrowse link
G Ltk leukocyte receptor tyrosine kinase ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955416:8,310,304...8,319,463 JBrowse link
G Lysmd2 LysM domain containing 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,862,478...2,874,017 JBrowse link
G Man2c1 mannosidase alpha class 2C member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,872,577...2,882,743
Ensembl chrNW_004955450:2,872,580...2,882,743
JBrowse link
G Map1a microtubule associated protein 1A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,052,964...10,073,318
Ensembl chrNW_004955416:10,053,010...10,071,421
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:9,181,851...9,205,277
Ensembl chrNW_004955450:9,181,851...9,239,648
JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 ISO mRNA:decreased expression:colorectum (human) RGD PMID:28000901 RGD:150530480 NCBI chrNW_004955495:4,695,239...4,718,380
Ensembl chrNW_004955495:4,695,768...4,722,098
JBrowse link
G Map2k4 mitogen-activated protein kinase kinase 4 severity
ameliorates
ISO protein:decreased expression:colorectum (human)
DNA:SNPs:promoter: -1304G>G, -1304T>G (rs3826392) (human)
RGD PMID:19610067 PMID:28423721 RGD:150429743 RGD:150429744 NCBI chrNW_004955467:5,188,036...5,295,570
Ensembl chrNW_004955467:5,187,356...5,307,692
JBrowse link
G Map2k5 mitogen-activated protein kinase kinase 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:8,207,577...8,458,258
Ensembl chrNW_004955450:8,203,569...8,458,258
JBrowse link
G Map3k8 mitogen-activated protein kinase kinase kinase 8 disease_progression ISO RGD PMID:23322277 PMID:29763718 RGD:151356994 RGD:151356995 NCBI chrNW_004955429:21,717,153...21,739,349
Ensembl chrNW_004955429:21,716,958...21,741,585
JBrowse link
G Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 exacerbates ISO protein:increased expression:colorectum (human)
mRNA:splicing variants:colorectum (human)
mRNA:increased expression:colorectum (human)
mRNA, protein:increased expression:colorectum, lymph node, blood serum (human)
RGD PMID:20077526 PMID:25602366 PMID:27882171 PMID:29138007 RGD:151347675 RGD:151347676 RGD:151347679 RGD:151347680 NCBI chrNW_004955470:7,334,050...7,470,751
Ensembl chrNW_004955470:7,333,351...7,470,751
JBrowse link
G Mapk14 mitogen-activated protein kinase 14 exacerbates ISO associated with experimental colitis RGD PMID:22828150 RGD:151665346 NCBI chrNW_004955437:3,836,331...3,884,083
Ensembl chrNW_004955437:3,838,232...3,884,083
JBrowse link
G Mapk6 mitogen-activated protein kinase 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,664,017...2,676,538
Ensembl chrNW_004955409:2,663,569...2,676,544
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 treatment ISO RGD PMID:25205654 RGD:13217416 NCBI chrNW_004955408:391,094...430,638
Ensembl chrNW_004955408:391,094...430,981
JBrowse link
G Mapkbp1 mitogen-activated protein kinase binding protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,570,684...8,626,748
Ensembl chrNW_004955416:8,571,044...8,626,748
JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO OMIM NCBI chrNW_004955408:32,928,519...33,265,049
Ensembl chrNW_004955408:32,928,519...33,264,727
JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member disease_progression ISO DNA:SNP:promoter: (rs9803935) (human)
mRNA,protein:increased expression:colon (human)
RGD PMID:29899555 PMID:32619164 RGD:151356738 RGD:151356919 NCBI chrNW_004955413:238,043...243,317 JBrowse link
G Megf11 multiple EGF like domains 11 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,355,134...9,634,747
Ensembl chrNW_004955450:9,355,060...9,632,119
JBrowse link
G Meis2 Meis homeobox 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:4,104,114...4,311,791
Ensembl chrNW_004955416:4,101,977...4,311,791
JBrowse link
G Mesd mesoderm development LRP chaperone ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,722,388...11,731,758
Ensembl chrNW_004955416:11,722,388...11,731,758
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,447,959...15,450,209 JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647
JBrowse link
G Mex3b mex-3 RNA binding family member B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:12,595,887...12,599,455
Ensembl chrNW_004955416:12,595,774...12,599,563
JBrowse link
G Mfap1 microfibril associated protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,263,729...10,273,403
Ensembl chrNW_004955416:10,263,729...10,274,188
JBrowse link
G Mfge8 milk fat globule EGF and factor V/VIII domain containing ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,092,263...16,103,097
Ensembl chrNW_004955416:16,091,684...16,103,768
JBrowse link
G Mga MAX dimerization protein MGA ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,416,236...8,566,371
Ensembl chrNW_004955416:8,471,134...8,563,842
JBrowse link
G Minar1 membrane integral NOTCH2 associated receptor 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:408,285...443,217
Ensembl chrNW_004955533:408,225...443,248
JBrowse link
G Mindy2 MINDY lysine 48 deubiquitinase 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,753,892...15,808,205
Ensembl chrNW_004955450:15,753,892...15,808,205
JBrowse link
G Mki67 marker of proliferation Ki-67 ameliorates ISO human cells in mouse model RGD PMID:34974791 RGD:153344629 NCBI chrNW_004955477:5,847,288...5,875,970 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:11726306 PMID:12919137 PMID:15849733 PMID:17895478 PMID:18931482 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mlh3 mutL homolog 3 sexual_dimorphism ISO DNA:SNP:3'utr: (rs108621)
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
RGD
OMIM
ClinVar
PMID:25741868 PMID:28492532 PMID:29516665 RGD:153344543 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Mmp2 matrix metallopeptidase 2 ISO human cells in mouse model RGD PMID:30789971 RGD:151893289 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp9 matrix metallopeptidase 9 treatment ISO mRNA:increased expresion:colorectum (human)
human cells in mouse model
RGD PMID:21839130 PMID:32682784 RGD:152985531 RGD:153297782 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Mns1 meiosis specific nuclear structural 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:17,819,812...17,852,157
Ensembl chrNW_004955450:17,819,929...17,851,762
JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:14,770...28,290
Ensembl chrNW_004955533:14,730...27,643
JBrowse link
G Mpi mannose phosphate isomerase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,061,079...3,071,202
Ensembl chrNW_004955450:3,061,079...3,067,585
JBrowse link
G Mrpl46 mitochondrial ribosomal protein L46 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,445,563...16,453,391
Ensembl chrNW_004955416:16,445,700...16,453,279
JBrowse link
G Mrps11 mitochondrial ribosomal protein S11 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:16,436,507...16,445,364
Ensembl chrNW_004955416:16,436,769...16,445,991
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar PMID:1710317 PMID:8700523 PMID:9259192 PMID:9774676 PMID:11208710 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar PMID:10537275 PMID:10612827 PMID:11470537 PMID:11900875 PMID:14520694 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Mtfmt mitochondrial methionyl-tRNA formyltransferase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,399,472...10,415,813
Ensembl chrNW_004955450:10,399,470...10,415,872
JBrowse link
G Mthfs methenyltetrahydrofolate synthetase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:720,255...756,893
Ensembl chrNW_004955533:720,353...756,893
JBrowse link
G Mtmr10 myotubularin related protein 10 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:29,758,048...29,803,701
Ensembl chrNW_004955416:29,758,048...29,805,029
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar PMID:11818965 PMID:12393807 PMID:12606733 PMID:12917422 PMID:15036665 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor ameliorates
severity
disease_progression
ISO protein:increased expression:colonic mucosa (human)
DNA:SNP:promoter: (rs4988453) (human)
mRNA:decreased expression:colon (human)
RGD PMID:20145615 PMID:24154872 PMID:24887488 PMID:30221070 RGD:150519917 RGD:150520171 RGD:150524331 RGD:150524336 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Myef2 myelin expression factor 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,713,495...5,747,528
Ensembl chrNW_004955409:5,714,124...5,747,140
JBrowse link
G Myo1b myosin IB ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955403:7,826,058...7,966,457
Ensembl chrNW_004955403:7,826,058...7,966,624
JBrowse link
G Myo1e myosin IE ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,421,843...15,551,680
Ensembl chrNW_004955450:15,456,580...15,551,584
JBrowse link
G Myo5a myosin VA ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012
JBrowse link
G Myo5c myosin VC ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,543,520...2,612,867
Ensembl chrNW_004955409:2,546,909...2,612,490
JBrowse link
G Myo9a myosin IXA ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:5,049,797...5,256,934
Ensembl chrNW_004955450:5,049,864...5,252,721
JBrowse link
G Myzap myocardial zonula adherens protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:16,664,673...16,730,769
Ensembl chrNW_004955450:16,664,315...16,730,770
JBrowse link
G Ndc80 NDC80 kinetochore complex component ISO mRNA:increased expression:colorectum RGD PMID:19878654 RGD:28867241 NCBI chrNW_004955402:7,692,009...7,728,876
Ensembl chrNW_004955402:7,691,937...7,729,690
JBrowse link
G Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,210,198...8,222,986
Ensembl chrNW_004955416:8,210,410...8,217,138
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:183,645...281,252
Ensembl chrNW_004955409:183,545...281,318
JBrowse link
G Neil1 nei like DNA glycosylase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,883,344...2,889,593
Ensembl chrNW_004955450:2,883,560...2,887,736
JBrowse link
G Neo1 neogenin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,191,168...4,324,997
Ensembl chrNW_004955450:4,191,168...4,375,896
JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor ISO DNA:loss of heterozygosity RGD PMID:24323642 RGD:150530506 NCBI chrNW_004955455:3,862,804...3,950,669
Ensembl chrNW_004955455:3,862,347...3,951,891
JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 treatment ISO ClinVar Annotator: match by term: Colorectal cancer RGD
ClinVar
PMID:22859375 PMID:29018201 RGD:10412740 NCBI chrNW_004955403:19,510,122...19,536,428
Ensembl chrNW_004955403:19,532,103...19,535,944
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO associated with Experimental Colitis RGD PMID:25727407 RGD:40902978 NCBI chrNW_004955496:5,842,734...5,950,995
Ensembl chrNW_004955496:5,842,600...5,927,885
JBrowse link
G Ngrn neugrin, neurite outgrowth associated ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,074,190...15,080,561
Ensembl chrNW_004955416:15,074,190...15,080,561
JBrowse link
G Nmb neuromedin B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,467,648...14,470,645
Ensembl chrNW_004955416:14,467,650...14,470,515
JBrowse link
G Noc4l nucleolar complex associated 4 homolog ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:626,347...631,998
Ensembl chrNW_004955482:626,347...631,998
JBrowse link
G Nop10 NOP10 ribonucleoprotein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:272,127...273,068
Ensembl chrNW_004955416:272,127...273,068
JBrowse link
G Nptn neuroplastin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,938,403...4,002,694
Ensembl chrNW_004955450:3,938,403...4,004,059
JBrowse link
G Nr2e3 nuclear receptor subfamily 2 group E member 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:5,281,707...5,286,260
Ensembl chrNW_004955450:5,281,707...5,286,260
JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Malignant Colorectal Neoplasm OMIM
ClinVar
PMID:17671181 PMID:22220252 PMID:23325582 PMID:23708912 PMID:24806883 More... NCBI chrNW_004955435:18,001,517...18,009,105
Ensembl chrNW_004955435:18,001,517...18,009,103
JBrowse link
G Nrg4 neuregulin 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,174,131...1,243,040
Ensembl chrNW_004955450:1,174,131...1,243,059
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 disease_progression ISO ClinVar Annotator: match by term: Familial colorectal cancer RGD
ClinVar
PMID:28492532 PMID:33593392 RGD:150520009 NCBI chrNW_004955416:16,652,931...17,018,188
Ensembl chrNW_004955416:16,652,791...17,018,188
JBrowse link
G Nuf2 NUF2 component of NDC80 kinetochore complex disease_progression ISO mRNA:increased expression:colorectum RGD PMID:19878654 PMID:24247253 RGD:28867241 RGD:28867244 NCBI chrNW_004955462:13,082,874...13,142,709
Ensembl chrNW_004955462:13,082,047...13,142,944
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,178,493...8,208,336
Ensembl chrNW_004955416:8,178,826...8,207,747
JBrowse link
G Nutm1 NUT midline carcinoma family member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:258,304...271,670
Ensembl chrNW_004955416:258,202...270,075
JBrowse link
G Oaz2 ornithine decarboxylase antizyme 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,790,629...10,803,411
Ensembl chrNW_004955450:10,790,829...10,802,276
JBrowse link
G Oip5 Opa interacting protein 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,168,143...8,178,459
Ensembl chrNW_004955416:8,168,319...8,179,408
JBrowse link
G Onecut1 one cut homeobox 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,181,364...2,214,636
Ensembl chrNW_004955409:2,181,346...2,207,888
JBrowse link
G Osbp oxysterol binding protein ISO RGD PMID:21999571 RGD:41404653 NCBI chrNW_004955511:4,057,514...4,076,039
Ensembl chrNW_004955511:4,057,514...4,076,046
JBrowse link
G Otud7a OTU deubiquitinase 7A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:30,244,875...30,427,829 JBrowse link
G P2rx2 purinergic receptor P2X 2 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:418,101...422,058
Ensembl chrNW_004955482:419,213...421,583
JBrowse link
G Pak6 p21 (RAC1) activated kinase 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,190,584...7,211,705
Ensembl chrNW_004955416:7,178,524...7,212,053
JBrowse link
G Palb2 partner and localizer of BRCA2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:17200668 PMID:17200671 PMID:17200672 PMID:17420451 PMID:19264984 More... NCBI chrNW_004955493:2,149,053...2,175,482
Ensembl chrNW_004955493:2,147,862...2,175,781
JBrowse link
G Paqr5 progestin and adipoQ receptor family member 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,089,521...7,108,981
Ensembl chrNW_004955450:7,089,521...7,108,489
JBrowse link
G Parp16 poly(ADP-ribose) polymerase family member 16 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,157,731...10,177,939
Ensembl chrNW_004955450:10,157,731...10,178,803
JBrowse link
G Parp6 poly(ADP-ribose) polymerase family member 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,863,713...4,900,509
Ensembl chrNW_004955450:4,863,564...4,901,847
JBrowse link
G Patl2 PAT1 homolog 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,169,711...11,180,557
Ensembl chrNW_004955416:11,170,829...11,180,247
JBrowse link
G Pbrm1 polybromo 1 severity ISO RGD PMID:28940253 RGD:150340627 NCBI chrNW_004955430:2,536,086...2,671,094
Ensembl chrNW_004955430:2,536,086...2,670,617
JBrowse link
G Pclaf PCNA clamp associated factor ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,072,778...11,082,687
Ensembl chrNW_004955450:11,072,786...11,082,687
JBrowse link
G Pdcd7 programmed cell death 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,294,184...10,307,234
Ensembl chrNW_004955450:10,294,276...10,306,367
JBrowse link
G Pde8a phosphodiesterase 8A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,063,117...14,204,297
Ensembl chrNW_004955416:14,063,123...14,125,220
JBrowse link
G Pdgfrl platelet derived growth factor receptor like ISO OMIM NCBI chrNW_004955552:2,041,267...2,077,971
Ensembl chrNW_004955552:2,041,267...2,077,972
JBrowse link
G Pdia3 protein disulfide isomerase family A member 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,197,957...10,221,104
Ensembl chrNW_004955416:10,198,099...10,220,792
JBrowse link
G Peak1 pseudopodium enriched atypical kinase 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:2,000,823...2,285,023
Ensembl chrNW_004955450:2,005,957...2,068,764
JBrowse link
G Peli1 pellino E3 ubiquitin protein ligase 1 susceptibility ISO DNA:SNP:exon: (rs329497) (human) RGD PMID:33470690 RGD:152995405 NCBI chrNW_004955424:20,212,077...20,263,761
Ensembl chrNW_004955424:20,211,600...20,263,761
JBrowse link
G Pex11a peroxisomal biogenesis factor 11 alpha ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,527,925...15,537,497
Ensembl chrNW_004955416:15,527,941...15,534,424
JBrowse link
G Pgam5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:23230001 PMID:25948378 PMID:28492532 PMID:30503519 NCBI chrNW_004955482:356,863...363,666
Ensembl chrNW_004955482:356,863...363,862
JBrowse link
G Pgbd4 piggyBac transposable element derived 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955496:1,861,479...1,869,071 JBrowse link
G Phgr1 proline, histidine and glycine rich 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,277,637...7,280,676 JBrowse link
G Phox2b paired like homeobox 2B ISO DNA:hypermethylation: : (human) RGD PMID:22552777 RGD:152025258 NCBI chrNW_004955443:5,935,975...5,938,747
Ensembl chrNW_004955443:5,935,975...5,938,747
JBrowse link
G Pias1 protein inhibitor of activated STAT 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,896,741...7,991,045
Ensembl chrNW_004955450:7,896,741...7,991,027
JBrowse link
G Pierce2 piercer of microtubule wall 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:523,414...530,630
Ensembl chrNW_004955409:523,414...526,391
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,722,570...10,729,852
Ensembl chrNW_004955450:10,722,016...10,727,565
JBrowse link
G Pigb phosphatidylinositol glycan anchor biosynthesis class B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:562,575...577,082
Ensembl chrNW_004955409:562,688...577,082
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer
OMIM
ClinVar
PMID:15016963 PMID:15254419 PMID:15520168 PMID:15647370 PMID:15805248 More... NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta ameliorates ISO human cells in mouse model RGD PMID:30789971 RGD:151893289 NCBI chrNW_004955501:251,829...381,255
Ensembl chrNW_004955501:259,645...379,909
JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta ISO DNA:hypermethylation RGD PMID:25366420 RGD:13432038 NCBI chrNW_004955486:3,813,923...3,837,563
Ensembl chrNW_004955486:3,813,923...3,838,119
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:22351933 PMID:25133428 PMID:25741868 PMID:28492532 NCBI chrNW_004955446:1,020,707...1,098,327
Ensembl chrNW_004955446:1,020,043...1,098,820
JBrowse link
G Pkm pyruvate kinase M1/2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,907,962...4,935,179
Ensembl chrNW_004955450:4,907,788...4,936,199
JBrowse link
G Pla2g4b phospholipase A2 group IVB ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,633,249...8,643,219
Ensembl chrNW_004955416:8,634,184...8,642,833
JBrowse link
G Pla2g4d phospholipase A2 group IVD ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,841,645...8,860,381
Ensembl chrNW_004955416:8,841,954...8,860,353
JBrowse link
G Pla2g4e phospholipase A2 group IVE ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,765,620...8,826,184
Ensembl chrNW_004955416:8,765,561...8,804,616
JBrowse link
G Pla2g4f phospholipase A2 group IVF ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,876,560...8,889,764
Ensembl chrNW_004955416:8,873,356...8,889,940
JBrowse link
G Plcb2 phospholipase C beta 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,221,326...7,240,743
Ensembl chrNW_004955416:7,218,417...7,240,739
JBrowse link
G Plcg1 phospholipase C gamma 1 ISO protein:increased expression:colorectum (human) RGD PMID:8275435 RGD:151356938 NCBI chrNW_004955445:15,787,496...15,823,859
Ensembl chrNW_004955445:15,787,496...15,823,859
JBrowse link
G Plekho2 pleckstrin homology domain containing O2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,692,305...10,714,031 JBrowse link
G Plin1 perilipin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,538,309...15,549,275
Ensembl chrNW_004955416:15,533,268...15,549,772
JBrowse link
G Pml PML nuclear body scaffold ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,654,854...3,692,057
Ensembl chrNW_004955450:3,656,498...3,692,406
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955403:9,021,488...9,100,442
Ensembl chrNW_004955403:9,022,078...9,100,442
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar PMID:21157497 PMID:24033266 PMID:25637381 PMID:25741868 PMID:25938944 More... NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit sexual_dimorphism
onset
exacerbates
severity
disease_progression
ISO DNA:missense mutation:CDS, exon 9:p.P286R (human)
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer with chromosomal instability, somatic | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: DLC1-related condition | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 3 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
DNA:mutations:multiple (human)
DNA:missense mutation:CDS:p.L424V (human)
DNA:missense mutation:CDS:multiple (human)
protein:decreased expression:colorectum (human)
RGD
ClinVar
OMIM
PMID:3432686 PMID:9536098 PMID:12424237 PMID:14760276 PMID:15285897 More... RGD:151347638 RGD:151347640 RGD:151347642 RGD:151347643 RGD:151347652 RGD:151356953 NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,773,005...15,788,736
Ensembl chrNW_004955416:15,773,473...15,788,651
JBrowse link
G Polr2m RNA polymerase II subunit M ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:16,633,975...16,642,085
Ensembl chrNW_004955450:16,635,458...16,641,974
JBrowse link
G Pot1 protection of telomeres 1 disease_progression ISO DNA:SNP: :rs116895242 (human)
DNA:SNP: :rs2975843 (human)
mRNA:increased expression:colorectum
RGD PMID:25194444 PMID:27459707 PMID:32586834 RGD:151356940 RGD:151356943 RGD:151356949 NCBI chrNW_004955479:6,140,599...6,230,512
Ensembl chrNW_004955479:6,140,501...6,209,031
JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,971,874...2,985,034
Ensembl chrNW_004955450:2,971,874...2,985,191
JBrowse link
G Ppib peptidylprolyl isomerase B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,241,279...11,246,628
Ensembl chrNW_004955450:11,241,279...11,249,056
JBrowse link
G Ppip5k1 diphosphoinositol pentakisphosphate kinase 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,074,239...10,113,268
Ensembl chrNW_004955416:10,074,239...10,109,523
JBrowse link
G Ppp1r14d protein phosphatase 1 regulatory inhibitor subunit 14D ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,681,138...7,693,644
Ensembl chrNW_004955416:7,681,138...7,693,644
JBrowse link
G Prdm1 PR/SET domain 1 ISO mRNA:increased expression:colorectum: RGD PMID:32393998 RGD:150530478 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056
JBrowse link
G Prdx2 peroxiredoxin 2 disease_progression ISO RGD PMID:23393224 RGD:153350137 NCBI chrNW_004955415:31,880,801...31,884,453
Ensembl chrNW_004955415:31,880,588...31,884,778
JBrowse link
G Prtg protogenin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:309,885...405,667
Ensembl chrNW_004955409:309,885...405,667
JBrowse link
G Psma4 proteasome 20S subunit alpha 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:925,070...932,237
Ensembl chrNW_004955450:925,542...936,653
JBrowse link
G Pstpip1 proline-serine-threonine phosphatase interacting protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,876,553...1,908,269
Ensembl chrNW_004955450:1,876,409...1,908,185
JBrowse link
G Pten phosphatase and tensin homolog exacerbates ISO protein:increased expression:colorectum, cytoplasm (human) RGD PMID:27661110 RGD:127285614 NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
JBrowse link
G Ptpn12 protein tyrosine phosphatase non-receptor type 12 ISO OMIM NCBI chrNW_004955410:7,556,283...7,599,170
Ensembl chrNW_004955410:7,557,103...7,599,139
JBrowse link
G Ptpn13 protein tyrosine phosphatase non-receptor type 13 susceptibility ISO DNA:missense mutations:cds:p.I1522M, p.Y2081D (human) RGD PMID:19672627 RGD:152176665 NCBI chrNW_004955474:2,988,109...3,140,520
Ensembl chrNW_004955474:2,988,639...3,140,513
JBrowse link
G Ptpn9 protein tyrosine phosphatase non-receptor type 9 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,725,755...2,796,390
Ensembl chrNW_004955450:2,725,755...2,796,390
JBrowse link
G Ptprj protein tyrosine phosphatase receptor type J susceptibility ISO ClinVar Annotator: match by term: Colorectal cancer
DNA:missense mutations:cds:p.R326Q, p.Q276P (human)
OMIM
ClinVar
RGD
PMID:12089527 PMID:19672627 PMID:25741868 PMID:33116287 RGD:152176665 NCBI chrNW_004955422:396,266...438,792
Ensembl chrNW_004955422:399,357...443,054
JBrowse link
G Ptprt protein tyrosine phosphatase receptor type T treatment ISO DNA:deletion: RGD PMID:30200630 RGD:150520195 NCBI chrNW_004955445:14,185,751...14,961,000
Ensembl chrNW_004955445:14,185,732...14,952,980
JBrowse link
G Pus1 pseudouridine synthase 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955482:749,265...756,964
Ensembl chrNW_004955482:748,394...756,747
JBrowse link
G Pxmp2 peroxisomal membrane protein 2 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:23230001 PMID:25948378 PMID:28492532 PMID:30503519 NCBI chrNW_004955482:366,613...373,339
Ensembl chrNW_004955482:366,874...373,125
JBrowse link
G Pygo1 pygopus family PHD finger 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:446,548...459,139 JBrowse link
G Rab11a RAB11A, member RAS oncogene family ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,638,761...9,656,291
Ensembl chrNW_004955450:9,638,761...9,656,603
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:588,725...621,874
Ensembl chrNW_004955409:588,254...621,874
JBrowse link
G Rab8b RAB8B, member RAS oncogene family ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:12,026,784...12,095,332
Ensembl chrNW_004955450:12,026,784...12,095,422
JBrowse link
G Rac1 Rac family small GTPase 1 ameliorates
disease_progression
ISO human cell line in a mouse model
mRNA:alternative form
RGD PMID:17597401 PMID:24833563 PMID:29884911 RGD:13432050 RGD:13432052 RGD:152998911 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rad51 RAD51 recombinase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,566,715...7,590,628
Ensembl chrNW_004955416:7,566,686...7,590,628
JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Malignant Colorectal Neoplasm ClinVar PMID:20665887 PMID:21822267 PMID:22986143 PMID:24130102 PMID:24240112 More... NCBI chrNW_004955481:9,795,102...9,810,426
Ensembl chrNW_004955481:9,795,102...9,810,426
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein onset
susceptibility
ISO DNA:SNP,haplotypes:3'utr: (rs1051669) (human)
DNA:SNPs:3'utr: (rs7963551, rs11226) (human)
RGD PMID:26735576 PMID:29245274 RGD:151361161 RGD:151361212 NCBI chrNW_004955454:6,206,195...6,227,859
Ensembl chrNW_004955454:6,215,129...6,231,726
JBrowse link
G Rad54b RAD54 homolog B ISO OMIM NCBI chrNW_004955417:10,598,295...10,685,999
Ensembl chrNW_004955417:10,597,450...10,686,005
JBrowse link
G Ramac RNA guanine-7 methyltransferase activating subunit ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,686,997...13,691,792 JBrowse link
G Ramp2 receptor activity modifying protein 2 ISO mRNA:increased expression:colorectum (human) RGD PMID:21839130 RGD:152985531 NCBI chrNW_004955451:16,584,742...16,586,093 JBrowse link
G Ramp3 receptor activity modifying protein 3 ISO mRNA:increased expression:colorectum (human) RGD PMID:21839130 RGD:152985531 NCBI chrNW_004955456:7,159,845...7,168,718
Ensembl chrNW_004955456:7,159,845...7,168,792
JBrowse link
G Rasgrf1 Ras protein specific guanine nucleotide releasing factor 1 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955533:69,736...167,626
Ensembl chrNW_004955533:70,897...167,460
JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:5,494,030...5,561,608
Ensembl chrNW_004955416:5,494,030...5,561,614
JBrowse link
G Rasl12 RAS like family 12 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,352,574...10,363,906
Ensembl chrNW_004955450:10,352,574...10,363,906
JBrowse link
G Rbfox1 RNA binding fox-1 homolog 1 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955442:10,345,261...10,694,602
Ensembl chrNW_004955442:10,344,365...10,908,434
JBrowse link
G Rbm10 RNA binding motif protein 10 onset ISO RGD PMID:33194656 RGD:151356979 NCBI chrNW_004955516:904,852...934,313
Ensembl chrNW_004955516:904,062...934,313
JBrowse link
G Rbpms2 RNA binding protein, mRNA processing factor 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,746,708...10,770,540
Ensembl chrNW_004955450:10,763,540...10,770,610
JBrowse link
G Rcn2 reticulocalbin 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,838,836...1,854,045
Ensembl chrNW_004955450:1,838,734...1,857,254
JBrowse link
G Rec114 REC114 meiotic recombination protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,002,734...4,076,292
Ensembl chrNW_004955450:4,002,753...4,076,309
JBrowse link
G Rel REL proto-oncogene, NF-kB subunit susceptibility ISO associated with Experimental Colitis RGD PMID:25727407 RGD:40902978 NCBI chrNW_004955424:22,909,035...22,939,651
Ensembl chrNW_004955424:22,911,541...22,939,651
JBrowse link
G Ret ret proto-oncogene ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955546:1,221,995...1,252,147
Ensembl chrNW_004955546:1,221,995...1,253,946
JBrowse link
G Rfx7 regulatory factor X7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:59,535...121,157
Ensembl chrNW_004955409:59,536...118,315
JBrowse link
G Rhcg Rh family C glycoprotein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,639,425...15,657,708
Ensembl chrNW_004955416:15,639,551...15,654,293
JBrowse link
G Rhoa ras homolog family member A ISO RGD PMID:17597401 RGD:13432052 NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
JBrowse link
G Rhov ras homolog family member V ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,741,762...7,743,816
Ensembl chrNW_004955416:7,738,526...7,744,440
JBrowse link
G Rictor RPTOR independent companion of MTOR complex 2 disease_progression ISO associated with Lymphatic Metastasis; protein:increased expression:colon (human) RGD PMID:27063170 RGD:152995519 NCBI chrNW_004955426:23,468,112...23,582,587
Ensembl chrNW_004955426:23,468,112...23,582,587
JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,862,510...15,873,261
Ensembl chrNW_004955416:15,862,426...15,873,327
JBrowse link
G Rmdn3 regulator of microtubule dynamics 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,591,049...7,610,164
Ensembl chrNW_004955416:7,591,049...7,610,147
JBrowse link
G Rmi1 RecQ mediated genome instability 1 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955432:3,215,372...3,241,840
Ensembl chrNW_004955432:3,215,769...3,217,622
JBrowse link
G Rnf111 ring finger protein 111 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,590,053...15,651,344
Ensembl chrNW_004955450:15,587,270...15,624,576
JBrowse link
G Rnf43 ring finger protein 43 ameliorates
treatment
onset
exacerbates
ISO DNA:silent mutation, missense mutation:exon 3:p.R117R, p.R117H (rs2257205) (human)
associated with Neoplasm Metastasis;DNA:mutations:multiple (human)
mRNA, protein:decreased expression:colorectum (human)
protein:decreased expression:colorectum (mouse)
DNA:mutations:multiple: (human)
RGD PMID:22202234 PMID:22977472 PMID:23267878 PMID:25344691 PMID:27661107 More... RGD:151356979 RGD:151361145 RGD:151361209 RGD:151361218 RGD:151361223 RGD:151361224 RGD:151361228 RGD:151665113 RGD:151665114 RGD:151665115 RGD:151665116 NCBI chrNW_004955451:4,604,985...4,680,762
Ensembl chrNW_004955451:4,604,985...4,680,762
JBrowse link
G Rora RAR related orphan receptor A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:14,262,199...14,434,611
Ensembl chrNW_004955450:14,262,190...14,425,233
JBrowse link
G Rpap1 RNA polymerase II associated protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,322,239...8,348,331
Ensembl chrNW_004955416:8,317,814...8,349,007
JBrowse link
G Rpl4 ribosomal protein L4 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955450:9,170,372...9,175,224
Ensembl chrNW_004955450:9,169,648...9,176,604
JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,053,378...7,055,858
Ensembl chrNW_004955450:7,053,378...7,055,858
JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,026,257...3,027,683
Ensembl chrNW_004955450:3,026,502...3,027,065
JBrowse link
G Rps17 ribosomal protein S17 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,039,596...14,042,908
Ensembl chrNW_004955416:14,039,596...14,042,908
JBrowse link
G Rps27l ribosomal protein S27 like ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:12,122,948...12,126,167
Ensembl chrNW_004955450:12,122,921...12,128,101
JBrowse link
G Rpusd2 RNA pseudouridine synthase domain containing 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,482,226...7,485,654
Ensembl chrNW_004955416:7,482,269...7,487,840
JBrowse link
G Rsl24d1 ribosomal L24 domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:622,561...632,776
Ensembl chrNW_004955409:622,561...632,776
JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,237,439...8,293,802
Ensembl chrNW_004955416:8,237,439...8,293,802
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO RGD PMID:25925209 RGD:126779569 NCBI chrNW_004955437:10,598,145...10,885,858
Ensembl chrNW_004955437:10,598,145...10,800,560
JBrowse link
G Runx3 RUNX family transcription factor 3 ISO RGD PMID:25925209 RGD:126779569 NCBI chrNW_004955452:4,580,444...4,606,820
Ensembl chrNW_004955452:4,579,331...4,636,884
JBrowse link
G Ryr3 ryanodine receptor 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:712,506...1,260,111
Ensembl chrNW_004955416:713,373...1,259,885
JBrowse link
G Saxo2 stabilizer of axonemal microtubules 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:12,789,683...12,811,159
Ensembl chrNW_004955416:12,789,776...12,810,019
JBrowse link
G Scamp2 secretory carrier membrane protein 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,070,944...3,095,168
Ensembl chrNW_004955450:3,070,683...3,095,168
JBrowse link
G Scamp5 secretory carrier membrane protein 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,986,522...3,009,655
Ensembl chrNW_004955450:2,986,468...3,009,774
JBrowse link
G Scaper S-phase cyclin A associated protein in the ER ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,479,983...1,821,681
Ensembl chrNW_004955450:1,480,287...1,812,082
JBrowse link
G Scg3 secretogranin III ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,876,355...2,907,363
Ensembl chrNW_004955409:2,875,017...2,907,363
JBrowse link
G Scg5 secretogranin V ISO ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer
ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:26947005 PMID:28492532 More... NCBI chrNW_004955416:1,867,848...1,914,505
Ensembl chrNW_004955416:1,866,997...1,914,640
JBrowse link
G Sec11a SEC11 homolog A, signal peptidase complex subunit ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955416:14,421,985...14,459,233
Ensembl chrNW_004955416:14,421,988...14,459,233
JBrowse link
G Secisbp2l SECIS binding protein 2 like ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,926,330...4,974,889
Ensembl chrNW_004955409:4,926,942...4,975,099
JBrowse link
G Sema4a semaphorin 4A ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:25637381 PMID:25741868 PMID:28492532 NCBI chrNW_004955545:2,316,402...2,341,873
Ensembl chrNW_004955545:2,316,390...2,342,233
JBrowse link
G Sema4b semaphorin 4B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,107,258...15,143,338
Ensembl chrNW_004955416:15,108,175...15,130,746
JBrowse link
G Sema6d semaphorin 6D ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:6,086,178...6,143,702
Ensembl chrNW_004955409:6,086,113...6,143,713
JBrowse link
G Sema7a semaphorin 7A (JohnMiltonHagen blood group) ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,401,732...3,424,547
Ensembl chrNW_004955450:3,401,777...3,423,363
JBrowse link
G Senp8 SUMO peptidase family member, NEDD8 specific ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:4,978,767...5,001,678
Ensembl chrNW_004955450:4,978,767...5,001,678
JBrowse link
G Septin9 septin 9 ISO DNA:hypermethylation:urine: RGD PMID:33504902 RGD:153344542 NCBI chrNW_004955506:4,943,108...5,033,088
Ensembl chrNW_004955506:4,942,056...5,090,441
JBrowse link
G Serf2 small EDRK-rich factor 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,251,533...10,252,429 JBrowse link
G Serinc4 serine incorporator 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,255,269...10,257,996 JBrowse link
G Serpinf1 serpin family F member 1 disease_progression ISO RGD PMID:23393224 RGD:153350137 NCBI chrNW_004955481:1,414,930...1,426,436
Ensembl chrNW_004955481:1,414,930...1,426,241
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase exacerbates ISO mRNA:decreased expression:colon (human)
DNA:frameshift mutation:exon 3:c.4219delA (human)
RGD PMID:24925220 PMID:26069251 PMID:28825595 RGD:150429636 RGD:150429645 RGD:150429646 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760
JBrowse link
G Sgk2 serum/glucocorticoid regulated kinase 2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955445:13,581,145...13,625,320
Ensembl chrNW_004955445:13,581,145...13,625,320
JBrowse link
G Sh2b3 SH2B adaptor protein 3 susceptibility ISO DNA:missense mutation:CDS:p.W263R (rs3184504) (human) RGD PMID:26553438 RGD:11041896 NCBI chrNW_004955482:8,079,905...8,100,791
Ensembl chrNW_004955482:8,096,160...8,097,765
JBrowse link
G Sh2d7 SH2 domain containing 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:650,339...660,567
Ensembl chrNW_004955450:650,339...660,567
JBrowse link
G Sh3gl3 SH3 domain containing GRB2 like 3, endophilin A3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,151,288...13,297,878
Ensembl chrNW_004955416:13,150,021...13,297,878
JBrowse link
G Shc4 SHC adaptor protein 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,000,209...5,111,352
Ensembl chrNW_004955409:5,046,900...5,115,621
JBrowse link
G Shf Src homology 2 domain containing F ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,219,295...8,227,877
Ensembl chrNW_004955409:8,201,663...8,227,921
JBrowse link
G Shh sonic hedgehog signaling molecule ISO RGD PMID:22901214 RGD:150520174 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,804,551...2,870,450
Ensembl chrNW_004955450:2,808,130...2,870,450
JBrowse link
G Skic8 SKI8 subunit of superkiller complex ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:771,646...788,895
Ensembl chrNW_004955450:770,750...789,485
JBrowse link
G Skor1 SKI family transcriptional corepressor 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:8,184,843...8,195,626
Ensembl chrNW_004955450:8,185,523...8,193,777
JBrowse link
G Slc12a1 solute carrier family 12 member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,597,033...5,680,009
Ensembl chrNW_004955409:5,597,033...5,680,009
JBrowse link
G Slc12a6 solute carrier family 12 member 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:277,215...375,812
Ensembl chrNW_004955416:276,987...375,812
JBrowse link
G Slc24a1 solute carrier family 24 member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,850,170...9,881,172
Ensembl chrNW_004955450:9,856,718...9,881,172
JBrowse link
G Slc24a5 solute carrier family 24 member 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:5,747,624...5,768,122
Ensembl chrNW_004955409:5,747,624...5,768,122
JBrowse link
G Slc27a2 solute carrier family 27 member 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:4,077,685...4,112,828
Ensembl chrNW_004955409:4,077,149...4,112,828
JBrowse link
G Slc28a1 solute carrier family 28 member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,226,411...14,267,962
Ensembl chrNW_004955416:14,226,278...14,268,350
JBrowse link
G Slc28a2 solute carrier family 28 member 2 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:28492532 NCBI chrNW_004955409:8,145,723...8,175,256
Ensembl chrNW_004955409:8,144,304...8,175,360
JBrowse link
G Slc30a4 solute carrier family 30 member 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:7,963,454...7,991,600
Ensembl chrNW_004955409:7,963,454...7,995,027
JBrowse link
G Slc51b SLC51 subunit beta ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,365,554...10,374,209
Ensembl chrNW_004955450:10,365,554...10,374,209
JBrowse link
G Slc7a5 solute carrier family 7 member 5 severity ISO RGD PMID:29344181 RGD:151361284 NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310
JBrowse link
G Slc9a9 solute carrier family 9 member A9 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955508:2,060,078...2,671,792
Ensembl chrNW_004955508:2,090,609...2,670,240
JBrowse link
G Sltm SAFB like transcription modulator ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:15,691,472...15,748,123
Ensembl chrNW_004955450:15,691,463...15,736,709
JBrowse link
G Smad3 SMAD family member 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Smad4 SMAD family member 4 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Smad6 SMAD family member 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,005,332...9,070,790 JBrowse link
G Smad7 SMAD family member 7 susceptibility ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 3 OMIM
ClinVar
PMID:17934461 PMID:18372901 PMID:18372905 PMID:25741868 NCBI chrNW_004955402:34,028,184...34,058,949
Ensembl chrNW_004955402:34,028,063...34,058,291
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 ISO RNA:increased expression:colorectum (human) RGD PMID:32606978 RGD:151347862 NCBI chrNW_004955420:24,594,057...24,729,108
Ensembl chrNW_004955420:24,593,830...24,729,108
JBrowse link
G Smc2 structural maintenance of chromosomes 2 exacerbates ISO mRNA:decreased expression:colorectum (human) RGD PMID:31357676 RGD:151356956 NCBI chrNW_004955419:22,245,843...22,294,508
Ensembl chrNW_004955419:22,245,843...22,294,508
JBrowse link
G Smo smoothened, frizzled class receptor ISO RGD PMID:22901214 RGD:150520174 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Snai1 snail family transcriptional repressor 1 treatment ISO Human cells in mouse model RGD PMID:32682784 RGD:153297782 NCBI chrNW_004955445:8,232,084...8,237,893
Ensembl chrNW_004955445:8,231,924...8,237,996
JBrowse link
G Snap23 synaptosome associated protein 23 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,191,123...9,225,103
Ensembl chrNW_004955416:9,190,623...9,225,103
JBrowse link
G Snapc5 small nuclear RNA activating complex polypeptide 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,176,462...9,197,592
Ensembl chrNW_004955450:9,176,462...9,197,592
JBrowse link
G Snupn snurportin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,701,496...2,720,971
Ensembl chrNW_004955450:2,691,617...2,722,150
JBrowse link
G Snx1 sorting nexin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,266,712...11,306,014
Ensembl chrNW_004955450:11,266,712...11,305,930
JBrowse link
G Snx22 sorting nexin 22 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,246,817...11,248,870
Ensembl chrNW_004955450:11,246,817...11,248,874
JBrowse link
G Snx33 sorting nexin 33 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:2,669,993...2,682,503
Ensembl chrNW_004955450:2,669,993...2,682,503
JBrowse link
G Socs1 suppressor of cytokine signaling 1 disease_progression ISO RGD PMID:27133036 RGD:150573688 NCBI chrNW_004955442:7,321,337...7,323,109
Ensembl chrNW_004955442:7,321,337...7,323,109
JBrowse link
G Sord sorbitol dehydrogenase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,305,819...8,333,733
Ensembl chrNW_004955409:8,303,602...8,333,869
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563
JBrowse link
G Spesp1 sperm equatorial segment protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:7,355,144...7,370,413
Ensembl chrNW_004955450:7,355,082...7,370,735
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,084,448...11,168,478
Ensembl chrNW_004955416:11,086,176...11,168,332
JBrowse link
G Spg21 SPG21 abhydrolase domain containing, maspardin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,424,394...10,455,680
Ensembl chrNW_004955450:10,424,394...10,457,804
JBrowse link
G Spint1 serine peptidase inhibitor, Kunitz type 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,715,536...7,728,759
Ensembl chrNW_004955416:7,715,536...7,729,158
JBrowse link
G Spop speckle type BTB/POZ protein exacerbates ISO DNA:hypermethylation:promoter (human)
mRNA:decreased expression:colorectum (human)
protein:decreased expression:colorectum (human)
RGD PMID:26022775 PMID:28032859 PMID:30171794 RGD:11056110 RGD:153298921 RGD:153298926 NCBI chrNW_004955451:11,897,642...11,970,269
Ensembl chrNW_004955451:11,897,592...11,970,269
JBrowse link
G Sppl2a signal peptide peptidase like 2A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,642,113...3,670,779
Ensembl chrNW_004955409:3,645,555...3,670,551
JBrowse link
G Spred1 sprouty related EVH1 domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:5,288,779...5,376,861
Ensembl chrNW_004955416:5,288,262...5,377,036
JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,643,177...8,684,469 JBrowse link
G Sqor sulfide quinone oxidoreductase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:7,831,698...7,857,249
Ensembl chrNW_004955409:7,831,636...7,877,562
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO OMIM NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Srp14 signal recognition particle 14 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,006,240...7,009,569
Ensembl chrNW_004955416:7,006,240...7,009,965
JBrowse link
G Stard5 StAR related lipid transfer domain containing 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,989,572...12,000,226
Ensembl chrNW_004955416:11,989,572...12,000,226
JBrowse link
G Stard9 StAR related lipid transfer domain containing 9 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,276,026...9,393,842 JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO OMIM:114500 | OMIM:608812 | OMIM:611469 | OMIM:612229 | OMIM:612230 | OMIM:612231 | OMIM:612232 | OMIM:612589 | OMIM:612590 | OMIM:612591 | OMIM:612592 | OMIM:615083 MouseDO NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Stim1 stromal interaction molecule 1 disease_progression
susceptibility
ISO mRNA,protein:increased expression:colorectum (human)
DNA:SNPs:intron, 3'utr: (rs3794050,rs7934581,rs3750996) (human)
RGD PMID:25381814 PMID:25531324 PMID:33470690 RGD:152995364 RGD:152995402 RGD:152995405 NCBI chrNW_004955414:19,652,990...19,849,353
Ensembl chrNW_004955414:19,652,990...19,847,964
JBrowse link
G Stk33 serine/threonine kinase 33 ISO RGD PMID:30760631 RGD:405096660 NCBI chrNW_004955414:24,170,810...24,254,489
Ensembl chrNW_004955414:24,170,625...24,261,376
JBrowse link
G Stoml1 stomatin like 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,694,197...3,701,812
Ensembl chrNW_004955450:3,693,864...3,701,291
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600
JBrowse link
G Strc stereocilin ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,139,420...10,141,906 JBrowse link
G Tbc1d21 TBC1 domain family member 21 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,753,758...3,762,727
Ensembl chrNW_004955450:3,753,758...3,763,326
JBrowse link
G Tbc1d2b TBC1 domain family member 2B ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:579,651...642,237
Ensembl chrNW_004955450:582,223...641,876
JBrowse link
G Tbx3 T-box transcription factor 3 disease_progression ISO mRNA,protein:increased expression:colorectum (human) RGD PMID:25628943 RGD:151361126 NCBI chrNW_004955455:15,988,153...16,000,156
Ensembl chrNW_004955455:15,988,663...16,000,063
JBrowse link
G Tcerg1 transcription elongation regulator 1 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar NCBI chrNW_004955415:7,597,557...7,665,215
Ensembl chrNW_004955415:7,597,557...7,663,207
JBrowse link
G Tcf12 transcription factor 12 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:16,979,990...17,375,264
Ensembl chrNW_004955450:16,979,414...17,376,055
JBrowse link
G Tcf3 transcription factor 3 disease_progression ISO DNA:SNP:3' utr:rs1052918 (human)
DNA, mRNA:hypomethylation, increased expression
RGD PMID:19828471 PMID:23940558 PMID:24454819 PMID:25375219 RGD:13432058 RGD:13432061 RGD:13432062 RGD:13432063 NCBI chrNW_004955495:6,337,311...6,365,193
Ensembl chrNW_004955495:6,337,870...6,367,487
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO DNA:mutations:multiple (human) RGD PMID:25617745 RGD:13450926 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
G Terb2 telomere repeat binding bouquet formation protein 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,352,685...8,371,576
Ensembl chrNW_004955409:8,352,685...8,371,529
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO associated with Neoplasm Metastasis; mRNA:decreased expression:colorectum (human)
mRNA, protein:increased expression:colorectum, CD4 positive T cells (human)
mRNA:increased expression: Blood, peripheral blood mononuclear cells (human)
mRNA:decreased expression:colon (human)
RGD PMID:26816554 PMID:29875879 PMID:30013992 PMID:30713804 RGD:150429613 RGD:150429655 RGD:150429665 RGD:150429690 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
G Tex9 testis expressed 9 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:17,885,148...17,942,136
Ensembl chrNW_004955450:17,884,699...17,942,761
JBrowse link
G Tgfb1 transforming growth factor beta 1 disease_progression ISO protein:decreased expression:plasma RGD PMID:12778073 PMID:15057430 RGD:13432086 RGD:13432088 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb2 transforming growth factor beta 2 disease_progression
treatment
ISO RGD PMID:15057430 PMID:19661324 RGD:13432081 RGD:13432086 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tgfb3 transforming growth factor beta 3 treatment ISO RGD PMID:12778073 RGD:13432088 NCBI chrNW_004955438:33,129...55,180
Ensembl chrNW_004955438:29,415...55,180
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO sporadic colorectal cancer;DNA:deletion:exon: (rs11466445) (human) RGD PMID:24880985 RGD:155630638 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:9590282 PMID:25741868 PMID:28492532 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Tgm5 transglutaminase 5 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,808,903...9,842,784
Ensembl chrNW_004955416:9,805,033...9,842,798
JBrowse link
G Tgm7 transglutaminase 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,847,645...9,870,627
Ensembl chrNW_004955416:9,848,874...9,862,166
JBrowse link
G Thbs1 thrombospondin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:6,490,034...6,506,419
Ensembl chrNW_004955416:6,489,451...6,506,419
JBrowse link
G Thsd4 thrombospondin type 1 domain containing 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:5,296,670...5,827,252
Ensembl chrNW_004955450:5,301,765...5,479,638
JBrowse link
G Ticrr TOPBP1 interacting checkpoint and replication regulator ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,572,789...15,615,556
Ensembl chrNW_004955416:15,572,331...15,615,603
JBrowse link
G Tipin TIMELESS interacting protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,259,838...9,279,479
Ensembl chrNW_004955450:9,262,717...9,279,401
JBrowse link
G Tle3 TLE family member 3, transcriptional corepressor ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:6,604,915...6,645,305
Ensembl chrNW_004955450:6,603,879...6,645,602
JBrowse link
G Tln2 talin 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:12,391,049...12,740,232
Ensembl chrNW_004955450:12,394,377...12,728,925
JBrowse link
G Tlnrd1 talin rod domain containing 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:11,739,879...11,742,381
Ensembl chrNW_004955416:11,740,758...11,741,825
JBrowse link
G Tlr2 toll like receptor 2 susceptibility ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 OMIM
ClinVar
PMID:25741868 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258
JBrowse link
G Tm6sf1 transmembrane 6 superfamily member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,561,872...13,584,238
Ensembl chrNW_004955416:13,561,880...13,584,454
JBrowse link
G Tmc3 transmembrane channel like 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:12,005,190...12,040,095
Ensembl chrNW_004955416:12,004,943...12,032,870
JBrowse link
G Tmco5a transmembrane and coiled-coil domains 5A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:5,030,720...5,045,420
Ensembl chrNW_004955416:5,030,657...5,045,691
JBrowse link
G Tmed3 transmembrane p24 trafficking protein 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:327,044...335,030 JBrowse link
G Tmem266 transmembrane protein 266 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,282,535...1,384,088
Ensembl chrNW_004955450:1,332,928...1,384,110
JBrowse link
G Tmem62 transmembrane protein 62 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,731,871...9,772,738
Ensembl chrNW_004955416:9,737,616...9,772,738
JBrowse link
G Tmem87a transmembrane protein 87A ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,938,758...8,990,800
Ensembl chrNW_004955416:8,937,110...8,990,800
JBrowse link
G Tmod2 tropomodulin 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:2,801,173...2,842,717
Ensembl chrNW_004955409:2,808,543...2,842,844
JBrowse link
G Tnfaip3 TNF alpha induced protein 3 severity ISO DNA:SNP:3'utr: (rs6920220) (human) RGD PMID:22843550 RGD:151347611 NCBI chrNW_004955436:21,566,591...21,581,551
Ensembl chrNW_004955436:21,566,423...21,578,469
JBrowse link
G Tnfaip8l3 TNF alpha induced protein 8 like 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,427,332...3,451,809 JBrowse link
G Tnfsf9 TNF superfamily member 9 ISO protein:decreased expression:colon, rectum, mucosa (human) RGD PMID:16596186 RGD:2317353 NCBI chrNW_004955495:3,101,965...3,107,552 JBrowse link
G Tnik TRAF2 and NCK interacting kinase ameliorates
exacerbates
ISO protein:increased expression:colorectum (human) RGD PMID:26499327 PMID:27562646 RGD:11530847 RGD:151347682 NCBI chrNW_004955420:1,166,340...1,542,712
Ensembl chrNW_004955420:1,166,340...1,542,326
JBrowse link
G Tp53 tumor protein p53 treatment
no_association
ISO ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 1 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 12q24 | ClinVar Annotator: match by term: Colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 | ClinVar Annotator: match by term: Familial colorectal cancer | ClinVar Annotator: match by term: Malignant Colorectal Neoplasm
DNA:missense mutation: :p.P72R (human)
RGD
ClinVar
OMIM
PMID:1349175 PMID:1565143 PMID:1565144 PMID:1591732 PMID:1631137 More... RGD:14995449 RGD:14995500 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,962,736...10,035,433
Ensembl chrNW_004955416:9,962,897...10,035,278
JBrowse link
G Tp73 tumor protein p73 exacerbates
susceptibility
ISO DNA:SNP:intron:g.3636226T>C (rs747828) (human)
DNA:hypermethylation:promoter: (human)
DNA:deletion:intron:IVS1-489_-417del (human)
DNA:SNPs:exon 2:4G>A, 14C>T (rs2273953, rs1801173) (human)
RGD PMID:14732927 PMID:21672615 PMID:29945573 PMID:30420492 PMID:31090204 RGD:151347580 RGD:151347581 RGD:151347587 RGD:151347588 RGD:151347590 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982
JBrowse link
G Tpm1 tropomyosin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:12,197,241...12,223,372
Ensembl chrNW_004955450:12,194,755...12,224,011
JBrowse link
G Trim69 tripartite motif containing 69 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:8,376,449...8,394,651
Ensembl chrNW_004955409:8,376,370...8,394,540
JBrowse link
G Trip4 thyroid hormone receptor interactor 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,005,842...11,088,192
Ensembl chrNW_004955450:11,005,849...11,088,192
JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:22561515 PMID:25992589 PMID:26493165 PMID:28492532 NCBI chrNW_004955416:29,846,374...29,880,922
Ensembl chrNW_004955416:29,814,077...29,939,344
JBrowse link
G Trpm7 transient receptor potential cation channel subfamily M member 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,690,722...3,787,139
Ensembl chrNW_004955409:3,691,039...3,785,908
JBrowse link
G Trpv3 transient receptor potential cation channel subfamily V member 3 ISO DNA:snp:exon:c.558A>C rs11078458 (human) RGD PMID:20042636 RGD:7183081 NCBI chrNW_004955467:13,246,099...13,276,741
Ensembl chrNW_004955467:13,248,599...13,276,718
JBrowse link
G Tspan3 tetraspanin 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,916,067...1,937,364
Ensembl chrNW_004955450:1,916,067...1,937,845
JBrowse link
G Ttbk2 tau tubulin kinase 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,412,297...9,518,561
Ensembl chrNW_004955416:9,412,297...9,559,655
JBrowse link
G Ttr transthyretin ISO protein:decreased expression:blood serum (human) RGD PMID:21136704 RGD:151664608 NCBI chrNW_004955402:18,921,235...18,927,976
Ensembl chrNW_004955402:18,921,274...18,928,108
JBrowse link
G Tubgcp4 tubulin gamma complex component 4 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,933,695...9,962,635
Ensembl chrNW_004955416:9,933,695...9,962,635
JBrowse link
G Txnip thioredoxin interacting protein disease_progression ISO mRNA:decreased expression:stomach RGD PMID:12553030 RGD:1642760 NCBI chrNW_004955568:103,801...107,791
Ensembl chrNW_004955568:103,762...107,785
JBrowse link
G Tyro3 TYRO3 protein tyrosine kinase ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,361,722...8,377,629
Ensembl chrNW_004955416:8,359,207...8,377,692
JBrowse link
G Uaca uveal autoantigen with coiled-coil domains and ankyrin repeats ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:6,122,271...6,195,345
Ensembl chrNW_004955450:6,122,439...6,197,177
JBrowse link
G Ubap1l ubiquitin associated protein 1 like ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,312,032...10,332,917
Ensembl chrNW_004955450:10,319,407...10,332,646
JBrowse link
G Ube2q2 ubiquitin conjugating enzyme E2 Q2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:1,102,404...1,151,511
Ensembl chrNW_004955450:1,102,404...1,152,272
JBrowse link
G Ubl7 ubiquitin like 7 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,379,201...3,391,938
Ensembl chrNW_004955450:3,378,600...3,392,601
JBrowse link
G Ubr1 ubiquitin protein ligase E3 component n-recognin 1 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,571,628...9,731,551
Ensembl chrNW_004955416:9,572,171...9,731,453
JBrowse link
G Ulk3 unc-51 like kinase 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:3,095,604...3,101,774
Ensembl chrNW_004955450:3,095,607...3,101,832
JBrowse link
G Unc13c unc-13 homolog C ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:889,912...1,325,136
Ensembl chrNW_004955409:891,347...1,325,164
JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:11,729,433...11,802,462
Ensembl chrNW_004955450:11,727,104...11,802,462
JBrowse link
G Usp50 ubiquitin specific peptidase 50 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,788,723...3,838,077
Ensembl chrNW_004955409:3,788,903...3,837,983
JBrowse link
G Usp8 ubiquitin specific peptidase 8 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:3,839,308...3,903,595
Ensembl chrNW_004955409:3,840,007...3,891,284
JBrowse link
G Vegfa vascular endothelial growth factor A ameliorates ISO human cells in mouse model
mRNA:increased expression:colorectum (human)
RGD PMID:21839130 PMID:30789971 RGD:151893289 RGD:152985531 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:13,016,933...13,178,797
Ensembl chrNW_004955450:13,016,950...13,174,990
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,772,653...7,780,408
Ensembl chrNW_004955416:7,772,653...7,782,542
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:8,893,249...8,936,351
Ensembl chrNW_004955416:8,893,249...8,936,351
JBrowse link
G Wdr72 WD repeat domain 72 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955409:1,451,506...1,631,976
Ensembl chrNW_004955409:1,467,732...1,674,042
JBrowse link
G Wdr73 WD repeat domain 73 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,471,479...14,485,416
Ensembl chrNW_004955416:14,471,421...14,485,201
JBrowse link
G Wdr76 WD repeat domain 76 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:10,280,112...10,337,963
Ensembl chrNW_004955416:10,279,835...10,335,521
JBrowse link
G Wdr93 WD repeat domain 93 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,472,866...15,527,853
Ensembl chrNW_004955416:15,472,742...15,517,144
JBrowse link
G Whamm WASP homolog associated with actin, golgi membranes and microtubules ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:13,825,925...13,849,883
Ensembl chrNW_004955416:13,826,372...13,849,245
JBrowse link
G Wrap53 WD repeat containing antisense to TP53 onset ISO RGD PMID:26013439 PMID:30175821 RGD:21081520 RGD:21081528 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
G Xiap X-linked inhibitor of apoptosis ISO mRNA, protein:increased expression:colonic mucosa (human) RGD PMID:27827395 RGD:153344527 NCBI chrNW_004955473:10,823,795...10,878,256
Ensembl chrNW_004955473:10,827,435...10,840,604
JBrowse link
G Xpo1 exportin 1 ameliorates ISO human cell line in a mouse model RGD PMID:26603256 PMID:33745946 RGD:151665795 RGD:151667439 NCBI chrNW_004955424:22,370,006...22,420,568
Ensembl chrNW_004955424:22,370,006...22,420,568
JBrowse link
G Xpo5 exportin 5 susceptibility ISO DNA:snp, haplotype:3' utr:c.*659A>C (rs11077) (human) RGD PMID:26147304 RGD:11041733 NCBI chrNW_004955437:9,351,045...9,392,396
Ensembl chrNW_004955437:9,351,045...9,392,396
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 susceptibility
severity
treatment
disease_progression
ISO DNA:SNP:: p.R194W (human)
DNA:missense mutation:cds: p.R399Q (human)
DNA:missense mutation:cds: p.R399Q G>A (human)
DNA:missense mutation:exon 10: p.R399Q (human)
DNA:missense mutation:exon 10: p.R399Q (rs25487) (human)
DNA:SNP:exon 10: p.R399Q G>A (human)
DNA:SNP:3'utr: (rs1799782) (human)
DNA:SNP:cds: p.R399Q (human)
DNA:SNP:exon 6: C>T p.R194W (human)
DNA:SNP:exon 10: p.R399Q (human)
RGD PMID:15800946 PMID:17009149 PMID:22524842 PMID:22549274 PMID:22580644 More... RGD:11353313 RGD:150530641 RGD:150537038 RGD:150537039 RGD:150539454 RGD:150540339 RGD:150540340 RGD:150573706 RGD:150573803 RGD:150573806 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 ISO ClinVar Annotator: match by term: Colorectal cancer ClinVar PMID:28492532 PMID:32235514 NCBI chrNW_004955491:6,579,443...6,629,410
Ensembl chrNW_004955491:6,599,085...6,629,439
JBrowse link
G Yap1 Yes1 associated transcriptional regulator treatment ISO human cells in mouse model RGD PMID:32682784 RGD:153297782 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408
JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 ameliorates ISO human cells in mouse model RGD PMID:34974791 RGD:153344629 NCBI chrNW_004955528:935,182...951,722
Ensembl chrNW_004955528:935,182...951,722
JBrowse link
G Zfand6 zinc finger AN1-type containing 6 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955533:823,883...895,713
Ensembl chrNW_004955533:877,985...894,934
JBrowse link
G Zfhx3 zinc finger homeobox 3 exacerbates ISO mRNA, protein:increased expression:colorectum (human) RGD PMID:27435776 RGD:151361165 NCBI chrNW_004955484:5,470,203...5,746,325
Ensembl chrNW_004955484:5,474,769...5,789,707
JBrowse link
G Zfyve19 zinc finger FYVE-type containing 19 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:7,672,499...7,679,851
Ensembl chrNW_004955416:7,672,592...7,679,632
JBrowse link
G Znf106 zinc finger protein 106 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,118,812...9,183,583 JBrowse link
G Znf280d zinc finger protein 280D ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:17,596,940...17,681,746
Ensembl chrNW_004955450:17,604,832...17,679,801
JBrowse link
G Znf592 zinc finger protein 592 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,328,250...14,365,346
Ensembl chrNW_004955416:14,326,603...14,365,400
JBrowse link
G Znf605 zinc finger protein 605 ISO ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 12 ClinVar PMID:23230001 PMID:25948378 PMID:28492532 PMID:30503519 NCBI chrNW_004955482:209,350...224,852
Ensembl chrNW_004955482:216,587...222,312
JBrowse link
G Znf609 zinc finger protein 609 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:10,804,761...11,002,569
Ensembl chrNW_004955450:10,808,638...10,974,590
JBrowse link
G Znf710 zinc finger protein 710 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:15,215,542...15,278,742 JBrowse link
G Znf770 zinc finger protein 770 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:2,310,024...2,318,482
Ensembl chrNW_004955416:2,310,033...2,318,300
JBrowse link
G Zscan2 zinc finger and SCAN domain containing 2 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:14,498,737...14,514,178
Ensembl chrNW_004955416:14,498,183...14,514,178
JBrowse link
G Zscan29 zinc finger and SCAN domain containing 29 ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955416:9,921,036...9,933,622
Ensembl chrNW_004955416:9,921,036...9,933,620
JBrowse link
G Zwilch zwilch kinetochore protein ISO ClinVar Annotator: match by term: Familial colorectal cancer ClinVar PMID:28492532 NCBI chrNW_004955450:9,139,214...9,170,136
Ensembl chrNW_004955450:9,139,169...9,169,921
JBrowse link
Colorectal Cancer 10 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myd88 MYD88 innate immune signal transduction adaptor ameliorates ISO RGD PMID:33177648 RGD:150519912 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit susceptibility ISO ClinVar Annotator: match by term: COLORECTAL CANCER, SUSCEPTIBILITY TO, ON CHROMOSOME 19q | ClinVar Annotator: match by term: Colorectal cancer 10 | ClinVar Annotator: match by term: Colorectal cancer, susceptibility to, 10 ClinVar
OMIM
PMID:7704014 PMID:9536098 PMID:10074927 PMID:10541966 PMID:12376507 More... NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
colorectal carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 severity ISO protein:increased expression:colonic mucosa (human) RGD PMID:14990971 RGD:11570560 NCBI chrNW_004955424:19,293,949...19,333,170
Ensembl chrNW_004955424:19,293,949...19,333,170
JBrowse link
G Actr3 actin related protein 3 severity ISO protein:increased expression:colonic mucosa (human) RGD PMID:14990971 RGD:11570560 NCBI chrNW_004955459:15,216,914...15,284,013
Ensembl chrNW_004955459:15,216,914...15,284,013
JBrowse link
G Ager advanced glycosylation end-product specific receptor treatment ISO RGD PMID:22467055 RGD:7245559 NCBI chrNW_004955437:645,482...648,607
Ensembl chrNW_004955437:645,897...648,479
JBrowse link
G Akap12 A-kinase anchoring protein 12 treatment ISO RGD PMID:21918680 RGD:14348959 NCBI chrNW_004955439:10,241,298...10,262,416
Ensembl chrNW_004955439:10,238,664...10,263,081
JBrowse link
G Antxr1 ANTXR cell adhesion molecule 1 treatment ISO RGD PMID:19528090 RGD:9684940 NCBI chrNW_004955424:15,820,734...16,034,278
Ensembl chrNW_004955424:15,824,435...16,033,946
JBrowse link
G Arid1a AT-rich interaction domain 1A onset ISO protein:decreased expression:colorectum (human) RGD PMID:24925223 RGD:126790632 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759
JBrowse link
G Axin2 axin 2 ISO ClinVar Annotator: match by term: Colorectal carcinoma ClinVar PMID:15042511 PMID:16199547 PMID:21416598 PMID:25741868 PMID:28492532 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Birc3 baculoviral IAP repeat containing 3 ameliorates ISO human cell line in a mouse model RGD PMID:30630498 RGD:152999008 NCBI chrNW_004955412:5,624,865...5,643,520
Ensembl chrNW_004955412:5,628,973...5,643,410
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:14732230 RGD:1580058 NCBI chrNW_004955429:6,548,586...6,553,730
Ensembl chrNW_004955429:6,547,731...6,558,105
JBrowse link
G Brca1 BRCA1 DNA repair associated ISO RGD PMID:11497291 RGD:126925969 NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brca2 BRCA2 DNA repair associated ISO RGD PMID:11497291 RGD:126925969 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Brd7 bromodomain containing 7 severity ISO mRNA,protein:decreased expression:colon: RGD PMID:23215825 RGD:9586444 NCBI chrNW_004955433:8,425,976...8,462,431
Ensembl chrNW_004955433:8,424,949...8,461,802
JBrowse link
G Ca12 carbonic anhydrase 12 disease_progression ISO RGD PMID:27688658 RGD:155226860 NCBI chrNW_004955450:11,927,730...11,975,553
Ensembl chrNW_004955450:11,943,340...11,975,928
JBrowse link
G Ca2 carbonic anhydrase 2 disease_progression ISO RGD PMID:27688658 RGD:155226860 NCBI chrNW_004955417:3,388,110...3,402,798
Ensembl chrNW_004955417:3,386,087...3,402,363
JBrowse link
G Calu calumenin ISO mRNA:increased expression:colon (human) RGD PMID:18776587 RGD:2316232 NCBI chrNW_004955479:9,541,574...9,572,189
Ensembl chrNW_004955479:9,541,568...9,572,266
JBrowse link
G Cat catalase treatment ISO RGD PMID:29229353 RGD:127284843 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464
JBrowse link
G Cbx7 chromobox 7 disease_progression ISO mRNA:decreased expression::colorectum: RGD PMID:22041561 RGD:9587355 NCBI chrNW_004955413:25,079,627...25,100,039
Ensembl chrNW_004955413:25,086,186...25,100,039
JBrowse link
G Cd59 CD59 molecule (CD59 blood group) ISO RGD PMID:12909127 RGD:1600485 NCBI chrNW_004955422:12,500,572...12,528,738 JBrowse link
G Chi3l1 chitinase 3 like 1 severity ISO protein:increased secretion:serum (human) RGD PMID:12124825 RGD:4892637 NCBI chrNW_004955406:39,195,101...39,201,808
Ensembl chrNW_004955406:39,191,073...39,202,020
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO mRNA:decreased expression:colorectal mucosa (human) RGD PMID:28675510 RGD:150524297 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 disease_progression ISO mRNA,protein:increased expression:colorectum (human) RGD PMID:18803056 RGD:151893518 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109
JBrowse link
G Efnb2 ephrin B2 ameliorates ISO human cells in mouse model RGD PMID:26494468 RGD:153300950 NCBI chrNW_004955404:5,000,906...5,030,068
Ensembl chrNW_004955404:5,000,906...5,030,126
JBrowse link
G Ep300 E1A binding protein p300 ISO ClinVar Annotator: match by term: Colorectal carcinoma ClinVar PMID:15706485 PMID:24476420 PMID:25741868 PMID:28492532 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor treatment ISO human cell line in a mouse model RGD PMID:28665687 RGD:155260341 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO protein:increased expression:large intestine RGD PMID:30214616 RGD:126779593 NCBI chrNW_004955491:4,215,353...4,292,229
Ensembl chrNW_004955491:4,215,298...4,292,235
JBrowse link
G Fubp1 far upstream element binding protein 1 ISO mRNA, protein:increased expression:colorectum (human) RGD PMID:25030436 RGD:151361190 NCBI chrNW_004955423:15,245,645...15,278,628
Ensembl chrNW_004955423:15,245,610...15,278,628
JBrowse link
G Gpx2 glutathione peroxidase 2 ISO mRNA:increased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955466:4,983,532...4,987,780
Ensembl chrNW_004955466:4,984,631...4,987,457
JBrowse link
G Gpx3 glutathione peroxidase 3 ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955408:2,622,162...2,629,088
Ensembl chrNW_004955408:2,622,741...2,629,032
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M disease_progression ISO protein:increased expression:colonic epithelium (human) RGD PMID:24381081 RGD:10054273 NCBI chrNW_004955563:933,824...975,064 JBrowse link
G Ifng interferon gamma ISO RGD PMID:16717119 RGD:150573704 NCBI chrNW_004955458:14,643,333...14,648,020
Ensembl chrNW_004955458:14,643,313...14,648,045
JBrowse link
G Il2 interleukin 2 treatment ISO RGD PMID:29229353 RGD:127284843 NCBI chrNW_004955428:18,163,010...18,168,157
Ensembl chrNW_004955428:18,162,467...18,168,265
JBrowse link
G Il6 interleukin 6 treatment ISO RGD PMID:29229353 RGD:127284843 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Itgb3 integrin subunit beta 3 severity ISO RGD PMID:11299820 RGD:5112894 NCBI chrNW_004955478:9,788,192...9,830,254
Ensembl chrNW_004955478:9,788,149...9,823,746
JBrowse link
G Jak2 Janus kinase 2 treatment ISO RGD PMID:29229353 RGD:127284843 NCBI chrNW_004955434:9,227,897...9,341,208
Ensembl chrNW_004955434:9,227,595...9,341,208
JBrowse link
G Mapk14 mitogen-activated protein kinase 14 treatment
ameliorates
ISO human cell line in a mouse model RGD PMID:23624232 PMID:25548290 PMID:27286263 RGD:151665352 RGD:151665507 RGD:151665508 NCBI chrNW_004955437:3,836,331...3,884,083
Ensembl chrNW_004955437:3,838,232...3,884,083
JBrowse link
G Mbd4 methyl-CpG binding domain 4, DNA glycosylase ISO DNA:insertion, deletion:exon:c.939_940insA, c.939delA (human) RGD PMID:10637515 RGD:9588975 NCBI chrNW_004955429:17,858,656...17,868,111
Ensembl chrNW_004955429:17,858,937...17,869,262
JBrowse link
G Msh3 mutS homolog 3 ISO RGD PMID:9401011 RGD:1625103 NCBI chrNW_004955418:29,149,595...29,274,067
Ensembl chrNW_004955418:29,150,085...29,274,437
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:9401011 RGD:1625103 NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor exacerbates
ameliorates
ISO mRNA:increased expression:colon (human)
human cell line in a mouse model
RGD PMID:30221070 PMID:31746347 RGD:150519917 RGD:150520167 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Ncoa2 nuclear receptor coactivator 2 ameliorates
disease_progression
ISO human gene and cell line in a mouse model
protein:increased expression:colorectum, myofibroblast cell, cytoplasm (human)
RGD PMID:19277704 PMID:25823027 RGD:11085507 RGD:153002577 NCBI chrNW_004955444:9,313,748...9,587,109
Ensembl chrNW_004955444:9,313,447...9,584,913
JBrowse link
G Nf1 neurofibromin 1 severity ISO protein:increased expression:colorectum (human) RGD PMID:27798892 RGD:150429697 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179
JBrowse link
G Phf6 PHD finger protein 6 ISO mRNA:increased expression:colorectal mucosa (human) RGD PMID:28675510 RGD:150524297 NCBI chrNW_004955473:527,005...586,589
Ensembl chrNW_004955473:527,005...586,627
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha severity ISO DNA:mutations:exons: RGD PMID:17546593 RGD:14402406 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit exacerbates ISO protein:decreased expression:colorectum (human) RGD PMID:32567205 RGD:151347643 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 ISO protein: decreased expression RGD PMID:14750179 RGD:6483362 NCBI chrNW_004955437:1,513,425...1,516,164
Ensembl chrNW_004955437:1,513,418...1,516,164
JBrowse link
G Ptprb protein tyrosine phosphatase receptor type B ISO associated with metastasis; human cells in mouse model RGD PMID:31040266 RGD:151361283 NCBI chrNW_004955405:10,647,777...10,766,909
Ensembl chrNW_004955405:10,648,818...10,766,993
JBrowse link
G Rac1 Rac family small GTPase 1 exacerbates
ameliorates
ISO protein:increased expression:colorectum (human)
protein:increased activity:colorectal mucosa (human)
human cell line in a mouse model
RGD PMID:23559092 PMID:25529012 PMID:30064309 RGD:153298972 RGD:153350124 RGD:153350139 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rad21 RAD21 cohesin complex component exacerbates ISO mRNA, protein:increased expression:colorectum (human) RGD PMID:30546056 RGD:150520034 NCBI chrNW_004955417:22,941,549...22,966,395
Ensembl chrNW_004955417:22,941,479...22,966,837
JBrowse link
G Selenop selenoprotein P ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955426:26,951,003...26,961,839 JBrowse link
G Selenos selenoprotein S ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955416:28,152,984...28,162,173
Ensembl chrNW_004955416:28,153,460...28,162,095
JBrowse link
G Sephs2 selenophosphate synthetase 2 ISO mRNA:decreased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955493:7,370,869...7,373,121
Ensembl chrNW_004955493:7,371,617...7,372,945
JBrowse link
G Sh2b3 SH2B adaptor protein 3 exacerbates ISO protein:decreased expression:colorectum (human) RGD PMID:31706103 RGD:153297781 NCBI chrNW_004955482:8,079,905...8,100,791
Ensembl chrNW_004955482:8,096,160...8,097,765
JBrowse link
G Smad4 SMAD family member 4 disease_progression ISO RGD PMID:26861460 RGD:21066335 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 exacerbates ISO protein:increased expression:colorectum (human) RGD PMID:30144500 RGD:151347859 NCBI chrNW_004955420:24,594,057...24,729,108
Ensembl chrNW_004955420:24,593,830...24,729,108
JBrowse link
G Socs1 suppressor of cytokine signaling 1 ISO RGD PMID:16717119 RGD:150573704 NCBI chrNW_004955442:7,321,337...7,323,109
Ensembl chrNW_004955442:7,321,337...7,323,109
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase severity ISO RGD PMID:11443610 RGD:150521545 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Stat3 signal transducer and activator of transcription 3 treatment ISO RGD PMID:29229353 RGD:127284843 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Strap serine/threonine kinase receptor associated protein ISO RGD PMID:16778189 RGD:1581429 NCBI chrNW_004955413:12,533,422...12,558,138
Ensembl chrNW_004955413:12,533,423...12,559,288
JBrowse link
G Tp53 tumor protein p53 ISO DNA:missense mutation::p.R72P (human) RGD PMID:29560751 RGD:14995498 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
G Txnrd3 thioredoxin reductase 3 ISO mRNA:increased expression:colorectum (human) RGD PMID:30469315 RGD:151665806 NCBI chrNW_004955429:16,845,466...16,880,481
Ensembl chrNW_004955429:16,845,526...16,879,797
JBrowse link
G Xpo1 exportin 1 disease_progression ISO protein:increased expression:colorectum (human) RGD PMID:31870117 RGD:151665794 NCBI chrNW_004955424:22,370,006...22,420,568
Ensembl chrNW_004955424:22,370,006...22,420,568
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 susceptibility ISO DNA:SNPs:exon 6, exon 10: p.R194W, p.R399Q (human) RGD PMID:28638257 RGD:150539031 NCBI chrNW_004955555:1,293,416...1,315,839
Ensembl chrNW_004955555:1,293,416...1,315,839
JBrowse link
descending colon cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm5c lysine demethylase 5C onset ISO associate with colorectal cancer;DNA:mutations:multiple (human) RGD PMID:30018131 RGD:151361178 NCBI chrNW_004955475:243,666...278,064
Ensembl chrNW_004955475:243,666...278,627
JBrowse link
familial adenomatous polyposis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1 ATP binding cassette subfamily B member 1 ISO protein,mRNA:increased expression:small intestine (mouse) RGD PMID:12615699 RGD:8657097 NCBI chrNW_004955432:4,911,774...5,085,349 JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17942926 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: APC-Associated Polyposis Disorders | ClinVar Annotator: match by term: Adenomatous colonic polyposis | ClinVar Annotator: match by term: Familial adenomatous polyposis | ClinVar Annotator: match by term: Familial multiple polyposis syndrome | ClinVar Annotator: match by term: POLYPOSIS, ADENOMATOUS INTESTINAL | ClinVar Annotator: match by term: Polymerase proofreading-related adenomatous polyposis
ClinVar Annotator: match by term: APC-Associated Polyposis Disorders | ClinVar Annotator: match by term: Adenomatous colonic polyposis | ClinVar Annotator: match by term: Familial adenomatous polyposis | ClinVar Annotator: match by term: Familial multiple polyposis syndrome | ClinVar Annotator: match by term: MYH-associated polyposis | ClinVar Annotator: match by term: POLYPOSIS, ADENOMATOUS INTESTINAL
ClinVar PMID:1316610 PMID:1319115 PMID:1324223 PMID:1338764 PMID:1338904 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Axin2 axin 2 ISO protein:increased expression:mucosa: RGD PMID:11809809 RGD:151356508 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Cd44 CD44 molecule (IN blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:28255344 NCBI chrNW_004955422:11,106,061...11,189,951 JBrowse link
G Csf1r colony stimulating factor 1 receptor severity ISO DNA:SNPs,haplotype:promoter:multiple (pig) RGD PMID:32717306 RGD:150524307 NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Egfr epidermal growth factor receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:25200834 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G F5 coagulation factor V ISO CTD Direct Evidence: marker/mechanism CTD PMID:25200834 NCBI chrNW_004955462:7,695,004...7,757,832
Ensembl chrNW_004955462:7,694,939...7,757,463
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO CTD Direct Evidence: marker/mechanism CTD PMID:22561515 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271
JBrowse link
G Hdac2 histone deacetylase 2 treatment ISO RGD PMID:24218540 RGD:9590246 NCBI chrNW_004955526:2,739,099...2,759,640
Ensembl chrNW_004955526:2,728,377...2,759,707
JBrowse link
G Ihh Indian hedgehog signaling molecule ISO RGD PMID:25307863 RGD:11528847 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747
JBrowse link
G Itih4 inter-alpha-trypsin inhibitor heavy chain 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25200834 NCBI chrNW_004955430:2,772,064...2,787,912
Ensembl chrNW_004955430:2,770,373...2,789,131
JBrowse link
G Lrg1 leucine rich alpha-2-glycoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25200834 NCBI chrNW_004955495:4,402,670...4,405,666
Ensembl chrNW_004955495:4,402,746...4,406,943
JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:8071957 NCBI chrNW_004955408:32,928,519...33,265,049
Ensembl chrNW_004955408:32,928,519...33,264,727
JBrowse link
G Msh3 mutS homolog 3 ISO CTD Direct Evidence: marker/mechanism CTD NCBI chrNW_004955418:29,149,595...29,274,067
Ensembl chrNW_004955418:29,150,085...29,274,437
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Familial multiple polyposis syndrome | ClinVar Annotator: match by term: MYH-associated polyposis ClinVar PMID:11818965 PMID:12393807 PMID:12606733 PMID:12707038 PMID:12853198 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Nthl1 nth like DNA glycosylase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25938944 NCBI chrNW_004955442:15,210,799...15,223,272
Ensembl chrNW_004955442:15,217,019...15,223,272
JBrowse link
G Plcg1 phospholipase C gamma 1 ISO protein:increased expression:colonic mucosa (human) RGD PMID:8174133 RGD:151356944 NCBI chrNW_004955445:15,787,496...15,823,859
Ensembl chrNW_004955445:15,787,496...15,823,859
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO ClinVar Annotator: match by term: Polymerase proofreading-related adenomatous polyposis ClinVar PMID:25741868 PMID:26467025 PMID:28492532 NCBI chrNW_004955559:712,375...730,551
Ensembl chrNW_004955559:712,321...725,661
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO ClinVar Annotator: match by term: Polymerase proofreading-related adenomatous polyposis ClinVar PMID:20951805 PMID:21157497 PMID:22980975 PMID:23636398 PMID:24033266 More... NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17942926 NCBI chrNW_004955406:25,077,988...25,086,259
Ensembl chrNW_004955406:25,079,945...25,086,171
JBrowse link
G Sod2 superoxide dismutase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:12907644 NCBI chrNW_004955439:21,209,101...21,223,538
Ensembl chrNW_004955439:21,209,101...21,224,163
JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: MYH-associated polyposis ClinVar PMID:25741868 PMID:26467025 PMID:28135145 PMID:28492532 PMID:33471991 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
familial adenomatous polyposis 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ablim3 actin binding LIM protein family member 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,151,445...5,261,300
Ensembl chrNW_004955415:5,153,410...5,261,042
JBrowse link
G Acsl6 acyl-CoA synthetase long chain family member 6 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,336,214...3,391,117
Ensembl chrNW_004955408:3,333,392...3,392,141
JBrowse link
G Adamts19 ADAM metallopeptidase with thrombospondin type 1 motif 19 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:2,384,530...2,617,454
Ensembl chrNW_004955415:2,384,530...2,617,780
JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:20,603,323...21,039,891 JBrowse link
G Adrb2 adrenoceptor beta 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,515,157...5,517,198
Ensembl chrNW_004955415:5,515,697...5,516,980
JBrowse link
G Afap1l1 actin filament associated protein 1 like 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,079,876...5,140,905
Ensembl chrNW_004955415:5,082,340...5,141,321
JBrowse link
G Aff4 ALF transcription elongation factor 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,247,730...4,305,194
Ensembl chrNW_004955408:4,248,563...4,305,194
JBrowse link
G Aldh7a1 aldehyde dehydrogenase 7 family member A1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:4,365,075...4,396,105
Ensembl chrNW_004955521:4,364,638...4,396,129
JBrowse link
G Anxa6 annexin A6 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,522,027...2,565,862
Ensembl chrNW_004955408:2,522,027...2,570,426
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,621,062...35,680,620
Ensembl chrNW_004955408:35,621,062...35,680,683
JBrowse link
G Apbb3 amyloid beta precursor protein binding family B member 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:118,577...126,021
Ensembl chrNW_004955418:120,119...125,711
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 OMIM
ClinVar
PMID:186122 PMID:814096 PMID:950360 PMID:1316610 PMID:1317264 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Arap3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:12,098,009...12,121,722
Ensembl chrNW_004955415:12,099,651...12,121,122
JBrowse link
G Arb2a ARB2 cotranscriptional regulator A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:18,213,824...18,624,082
Ensembl chrNW_004955418:18,245,947...18,589,185
JBrowse link
G Arhgap26 Rho GTPase activating protein 26 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:10,635,410...11,066,551
Ensembl chrNW_004955415:10,637,036...11,066,942
JBrowse link
G Arhgef37 Rho guanine nucleotide exchange factor 37 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,850,120...4,900,483
Ensembl chrNW_004955415:4,858,355...4,900,786
JBrowse link
G Arl14epl ADP ribosylation factor like GTPase 14 effector protein like ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,859,152...35,864,159
Ensembl chrNW_004955408:35,858,944...35,865,040
JBrowse link
G Arrdc3 arrestin domain containing 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:20,538,858...20,550,876
Ensembl chrNW_004955418:20,538,983...20,548,862
JBrowse link
G Arsi arylsulfatase family member I ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,234,491...4,240,970
Ensembl chrNW_004955415:4,234,485...4,240,995
JBrowse link
G Arsk arylsulfatase family member K ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,959,736...16,989,293
Ensembl chrNW_004955418:16,956,754...16,989,593
JBrowse link
G Atg12 autophagy related 12 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,607,541...35,620,878
Ensembl chrNW_004955408:35,607,541...35,620,878
JBrowse link
G Atox1 antioxidant 1 copper chaperone ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:6,156,334...6,168,423
Ensembl chrNW_004955408:6,156,334...6,168,607
JBrowse link
G Brd8 bromodomain containing 8 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,232,853...2,275,812
Ensembl chrNW_004955418:2,232,842...2,275,875
JBrowse link
G Camk2a calcium/calmodulin dependent protein kinase II alpha ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,247,307...4,307,402
Ensembl chrNW_004955415:4,247,014...4,307,458
JBrowse link
G Camk4 calcium/calmodulin dependent protein kinase IV ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:3,664,352...3,887,175
Ensembl chrNW_004955418:3,664,479...3,887,175
JBrowse link
G Camlg calcium modulating ligand ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:29,968,962...29,977,896
Ensembl chrNW_004955408:29,968,934...29,979,794
JBrowse link
G Cast calpastatin ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:15,859,951...15,974,141
Ensembl chrNW_004955418:15,862,729...15,916,169
JBrowse link
G Catsper3 cation channel sperm associated 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,150,736...30,179,834
Ensembl chrNW_004955408:30,150,197...30,179,872
JBrowse link
G Ccdc112 coiled-coil domain containing 112 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,052,985...35,069,032
Ensembl chrNW_004955408:35,052,985...35,069,035
JBrowse link
G Ccdc69 coiled-coil domain containing 69 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,471,157...2,498,611 JBrowse link
G Ccnh cyclin H ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:23,790,398...23,807,509
Ensembl chrNW_004955418:23,790,001...23,807,702
JBrowse link
G Ccni2 cyclin I family member 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,126,198...4,129,209 JBrowse link
G Cd14 CD14 molecule ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:73,736...75,345
Ensembl chrNW_004955418:73,897...75,224
JBrowse link
G Cd74 CD74 molecule ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,129,151...4,138,336
Ensembl chrNW_004955415:4,129,254...4,137,826
JBrowse link
G Cdc23 cell division cycle 23 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,194,937...2,221,928
Ensembl chrNW_004955418:2,194,689...2,221,928
JBrowse link
G Cdc25c cell division cycle 25C ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,114,053...2,138,513 JBrowse link
G Cdc42se2 CDC42 small effector 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,780,126...2,881,800
Ensembl chrNW_004955408:2,844,135...2,881,800
JBrowse link
G Cdkl3 cyclin dependent kinase like 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,466,943...5,552,572
Ensembl chrNW_004955408:5,471,700...5,552,572
JBrowse link
G Cdkn2aipnl CDKN2A interacting protein N-terminal like ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,581,512...5,587,473
Ensembl chrNW_004955408:5,581,512...5,587,473
JBrowse link
G Cdo1 cysteine dioxygenase type 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,593,981...35,605,189
Ensembl chrNW_004955408:35,593,767...35,605,189
JBrowse link
G Cdx1 caudal type homeobox 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,337,903...4,355,782
Ensembl chrNW_004955415:4,337,903...4,355,782
JBrowse link
G Cep120 centrosomal protein 120 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:1,452,514...1,504,763
Ensembl chrNW_004955521:1,454,102...1,504,763
JBrowse link
G Cetn3 centrin 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:21,206,387...21,220,984
Ensembl chrNW_004955418:21,206,387...21,222,456
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:14,200,618...14,268,361
Ensembl chrNW_004955418:14,200,617...14,268,361
JBrowse link
G Chsy3 chondroitin sulfate synthase 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:2,748,776...2,994,041
Ensembl chrNW_004955415:2,748,777...2,991,782
JBrowse link
G Commd10 COMM domain containing 10 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,887,995...36,045,085
Ensembl chrNW_004955408:35,887,802...36,043,835
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,434,486...4,462,505
Ensembl chrNW_004955415:4,434,453...4,461,751
JBrowse link
G Csf2 colony stimulating factor 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,452,009...3,454,255
Ensembl chrNW_004955408:3,451,965...3,454,312
JBrowse link
G Csnk1a1 casein kinase 1 alpha 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,921,356...4,966,705
Ensembl chrNW_004955415:4,921,852...4,966,705
JBrowse link
G Csnk1g3 casein kinase 1 gamma 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:1,660,090...1,721,811
Ensembl chrNW_004955521:1,660,090...1,721,874
JBrowse link
G Ctnna1 catenin alpha 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,592,555...1,754,423
Ensembl chrNW_004955418:1,592,229...1,754,689
JBrowse link
G Ctxn3 cortexin 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:731,895...741,765
Ensembl chrNW_004955415:740,558...740,803
JBrowse link
G CUNH5orf46 chromosome unknown C5orf46 homolog ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,312,822...6,317,652
Ensembl chrNW_004955415:6,312,867...6,320,457
JBrowse link
G Cxcl14 C-X-C motif chemokine ligand 14 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,733,079...30,740,854
Ensembl chrNW_004955408:30,733,079...30,740,854
JBrowse link
G Cxxc5 CXXC finger protein 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:932,198...965,894
Ensembl chrNW_004955418:929,444...965,894
JBrowse link
G Cystm1 cysteine rich transmembrane module containing 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:415,703...475,796
Ensembl chrNW_004955418:415,703...475,796
JBrowse link
G Dcp2 decapping mRNA 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:11257105 PMID:14672538 PMID:17963004 PMID:18487285 PMID:19279422 More... NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Dctn4 dynactin subunit 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:3,850,475...3,886,953
Ensembl chrNW_004955415:3,850,086...3,886,953
JBrowse link
G Ddx46 DEAD-box helicase 46 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:29,981,509...30,031,473
Ensembl chrNW_004955408:29,981,229...30,031,473
JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,851,023...11,869,905
Ensembl chrNW_004955415:11,854,526...11,869,777
JBrowse link
G Diaph1 diaphanous related formin 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:12,156,152...12,272,961
Ensembl chrNW_004955415:12,156,152...12,272,961
JBrowse link
G Dmxl1 Dmx like 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:38,705,489...38,850,770
Ensembl chrNW_004955408:38,705,595...38,848,874
JBrowse link
G Dnajc18 DnaJ heat shock protein family (Hsp40) member C18 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,119,699...1,149,891
Ensembl chrNW_004955418:1,124,616...1,149,891
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:30,795...33,394
Ensembl chrNW_004955418:30,893...32,936
JBrowse link
G Dpysl3 dihydropyrimidinase like 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,703,212...6,813,906
Ensembl chrNW_004955415:6,702,768...6,814,097
JBrowse link
G Dtwd2 DTW domain containing 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:38,497,442...38,609,561
Ensembl chrNW_004955408:38,497,442...38,609,561
JBrowse link
G Ecscr endothelial cell surface expressed chemotaxis and apoptosis regulator ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,108,805...1,116,338
Ensembl chrNW_004955418:1,109,092...1,115,997
JBrowse link
G Efna5 ephrin A5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:6,919,270...7,188,561
Ensembl chrNW_004955418:6,920,919...7,185,478
JBrowse link
G Egr1 early growth response 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,001,509...2,005,269
Ensembl chrNW_004955418:2,002,699...2,005,007
JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,615,340...16,686,632
Ensembl chrNW_004955418:16,614,543...16,687,698
JBrowse link
G Epb41l4a erythrocyte membrane protein band 4.1 like 4A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,876,345...3,097,365
Ensembl chrNW_004955418:2,876,345...3,097,365
JBrowse link
G Erap1 endoplasmic reticulum aminopeptidase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:15,827,560...15,859,720
Ensembl chrNW_004955418:15,830,371...15,859,720
JBrowse link
G Etf1 eukaryotic translation termination factor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,943,233...1,974,241 JBrowse link
G Fam114a2 family with sequence similarity 114 member A2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:8,396,185...8,434,656
Ensembl chrNW_004955408:8,397,281...8,429,502
JBrowse link
G Fam13b family with sequence similarity 13 member B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,378,423...2,454,959
Ensembl chrNW_004955418:2,378,423...2,454,959
JBrowse link
G Fam170a family with sequence similarity 170 member A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:39,218,958...39,230,519 JBrowse link
G Fam174a family with sequence similarity 174 member A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:12,877,465...12,912,096
Ensembl chrNW_004955418:12,877,982...12,911,864
JBrowse link
G Fam81b family with sequence similarity 81 member B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:17,080,146...17,126,868
Ensembl chrNW_004955418:17,078,296...17,127,502
JBrowse link
G Fat2 FAT atypical cadherin 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,944,236...6,033,776
Ensembl chrNW_004955408:5,941,800...6,033,878
JBrowse link
G Fbn2 fibrillin 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:1,307,553...1,535,435
Ensembl chrNW_004955415:1,309,077...1,537,052
JBrowse link
G Fbxl17 F-box and leucine rich repeat protein 17 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:6,314,503...6,758,531 JBrowse link
G Fbxo38 F-box protein 38 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,841,269...5,888,830
Ensembl chrNW_004955415:5,841,038...5,889,110
JBrowse link
G Fchsd1 FCH and double SH3 domains 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:12,123,520...12,135,412
Ensembl chrNW_004955415:12,123,520...12,135,412
JBrowse link
G Fem1c fem-1 homolog C ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,291,791...35,315,628
Ensembl chrNW_004955408:35,291,685...35,316,330
JBrowse link
G Fer FER tyrosine kinase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:5,612,919...5,981,549
Ensembl chrNW_004955418:5,614,950...5,981,636
JBrowse link
G Fgf1 fibroblast growth factor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,151,330...11,245,554
Ensembl chrNW_004955415:11,151,266...11,247,344
JBrowse link
G Fnip1 folliculin interacting protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,117,258...3,238,223
Ensembl chrNW_004955408:3,117,277...3,238,223
JBrowse link
G Fstl4 follistatin like 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,521,922...4,898,697
Ensembl chrNW_004955408:4,522,031...4,898,690
JBrowse link
G Ftmt ferritin mitochondrial ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:76,591...77,470 JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:6,197,988...6,223,135
Ensembl chrNW_004955408:6,197,361...6,215,979
JBrowse link
G Galnt10 polypeptide N-acetylgalactosaminyltransferase 10 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:8,578,725...8,804,562
Ensembl chrNW_004955408:8,578,725...8,800,800
JBrowse link
G Gdf9 growth differentiation factor 9 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,234,208...4,239,795 JBrowse link
G Gfra3 GDNF family receptor alpha 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,152,887...2,162,883
Ensembl chrNW_004955418:2,143,169...2,163,286
JBrowse link
G Gin1 gypsy retrotransposon integrase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:10,898,069...10,918,460
Ensembl chrNW_004955418:10,898,293...10,918,544
JBrowse link
G Glra1 glycine receptor alpha 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:6,236,092...6,333,166
Ensembl chrNW_004955408:6,236,092...6,333,166
JBrowse link
G Glrx glutaredoxin ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,747,709...16,754,718
Ensembl chrNW_004955418:16,747,776...16,752,858
JBrowse link
G Gm2a GM2 ganglioside activator ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,442,406...2,449,426
Ensembl chrNW_004955408:2,442,406...2,449,426
JBrowse link
G Gnpda1 glucosamine-6-phosphate deaminase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,770,111...11,783,430
Ensembl chrNW_004955415:11,770,063...11,784,188
JBrowse link
G Gpr150 G protein-coupled receptor 150 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,942,505...16,945,580 JBrowse link
G Gpr151 G protein-coupled receptor 151 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,592,958...7,596,586 JBrowse link
G Gpx3 glutathione peroxidase 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,622,162...2,629,088
Ensembl chrNW_004955408:2,622,741...2,629,032
JBrowse link
G Gramd2b GRAM domain containing 2B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:4,220,325...4,320,452
Ensembl chrNW_004955521:4,219,461...4,320,858
JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:7,912,223...8,226,241
Ensembl chrNW_004955408:7,912,592...8,223,570
JBrowse link
G Grpel2 GrpE like 2, mitochondrial ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955853:1,443...9,278
Ensembl chrNW_004955853:1,442...9,278
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:8,203,968...8,220,148
Ensembl chrNW_004955415:8,203,968...8,220,148
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:8,848,723...8,851,804
Ensembl chrNW_004955408:8,848,559...8,851,994
JBrowse link
G Hars1 histidyl-tRNA synthetase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:19,346...30,514
Ensembl chrNW_004955418:19,346...30,514
JBrowse link
G Hars2 histidyl-tRNA synthetase 2, mitochondrial ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:12,550...19,282
Ensembl chrNW_004955418:12,550...19,282
JBrowse link
G Hbegf heparin binding EGF like growth factor ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:259,860...321,340
Ensembl chrNW_004955418:309,096...321,387
JBrowse link
G Hdac3 histone deacetylase 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:12,138,520...12,154,234
Ensembl chrNW_004955415:12,138,870...12,154,234
JBrowse link
G Hint1 histidine triad nucleotide binding protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,673,950...2,678,528
Ensembl chrNW_004955408:2,674,109...2,678,528
JBrowse link
G Hmgxb3 HMG-box containing 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,462,653...4,509,622
Ensembl chrNW_004955415:4,463,580...4,506,961
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:32,718,736...32,719,409 JBrowse link
G Hsd17b4 hydroxysteroid 17-beta dehydrogenase 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:39,041,028...39,136,867
Ensembl chrNW_004955408:39,040,840...39,138,338
JBrowse link
G Hspa4 heat shock protein family A (Hsp70) member 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,379,825...4,422,710
Ensembl chrNW_004955408:4,379,825...4,423,381
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,915,985...1,931,017
Ensembl chrNW_004955418:1,915,985...1,931,017
JBrowse link
G Htr4 5-hydroxytryptamine receptor 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,745,056...5,802,409
Ensembl chrNW_004955415:5,685,309...5,802,409
JBrowse link
G Igip IgA inducing protein ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:527,380...536,136 JBrowse link
G Ik IK cytokine ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:39,695...52,862
Ensembl chrNW_004955418:39,695...52,862
JBrowse link
G Il13 interleukin 13 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,046,406...4,049,795 JBrowse link
G Il17b interleukin 17B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,037,270...5,047,405
Ensembl chrNW_004955415:5,041,375...5,047,449
JBrowse link
G Il4 interleukin 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,058,052...4,065,999 JBrowse link
G Il5 interleukin 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,937,128...3,951,784
Ensembl chrNW_004955408:3,937,894...3,939,358
JBrowse link
G Il9 interleukin 9 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,950,816...30,953,571
Ensembl chrNW_004955408:30,950,816...30,953,571
JBrowse link
G Irf1 interferon regulatory factor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,882,282...3,887,965
Ensembl chrNW_004955408:3,880,155...3,887,973
JBrowse link
G Irgm immunity related GTPase M ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Isoc1 isochorismatase domain containing 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:2,091,857...2,110,313
Ensembl chrNW_004955415:2,091,857...2,110,374
JBrowse link
G Jade2 jade family PHD finger 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,676,590...5,722,726
Ensembl chrNW_004955408:5,687,544...5,723,122
JBrowse link
G Jakmip2 janus kinase and microtubule interacting protein 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,431,045...6,593,485 JBrowse link
G Kcnn2 potassium calcium-activated channel subfamily N member 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:34,223,523...34,366,191
Ensembl chrNW_004955408:34,109,334...34,368,114
JBrowse link
G Kctd16 potassium channel tetramerization domain containing 16 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:9,511,749...9,795,134
Ensembl chrNW_004955415:9,523,045...9,762,624
JBrowse link
G Kdm3b lysine demethylase 3B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,026,254...2,098,223
Ensembl chrNW_004955418:2,026,254...2,098,223
JBrowse link
G Kiaa0825 KIAA0825 ortholog ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:17,818,641...18,203,402
Ensembl chrNW_004955418:17,851,078...17,995,990
JBrowse link
G Kif20a kinesin family member 20A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,222,398...2,232,775
Ensembl chrNW_004955418:2,222,398...2,232,775
JBrowse link
G Kif3a kinesin family member 3A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998
JBrowse link
G Klhl3 kelch like family member 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:32,596,497...32,719,967
Ensembl chrNW_004955408:32,596,497...32,721,059
JBrowse link
G Lars1 leucyl-tRNA synthetase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,923,292...7,983,757
Ensembl chrNW_004955415:7,923,059...7,983,757
JBrowse link
G Leap2 liver enriched antimicrobial peptide 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,245,574...4,247,117
Ensembl chrNW_004955408:4,245,574...4,247,117
JBrowse link
G Lect2 leukocyte cell derived chemotaxin 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:31,016,955...31,068,998
Ensembl chrNW_004955408:31,016,815...31,025,093
JBrowse link
G Lix1 limb and CNS expressed 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:15,509,586...15,575,059
Ensembl chrNW_004955418:15,524,533...15,575,093
JBrowse link
G Lmnb1 lamin B1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:4,583,691...4,612,271
Ensembl chrNW_004955521:4,583,671...4,612,271
JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:15,631,703...15,718,711
Ensembl chrNW_004955418:15,640,143...15,718,711
JBrowse link
G LOC102006100 TIR domain-containing adapter molecule 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,342,733...35,382,821
Ensembl chrNW_004955408:35,374,508...35,382,314
JBrowse link
G LOC102006544 cytochrome b-c1 complex subunit 8 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,240,072...4,241,342
Ensembl chrNW_004955408:4,240,072...4,241,342
JBrowse link
G LOC102006745 chromosome unknown open reading frame, human C5orf24 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,043,402...30,054,015
Ensembl chrNW_004955408:30,044,031...30,054,015
JBrowse link
G LOC102008188 core histone macro-H2A.1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118
JBrowse link
G LOC102009464 chromosome unknown open reading frame, human C5orf15 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,245,336...5,256,655
Ensembl chrNW_004955408:5,246,667...5,256,604
JBrowse link
G LOC102028408 chromosome unknown open reading frame, human C5orf63 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:144,503...163,777
Ensembl chrNW_004955415:144,961...149,546
JBrowse link
G Lox lysyl oxidase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:178,290...193,926
Ensembl chrNW_004955521:185,792...193,926
JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,636,906...1,643,430
Ensembl chrNW_004955418:1,636,828...1,643,588
JBrowse link
G Lvrn laeverin ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:35,761,737...35,823,550
Ensembl chrNW_004955408:35,761,884...35,822,443
JBrowse link
G Lyrm7 LYR motif containing 7 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,684,390...2,707,400
Ensembl chrNW_004955408:2,684,060...2,707,400
JBrowse link
G Lysmd3 LysM domain containing 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:21,103,679...21,116,005
Ensembl chrNW_004955418:21,103,679...21,116,005
JBrowse link
G Macir macrophage immunometabolism regulator ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:10,752,250...10,767,791
Ensembl chrNW_004955418:10,752,250...10,767,791
JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:5,027,962...5,191,346
Ensembl chrNW_004955418:5,027,174...5,191,346
JBrowse link
G Matr3 matrin 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,213,503...1,269,755
Ensembl chrNW_004955418:1,213,503...1,269,746
JBrowse link
G Mblac2 metallo-beta-lactamase domain containing 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:21,150,011...21,170,283
Ensembl chrNW_004955418:21,150,008...21,170,467
JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:32,928,519...33,265,049
Ensembl chrNW_004955408:32,928,519...33,264,727
JBrowse link
G Mctp1 multiple C2 and transmembrane domain containing 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:17,229,498...17,746,936
Ensembl chrNW_004955418:17,229,498...17,745,010
JBrowse link
G Mef2c myocyte enhancer factor 2C ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:22,537,388...22,701,434
Ensembl chrNW_004955418:22,537,285...22,701,434
JBrowse link
G Megf10 multiple EGF like domains 10 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:393,642...513,157
Ensembl chrNW_004955415:335,012...513,891
JBrowse link
G Mfap3 microfibril associated protein 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:8,434,641...8,455,835
Ensembl chrNW_004955408:8,443,880...8,452,203
JBrowse link
G Minar2 membrane integral NOTCH2 associated receptor 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:2,627,047...2,644,602
Ensembl chrNW_004955415:2,626,926...2,644,610
JBrowse link
G Myot myotilin ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:32,816,133...32,835,230
Ensembl chrNW_004955408:32,790,095...32,838,258
JBrowse link
G Myoz3 myozenin 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:3,908,424...3,922,114
Ensembl chrNW_004955415:3,910,035...3,922,104
JBrowse link
G Mzb1 marginal zone B and B1 cell specific protein ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,170,365...1,172,581
Ensembl chrNW_004955418:1,170,365...1,172,581
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,643,846...11,666,131
Ensembl chrNW_004955415:11,643,846...11,666,131
JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,017,142...4,078,927
Ensembl chrNW_004955415:3,999,473...4,060,998
JBrowse link
G Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:52,952...55,060
Ensembl chrNW_004955418:52,952...55,060
JBrowse link
G Neurog1 neurogenin 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,693,893...30,695,453
Ensembl chrNW_004955408:30,694,496...30,695,221
JBrowse link
G Nme5 NME/NM23 family member 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,282,721...2,301,997
Ensembl chrNW_004955418:2,282,574...2,302,106
JBrowse link
G Nmur2 neuromedin U receptor 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:6,862,243...6,872,805 JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:18,615,548...18,622,984
Ensembl chrNW_004955418:18,614,995...18,624,584
JBrowse link
G Nr3c1 nuclear receptor subfamily 3 group C member 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:10,494,704...10,585,778
Ensembl chrNW_004955415:10,494,640...10,586,221
JBrowse link
G Nrep neuronal regeneration related protein ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:3,435,784...3,464,667
Ensembl chrNW_004955418:3,436,731...3,464,667
JBrowse link
G Nrg2 neuregulin 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:548,624...793,861 JBrowse link
G Nudt12 nudix hydrolase 12 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
G P4ha2 prolyl 4-hydroxylase subunit alpha 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,574,860...3,607,015
Ensembl chrNW_004955408:3,574,860...3,607,015
JBrowse link
G Paip2 poly(A) binding protein interacting protein 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,189,822...1,208,559
Ensembl chrNW_004955418:1,189,822...1,208,559
JBrowse link
G Pam peptidylglycine alpha-amidating monooxygenase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:10,953,044...11,107,668
Ensembl chrNW_004955418:10,953,696...11,107,667
JBrowse link
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,090,808...30,137,894
Ensembl chrNW_004955408:30,090,808...30,137,964
JBrowse link
G Pcdh1 protocadherin 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,916,095...11,934,658
Ensembl chrNW_004955415:11,916,092...11,934,658
JBrowse link
G Pcdh12 protocadherin 12 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,834,007...11,848,032 JBrowse link
G Pcdha1 protocadherin alpha 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955611:363,566...396,184 JBrowse link
G Pcdhac1 protocadherin alpha subfamily C, 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955611:229,711...242,740 JBrowse link
G Pcdhb1 protocadherin beta 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955611:104,824...131,744
Ensembl chrNW_004955611:104,824...131,744
JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,181,809...16,224,274
Ensembl chrNW_004955418:16,181,771...16,224,603
JBrowse link
G Pcyox1l prenylcysteine oxidase 1 like ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,052,782...5,059,939
Ensembl chrNW_004955415:5,052,726...5,059,958
JBrowse link
G Pde6a phosphodiesterase 6A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,556,636...4,637,070
Ensembl chrNW_004955415:4,566,271...4,637,070
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,365,848...4,403,317
Ensembl chrNW_004955415:4,365,743...4,403,587
JBrowse link
G Pdlim4 PDZ and LIM domain 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,638,264...3,647,792
Ensembl chrNW_004955408:3,638,264...3,646,600
JBrowse link
G Pfdn1 prefoldin subunit 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:351,078...414,292 JBrowse link
G Pggt1b protein geranylgeranyltransferase type I subunit beta ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:34,994,545...35,049,037
Ensembl chrNW_004955408:34,994,545...35,049,037
JBrowse link
G Phax phosphorylated adaptor for RNA export ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:4,425,382...4,442,668
Ensembl chrNW_004955521:4,425,426...4,443,082
JBrowse link
G Pitx1 paired like homeodomain 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,197,374...30,202,887
Ensembl chrNW_004955408:30,197,061...30,203,054
JBrowse link
G Pja2 praja ring finger ubiquitin ligase 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:5,429,038...5,493,393
Ensembl chrNW_004955418:5,450,908...5,490,926
JBrowse link
G Pkd2l2 polycystin 2 like 2, transient receptor potential cation channel ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,443,557...2,488,860
Ensembl chrNW_004955418:2,439,773...2,488,916
JBrowse link
G Plac8l1 PLAC8 like 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,990,558...8,024,998
Ensembl chrNW_004955415:7,993,960...8,022,322
JBrowse link
G Polr3g RNA polymerase III subunit G ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:21,116,812...21,149,818 JBrowse link
G Pou4f3 POU class 4 homeobox 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,777,296...7,778,622
Ensembl chrNW_004955415:7,777,114...7,778,622
JBrowse link
G Pou5f2 POU domain class 5, transcription factor 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:18,493,622...18,494,871 JBrowse link
G Ppargc1b PPARG coactivator 1 beta ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,638,057...4,756,885
Ensembl chrNW_004955415:4,644,998...4,757,093
JBrowse link
G Ppic peptidylprolyl isomerase C ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:1,138,779...1,143,345
Ensembl chrNW_004955521:1,138,779...1,143,356
JBrowse link
G Ppip5k2 diphosphoinositol pentakisphosphate kinase 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:10,822,220...10,898,070
Ensembl chrNW_004955418:10,821,782...10,891,482
JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,435,117...5,460,361
Ensembl chrNW_004955408:5,433,268...5,460,361
JBrowse link
G Ppp2r2b protein phosphatase 2 regulatory subunit Bbeta ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,054,296...7,510,179
Ensembl chrNW_004955415:7,090,671...7,511,995
JBrowse link
G Prelid2 PRELI domain containing 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:8,259,707...8,342,179
Ensembl chrNW_004955415:8,259,575...8,342,179
JBrowse link
G Prob1 proline rich basic protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,163,993...1,169,968 JBrowse link
G Prr16 proline rich 16 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:40,118,918...40,251,144 JBrowse link
G Prrc1 proline rich coiled-coil 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:580,812...606,126
Ensembl chrNW_004955415:580,812...609,161
JBrowse link
G Psd2 pleckstrin and Sec7 domain containing 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:793,960...848,550
Ensembl chrNW_004955418:795,825...849,088
JBrowse link
G Pura purine rich element binding protein A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:538,883...548,605 JBrowse link
G Rad50 RAD50 double strand break repair protein ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,953,801...4,035,494
Ensembl chrNW_004955408:3,953,800...4,035,494
JBrowse link
G Rapgef6 Rap guanine nucleotide exchange factor 6 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,902,530...3,109,273
Ensembl chrNW_004955408:2,902,530...3,109,273
JBrowse link
G Rasa1 RAS p21 protein activator 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:23,807,740...23,897,699
Ensembl chrNW_004955418:23,807,740...23,897,707
JBrowse link
G Rbm22 RNA binding motif protein 22 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:3,895,272...3,905,801 JBrowse link
G Rbm27 RNA binding motif protein 27 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,829,022...7,901,617
Ensembl chrNW_004955415:7,829,022...7,901,720
JBrowse link
G Reep2 receptor accessory protein 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,018,891...2,024,545
Ensembl chrNW_004955418:2,018,891...2,024,456
JBrowse link
G Reep5 receptor accessory protein 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:11257105 PMID:12136240 PMID:14672538 PMID:17963004 PMID:18487285 More... NCBI chrNW_004955418:2,504,028...2,539,574
Ensembl chrNW_004955418:2,502,674...2,536,817
JBrowse link
G Rell2 RELT like 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:12,134,642...12,138,071
Ensembl chrNW_004955415:12,134,642...12,138,065
JBrowse link
G Rfesd Rieske Fe-S domain containing ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,897,714...16,900,324
Ensembl chrNW_004955418:16,896,522...16,912,749
JBrowse link
G Rgmb repulsive guidance molecule BMP co-receptor b ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:14,305,634...14,321,804
Ensembl chrNW_004955418:14,308,392...14,326,762
JBrowse link
G Rhobtb3 Rho related BTB domain containing 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,772,363...16,839,347 JBrowse link
G Riok2 RIO kinase 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:15,487,248...15,509,490
Ensembl chrNW_004955418:15,487,248...15,513,831
JBrowse link
G Rnf14 ring finger protein 14 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,797,287...11,826,936
Ensembl chrNW_004955415:11,795,031...11,823,577
JBrowse link
G Rps14 ribosomal protein S14 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,103,223...4,108,633
Ensembl chrNW_004955415:4,102,511...4,108,633
JBrowse link
G Sap30l SAP30 like ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:8,827,744...8,832,588
Ensembl chrNW_004955408:8,827,738...8,832,588
JBrowse link
G Sar1b secretion associated Ras related GTPase 1B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,737,197...5,761,228 JBrowse link
G Scgb3a2 secretoglobin family 3A member 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,332,121...6,335,474
Ensembl chrNW_004955415:6,331,535...6,335,462
JBrowse link
G Sec24a SEC24 homolog A, COPII coat complex component ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,803,438...5,850,879
Ensembl chrNW_004955408:5,803,455...5,848,093
JBrowse link
G Sema6a semaphorin 6A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:36,219,814...36,344,131
Ensembl chrNW_004955408:36,217,588...36,307,284
JBrowse link
G Septin8 septin 8 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,129,302...4,143,683
Ensembl chrNW_004955408:4,126,745...4,144,064
JBrowse link
G Sh3rf2 SH3 domain containing ring finger 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:8,024,984...8,148,970
Ensembl chrNW_004955415:8,042,380...8,147,564
JBrowse link
G Sh3tc2 SH3 domain and tetratricopeptide repeats 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,286,475...5,354,880
Ensembl chrNW_004955415:5,303,311...5,355,672
JBrowse link
G Shroom1 shroom family member 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,194,296...4,218,616 JBrowse link
G Sil1 SIL1 nucleotide exchange factor ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,322,644...1,583,352
Ensembl chrNW_004955418:1,392,985...1,583,376
JBrowse link
G Skic3 SKI3 subunit of superkiller complex ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,989,400...17,068,479
Ensembl chrNW_004955418:16,989,400...17,069,441
JBrowse link
G Skp1 S-phase kinase associated protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,393,851...5,412,644
Ensembl chrNW_004955408:5,392,839...5,412,644
JBrowse link
G Slc12a2 solute carrier family 12 member 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:1,138,297...1,219,241
Ensembl chrNW_004955415:1,137,327...1,219,241
JBrowse link
G Slc22a4 solute carrier family 22 member 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:3,671,772...3,737,946
Ensembl chrNW_004955408:3,671,772...3,737,612
JBrowse link
G Slc23a1 solute carrier family 23 member 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,176,390...1,192,270
Ensembl chrNW_004955418:1,176,000...1,186,940
JBrowse link
G Slc25a46 solute carrier family 25 member 46 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:4,316,790...4,342,748
Ensembl chrNW_004955418:4,316,790...4,341,973
JBrowse link
G Slc25a48 solute carrier family 25 member 48 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,775,521...30,940,335
Ensembl chrNW_004955408:30,901,124...30,940,383
JBrowse link
G Slc26a2 solute carrier family 26 member 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,540,302...4,556,360
Ensembl chrNW_004955415:4,540,302...4,556,360
JBrowse link
G Slc27a6 solute carrier family 27 member 6 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:1,973,308...2,041,800
Ensembl chrNW_004955415:1,973,308...2,041,866
JBrowse link
G Slc35a4 solute carrier family 35 member A4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:114,916...116,878
Ensembl chrNW_004955418:115,895...116,863
JBrowse link
G Slc36a2 solute carrier family 36 member 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,363,416...2,392,210
Ensembl chrNW_004955408:2,363,418...2,393,904
JBrowse link
G Slc36a3 solute carrier family 36 member 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,395,045...2,423,797
Ensembl chrNW_004955408:2,400,608...2,423,155
JBrowse link
G Slc4a9 solute carrier family 4 member 9 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:273,383...288,675
Ensembl chrNW_004955418:269,598...288,145
JBrowse link
G Slc6a7 solute carrier family 6 member 7 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,314,090...4,332,659
Ensembl chrNW_004955415:4,314,067...4,332,665
JBrowse link
G Slco4c1 solute carrier organic anion transporter family member 4C1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:11,587,016...11,646,242
Ensembl chrNW_004955418:11,587,014...11,646,242
JBrowse link
G Slco6a1 solute carrier organic anion transporter family member 6A1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:11,451,441...11,516,950
Ensembl chrNW_004955418:11,451,576...11,517,046
JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:17,756,610...17,818,552
Ensembl chrNW_004955418:17,756,861...17,810,663
JBrowse link
G Smad5 SMAD family member 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:31,183,727...31,228,355
Ensembl chrNW_004955408:31,183,659...31,229,384
JBrowse link
G Smim3 small integral membrane protein 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:3,789,462...3,817,117
Ensembl chrNW_004955415:3,789,462...3,816,023
JBrowse link
G Sncaip synuclein alpha interacting protein ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:410,270...548,691
Ensembl chrNW_004955521:482,433...548,751
JBrowse link
G Snx2 sorting nexin 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:870,469...934,112 JBrowse link
G Snx24 sorting nexin 24 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:1,006,353...1,126,062
Ensembl chrNW_004955521:1,045,938...1,126,037
JBrowse link
G Sowaha sosondowah ankyrin repeat domain family member A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,187,724...4,189,059 JBrowse link
G Sparc secreted protein acidic and cysteine rich ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:6,100,123...6,122,460
Ensembl chrNW_004955408:6,099,003...6,122,459
JBrowse link
G Spata24 spermatogenesis associated 24 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,157,089...1,163,897
Ensembl chrNW_004955418:1,157,089...1,165,636
JBrowse link
G Spata9 spermatogenesis associated 9 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:16,862,007...16,892,303
Ensembl chrNW_004955418:16,865,731...16,894,262
JBrowse link
G Spink1 serine peptidase inhibitor Kazal type 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,328,672...6,378,611
Ensembl chrNW_004955415:6,371,059...6,378,529
JBrowse link
G Spink5 serine peptidase inhibitor Kazal type 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,118,616...6,186,632 JBrowse link
G Spink6 serine peptidase inhibitor Kazal type 6 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,041,712...6,053,963
Ensembl chrNW_004955415:6,041,712...6,053,963
JBrowse link
G Spink7 serine peptidase inhibitor Kazal type 7 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:5,954,880...5,958,319
Ensembl chrNW_004955415:5,940,965...5,961,505
JBrowse link
G Spmip10 sperm microtubule inner protein 10 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:4,444,948...4,448,702
Ensembl chrNW_004955521:4,444,968...4,448,791
JBrowse link
G Spock1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:31,954,622...32,465,463
Ensembl chrNW_004955408:31,957,882...32,465,461
JBrowse link
G Spry4 sprouty RTK signaling antagonist 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:11,489,439...11,504,247 JBrowse link
G Sra1 steroid receptor RNA activator 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:126,111...133,498
Ensembl chrNW_004955418:126,726...133,316
JBrowse link
G Srfbp1 serum response factor binding protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:105,565...160,906
Ensembl chrNW_004955521:104,918...159,724
JBrowse link
G Srp19 signal recognition particle 19 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:11257105 PMID:12136240 PMID:14672538 PMID:17963004 PMID:18487285 More... NCBI chrNW_004955418:2,551,533...2,558,252 JBrowse link
G St8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:12,590,744...12,679,677
Ensembl chrNW_004955418:12,590,536...12,679,677
JBrowse link
G Stard4 StAR related lipid transfer domain containing 4 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:3,637,390...3,652,054
Ensembl chrNW_004955418:3,638,399...3,648,402
JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:1,091,022...1,097,064
Ensembl chrNW_004955418:1,083,613...1,100,448
JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:25741868 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
G Stk32a serine/threonine kinase 32A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:6,817,152...6,948,180
Ensembl chrNW_004955415:6,815,852...6,948,232
JBrowse link
G Synpo synaptopodin ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:3,929,781...3,977,769
Ensembl chrNW_004955415:3,932,192...3,990,022
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:12,453,655...12,456,070
Ensembl chrNW_004955415:12,453,655...12,456,070
JBrowse link
G Tcerg1 transcription elongation regulator 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:7,597,557...7,665,215
Ensembl chrNW_004955415:7,597,557...7,663,207
JBrowse link
G Tcf7 transcription factor 7 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:4,138,495...4,174,735
Ensembl chrNW_004955415:4,140,262...4,174,762
JBrowse link
G Tgfbi transforming growth factor beta induced ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:31,093,450...31,124,715
Ensembl chrNW_004955408:31,093,050...31,125,398
JBrowse link
G Ticam2 toll like receptor adaptor molecule 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955411:31,010,373...31,042,321 JBrowse link
G Tmco6 transmembrane and coiled-coil domains 6 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:55,110...61,670
Ensembl chrNW_004955418:55,110...61,705
JBrowse link
G Tmem161b transmembrane protein 161B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:23,117,162...23,185,397
Ensembl chrNW_004955418:23,117,162...23,185,517
JBrowse link
G Tmem232 transmembrane protein 232 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:4,342,019...4,566,967
Ensembl chrNW_004955418:4,352,789...4,569,658
JBrowse link
G Tnfaip8 TNF alpha induced protein 8 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:38,872,305...38,986,932
Ensembl chrNW_004955408:38,872,007...38,990,650
JBrowse link
G Tnip1 TNFAIP3 interacting protein 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:2,575,324...2,621,845
Ensembl chrNW_004955408:2,594,756...2,621,304
JBrowse link
G Trim36 tripartite motif containing 36 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:34,909,194...34,939,635
Ensembl chrNW_004955408:34,909,194...34,939,636
JBrowse link
G Trpc7 transient receptor potential cation channel subfamily C member 7 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:31,260,767...31,408,852
Ensembl chrNW_004955408:31,261,421...31,416,108
JBrowse link
G Tslp thymic stromal lymphopoietin ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:4,041,529...4,045,534 JBrowse link
G Txndc15 thioredoxin domain containing 15 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:30,067,455...30,087,095
Ensembl chrNW_004955408:30,067,557...30,086,705
JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,552,619...5,572,145
Ensembl chrNW_004955408:5,552,619...5,572,145
JBrowse link
G Ube2d2 ubiquitin conjugating enzyme E2 D2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:990,124...1,043,544
Ensembl chrNW_004955418:989,802...1,006,262
JBrowse link
G Vdac1 voltage dependent anion channel 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:5,260,444...5,275,972
Ensembl chrNW_004955408:5,260,353...5,275,990
JBrowse link
G Wdr36 WD repeat domain 36 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:3,988,073...4,023,425
Ensembl chrNW_004955418:3,988,073...4,023,974
JBrowse link
G Wdr55 WD repeat domain 55 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:33,237...37,676
Ensembl chrNW_004955418:33,648...37,556
JBrowse link
G Wnt8a Wnt family member 8A ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:2,332,636...2,338,099
Ensembl chrNW_004955418:2,332,636...2,338,085
JBrowse link
G Yipf5 Yip1 domain family member 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:9,795,214...9,809,871
Ensembl chrNW_004955415:9,795,214...9,812,405
JBrowse link
G Ythdc2 YTH N6-methyladenosine RNA binding protein C2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:33,380,822...33,448,188
Ensembl chrNW_004955408:33,381,023...33,446,239
JBrowse link
G Zcchc10 zinc finger CCHC-type containing 10 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955408:4,342,429...4,351,935
Ensembl chrNW_004955408:4,342,429...4,351,935
JBrowse link
G Zmat2 zinc finger matrin-type 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955418:4,335...10,844
Ensembl chrNW_004955418:1,633...10,844
JBrowse link
G Znf300 zinc finger protein 300 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955415:3,701,434...3,713,097
Ensembl chrNW_004955415:3,703,845...3,713,311
JBrowse link
G Znf608 zinc finger protein 608 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 1 ClinVar PMID:17963004 PMID:18487285 PMID:19279422 PMID:19409520 PMID:20685668 More... NCBI chrNW_004955521:2,604,479...2,718,775
Ensembl chrNW_004955521:2,603,835...2,718,854
JBrowse link
familial adenomatous polyposis 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bard1 BRCA1 associated RING domain 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:25186627 PMID:25741868 PMID:26315354 PMID:26467025 PMID:27443514 More... NCBI chrNW_004955457:1,187,942...1,258,475
Ensembl chrNW_004955457:1,187,942...1,253,803
JBrowse link
G Eif2b3 eukaryotic translation initiation factor 2B subunit gamma ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:28492532 NCBI chrNW_004955464:13,254,228...13,378,832
Ensembl chrNW_004955464:13,254,228...13,378,832
JBrowse link
G Hectd3 HECT domain E3 ubiquitin protein ligase 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:28492532 NCBI chrNW_004955464:13,230,534...13,238,953
Ensembl chrNW_004955464:13,230,534...13,238,953
JBrowse link
G Hpdl 4-hydroxyphenylpyruvate dioxygenase like ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:16557584 PMID:17949294 PMID:19806110 PMID:25820570 PMID:28492532 NCBI chrNW_004955464:12,936,996...12,940,050 JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 | ClinVar Annotator: match by term: MUTYH-related attenuated familial adenomatous polyposis OMIM
ClinVar
PMID:166460 PMID:186631 PMID:517270 PMID:545764 PMID:2084865 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Ptch2 patched 2 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:28492532 NCBI chrNW_004955464:13,387,844...13,403,991
Ensembl chrNW_004955464:13,387,844...13,403,991
JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: MUTYH-related attenuated familial adenomatous polyposis ClinVar PMID:25741868 PMID:26467025 PMID:28135145 PMID:28492532 PMID:33471991 NCBI chrNW_004955495:6,678,195...6,699,408
Ensembl chrNW_004955495:6,678,195...6,699,058
JBrowse link
G Toe1 target of EGR1, exonuclease ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:9536098 PMID:12056405 PMID:14618256 PMID:16199547 PMID:16408224 More... NCBI chrNW_004955464:12,924,185...12,927,567
Ensembl chrNW_004955464:12,924,191...12,927,567
JBrowse link
G Urod uroporphyrinogen decarboxylase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:28492532 NCBI chrNW_004955464:13,226,271...13,228,908
Ensembl chrNW_004955464:13,221,551...13,229,253
JBrowse link
G Vdr vitamin D receptor ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:17970811 PMID:25741868 NCBI chrNW_004955500:6,745,725...6,798,052
Ensembl chrNW_004955500:6,745,678...6,798,048
JBrowse link
G Zswim5 zinc finger SWIM-type containing 5 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 2 ClinVar PMID:28492532 NCBI chrNW_004955464:13,049,717...13,226,274
Ensembl chrNW_004955464:13,049,706...13,223,579
JBrowse link
familial adenomatous polyposis 3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nthl1 nth like DNA glycosylase 1 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 3 | ClinVar Annotator: match by term: NTHL1-related condition OMIM
ClinVar
PMID:9536098 PMID:9705289 PMID:12840008 PMID:16199547 PMID:17576681 More... NCBI chrNW_004955442:15,210,799...15,223,272
Ensembl chrNW_004955442:15,217,019...15,223,272
JBrowse link
familial adenomatous polyposis 4 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 4 ClinVar PMID:20154325 PMID:25741868 PMID:26467025 PMID:27476653 PMID:28492532 More... NCBI chrNW_004955418:29,274,170...29,283,028 JBrowse link
G Msh3 mutS homolog 3 ISO ClinVar Annotator: match by term: Familial adenomatous polyposis 4 | ClinVar Annotator: match by term: MSH3-related attenuated familial adenomatous polyposis OMIM
ClinVar
PMID:8782829 PMID:9536098 PMID:11470537 PMID:16199547 PMID:17576681 More... NCBI chrNW_004955418:29,149,595...29,274,067
Ensembl chrNW_004955418:29,150,085...29,274,437
JBrowse link
Gardner Syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Gardner syndrome ClinVar PMID:1316610 PMID:1651563 PMID:2164769 PMID:2478327 PMID:7485167 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
hereditary desmoid disease term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Desmoid disease, hereditary | ClinVar Annotator: match by term: Desmoid tumor caused by somatic mutation OMIM
ClinVar
PMID:1316610 PMID:1324223 PMID:1338764 PMID:1944466 PMID:2068566 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Desmoid tumor caused by somatic mutation ClinVar PMID:9500465 PMID:9927029 PMID:10398436 PMID:10435629 PMID:10655994 More... NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
hereditary mixed polyposis syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist ISO ClinVar Annotator: match by term: Hereditary mixed polyposis syndrome ClinVar PMID:33208383 NCBI chrNW_004955416:1,812,725...1,825,528
Ensembl chrNW_004955416:1,812,676...1,826,271
JBrowse link
G Scg5 secretogranin V ISO ClinVar Annotator: match by term: Hereditary mixed polyposis syndrome ClinVar PMID:25741868 NCBI chrNW_004955416:1,867,848...1,914,505
Ensembl chrNW_004955416:1,866,997...1,914,640
JBrowse link
hereditary mixed polyposis syndrome 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: Polyposis syndrome, hereditary mixed, 1 ClinVar NCBI chrNW_004955451:16,819,463...16,870,780
Ensembl chrNW_004955451:16,819,023...16,855,528
JBrowse link
G Brca2 BRCA2 DNA repair associated ISO ClinVar Annotator: match by term: Polyposis syndrome, hereditary mixed, 1 ClinVar NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Ctnna1 catenin alpha 1 ISO ClinVar Annotator: match by term: Polyposis syndrome, hereditary mixed, 1 ClinVar PMID:28492532 PMID:32051609 PMID:34425242 NCBI chrNW_004955418:1,592,555...1,754,423
Ensembl chrNW_004955418:1,592,229...1,754,689
JBrowse link
G Scg5 secretogranin V ISO ClinVar Annotator: match by term: Polyposis syndrome, hereditary mixed, 1 ClinVar PMID:22561515 NCBI chrNW_004955416:1,867,848...1,914,505
Ensembl chrNW_004955416:1,866,997...1,914,640
JBrowse link
hereditary mixed polyposis syndrome 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO ClinVar Annotator: match by term: Polyposis syndrome, hereditary mixed, 2 OMIM
ClinVar
PMID:2658044 PMID:9536098 PMID:10881198 PMID:11536076 PMID:12417513 More... NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312
JBrowse link
hereditary nonpolyposis colorectal cancer type 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epm2aip1 EPM2A interacting protein 1 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 2 ClinVar PMID:28492532 NCBI chrNW_004955421:3,882,486...3,889,851
Ensembl chrNW_004955421:3,888,007...3,889,833
JBrowse link
G Lrrfip2 LRR binding FLII interacting protein 2 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 2 ClinVar PMID:21785361 PMID:25741868 NCBI chrNW_004955421:3,938,054...4,066,701
Ensembl chrNW_004955421:3,938,054...4,066,060
JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: COLON CANCER, FAMILIAL NONPOLYPOSIS, TYPE 2 | ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 2 | ClinVar Annotator: match by term: Lynch syndrome II | ClinVar Annotator: match by term: MLH1-related condition OMIM
ClinVar
PMID:212891 PMID:661956 PMID:1749856 PMID:1756143 PMID:1856120 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
hereditary nonpolyposis colorectal cancer type 4 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 4 | ClinVar Annotator: match by term: Lynch syndrome 4 OMIM
ClinVar
PMID:187425 PMID:216319 PMID:285143 PMID:572224 PMID:663563 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Rb1 RB transcriptional corepressor 1 ISO ClinVar Annotator: match by term: Lynch syndrome 4 ClinVar PMID:7795591 PMID:12541220 PMID:14722923 PMID:15884040 PMID:16199547 More... NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576
JBrowse link
hereditary nonpolyposis colorectal cancer type 5 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo11 F-box protein 11 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 5 ClinVar PMID:19250818 PMID:24689082 PMID:25741868 PMID:26467025 PMID:28492532 NCBI chrNW_004955441:14,471,283...14,495,508
Ensembl chrNW_004955441:14,471,283...14,553,916
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 5 OMIM
ClinVar
PMID:183784 PMID:183865 PMID:277857 PMID:551112 PMID:580251 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 5 ClinVar PMID:17016615 PMID:20186688 PMID:22290698 PMID:25741868 PMID:25980754 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
hereditary nonpolyposis colorectal cancer type 6 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfbr2 transforming growth factor beta receptor 2 ISO ClinVar Annotator: match by term: COLON CANCER, HEREDITARY NONPOLYPOSIS, TYPE 6 | ClinVar Annotator: match by term: Colon cancer, hereditary nonpolyposis, type 6 | ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 6 OMIM
ClinVar
PMID:9395234 PMID:9536098 PMID:9590282 PMID:9927040 PMID:11212236 More... NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
hereditary nonpolyposis colorectal cancer type 7 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arel1 apoptosis resistant E3 ubiquitin protein ligase 1 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 7 ClinVar PMID:12702580 PMID:17656264 PMID:22290698 PMID:25741868 PMID:25927356 More... NCBI chrNW_004955523:818,535...874,189
Ensembl chrNW_004955523:818,535...874,189
JBrowse link
G Eif2b2 eukaryotic translation initiation factor 2B subunit beta ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 7 ClinVar NCBI chrNW_004955523:553,356...559,376
Ensembl chrNW_004955523:553,356...559,376
JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 7 ClinVar
OMIM
PMID:9536098 PMID:11586295 PMID:12702580 PMID:12800209 PMID:16199547 More... NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
hereditary nonpolyposis colorectal cancer type 8 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary nonpolyposis, type 8 OMIM
ClinVar
PMID:16951683 PMID:19098912 PMID:23462293 PMID:24033266 PMID:24142340 More... NCBI chrNW_004955441:14,155,084...14,167,584
Ensembl chrNW_004955441:14,155,082...14,169,161
JBrowse link
Lynch syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcg5 ATP binding cassette subfamily G member 5 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,964,588...10,987,771
Ensembl chrNW_004955441:10,964,858...10,986,967
JBrowse link
G Abcg8 ATP binding cassette subfamily G member 8 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,982,307...11,004,789
Ensembl chrNW_004955441:10,982,307...11,009,116
JBrowse link
G Acvr2a activin A receptor type 2A ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955440:13,849,926...13,931,374
Ensembl chrNW_004955440:13,849,926...13,931,374
JBrowse link
G Aimp2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:18602922 PMID:18809606 PMID:20205264 PMID:21376568 PMID:24068316 More... NCBI chrNW_004955460:13,754,487...13,762,726
Ensembl chrNW_004955460:13,754,487...13,762,726
JBrowse link
G Apc APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:7661930 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Arhgef33 Rho guanine nucleotide exchange factor 33 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,553,460...6,638,776
Ensembl chrNW_004955441:6,581,454...6,636,828
JBrowse link
G Aste1 asteroid homolog 1 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955501:7,373,713...7,383,092 JBrowse link
G Atl2 atlastin GTPase 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,004,209...6,034,484
Ensembl chrNW_004955441:6,004,209...6,034,476
JBrowse link
G Atp6v1e2 ATPase H+ transporting V1 subunit E2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,432,951...13,458,467
Ensembl chrNW_004955441:13,432,951...13,458,467
JBrowse link
G Brca2 BRCA2 DNA repair associated ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
JBrowse link
G Ca12 carbonic anhydrase 12 ISO protein:decreased expression:colorectum RGD PMID:17855694 RGD:155226867 NCBI chrNW_004955450:11,927,730...11,975,553
Ensembl chrNW_004955450:11,943,340...11,975,928
JBrowse link
G Ca2 carbonic anhydrase 2 ISO protein:decreased expression:colorectum RGD PMID:17855694 RGD:155226867 NCBI chrNW_004955417:3,388,110...3,402,798
Ensembl chrNW_004955417:3,386,087...3,402,363
JBrowse link
G Ca9 carbonic anhydrase 9 ISO protein:increased expression:colorectum RGD PMID:17855694 RGD:155226867 NCBI chrNW_004955472:619,084...625,570
Ensembl chrNW_004955472:619,245...625,051
JBrowse link
G Calm2 calmodulin 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,973,147...13,988,665 JBrowse link
G Camkmt calmodulin-lysine N-methyltransferase ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:11,453,939...11,830,893
Ensembl chrNW_004955441:11,454,345...11,825,211
JBrowse link
G Ccz1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:10037723 PMID:16338176 PMID:20533529 PMID:21618646 PMID:24440087 More... NCBI chrNW_004955460:13,842,679...13,867,750 JBrowse link
G Cd44 CD44 molecule (IN blood group) ISO CTD Direct Evidence: marker/mechanism CTD PMID:28255344 NCBI chrNW_004955422:11,106,061...11,189,951 JBrowse link
G Cdkl4 cyclin dependent kinase like 4 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,802,669...6,842,378
Ensembl chrNW_004955441:6,802,669...6,841,896
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,525,686...13,533,458
Ensembl chrNW_004955441:13,525,686...13,533,458
JBrowse link
G Dhx57 DExH-box helicase 57 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,479,107...6,541,281
Ensembl chrNW_004955441:6,477,521...6,541,994
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,928,577...10,961,194
Ensembl chrNW_004955441:10,928,343...10,961,194
JBrowse link
G E2f4 E2F transcription factor 4 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955484:9,421,396...9,427,826
Ensembl chrNW_004955484:9,421,396...9,427,825
JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955460:13,723,674...13,754,545
Ensembl chrNW_004955460:13,723,777...13,754,150
JBrowse link
G Eif2b2 eukaryotic translation initiation factor 2B subunit beta ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:25741868 NCBI chrNW_004955523:553,356...559,376
Ensembl chrNW_004955523:553,356...559,376
JBrowse link
G Eml4 EMAP like 4 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:9,633,906...9,715,866
Ensembl chrNW_004955441:9,640,899...9,713,596
JBrowse link
G Epas1 endothelial PAS domain protein 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,244,626...13,328,220
Ensembl chrNW_004955441:13,244,626...13,328,369
JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:9536098 PMID:9843200 PMID:11830542 PMID:11857745 PMID:12373605 More... NCBI chrNW_004955441:14,155,084...14,167,584
Ensembl chrNW_004955441:14,155,082...14,169,161
JBrowse link
G Epm2aip1 EPM2A interacting protein 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:14635101 PMID:15713769 PMID:15942939 PMID:15949572 PMID:16143124 More... NCBI chrNW_004955421:3,882,486...3,889,851
Ensembl chrNW_004955421:3,888,007...3,889,833
JBrowse link
G Fancm FA complementation group M ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma ClinVar PMID:17289582 PMID:18174376 PMID:19379763 PMID:23409019 PMID:23932590 More... NCBI chrNW_004955409:16,751,658...16,809,352 JBrowse link
G Fbxo11 F-box protein 11 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:18269114 PMID:19250818 PMID:24323032 PMID:24362816 PMID:24689082 More... NCBI chrNW_004955441:14,471,283...14,495,508
Ensembl chrNW_004955441:14,471,283...14,553,916
JBrowse link
G Galm galactose mutarotase ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,330,520...6,399,522
Ensembl chrNW_004955441:6,330,410...6,403,219
JBrowse link
G Gemin6 gem nuclear organelle associated protein 6 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,456,482...6,461,027
Ensembl chrNW_004955441:6,456,537...6,461,027
JBrowse link
G Haao 3-hydroxyanthranilate 3,4-dioxygenase ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,114,863...10,128,948
Ensembl chrNW_004955441:10,110,380...10,129,015
JBrowse link
G Hnrnpll heterogeneous nuclear ribonucleoprotein L like ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,229,692...6,269,051
Ensembl chrNW_004955441:6,229,692...6,257,214
JBrowse link
G Kcng3 potassium voltage-gated channel modifier subfamily G member 3 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:9,813,391...9,859,960
Ensembl chrNW_004955441:9,816,209...9,860,707
JBrowse link
G Kcnk12 potassium two pore domain channel subfamily K member 12 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:18269114 PMID:24323032 PMID:24362816 PMID:28135145 PMID:28492532 NCBI chrNW_004955441:14,270,030...14,281,639 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758
JBrowse link
G LOC102009223 cytochrome P450 1B1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:5,803,397...5,812,131
Ensembl chrNW_004955441:5,803,032...5,812,131
JBrowse link
G LOC102015775 cytochrome c oxidase subunit 7A-related protein, mitochondrial ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:9,732,168...9,743,052
Ensembl chrNW_004955441:9,733,894...9,743,354
JBrowse link
G Lrpprc leucine rich pentatricopeptide repeat containing ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:11,012,910...11,116,965 JBrowse link
G Lrrfip2 LRR binding FLII interacting protein 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:10422993 PMID:28492532 NCBI chrNW_004955421:3,938,054...4,066,701
Ensembl chrNW_004955421:3,938,054...4,066,060
JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,843,066...6,956,443
Ensembl chrNW_004955441:6,846,719...6,956,418
JBrowse link
G Mcfd2 multiple coagulation factor deficiency 2, ER cargo receptor complex subunit ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,766,683...13,776,305
Ensembl chrNW_004955441:13,764,144...13,777,628
JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar PMID:212891 PMID:1061282 PMID:1749856 PMID:1756143 PMID:1856120 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:11586295 PMID:12800209 PMID:18521850 PMID:19156873 PMID:25637381 More... NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Morn2 MORN repeat containing 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004956800:124...2,031 JBrowse link
G Msh2 mutS homolog 2 onset ISO ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Familial nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
RGD
ClinVar
PMID:187139 PMID:261128 PMID:273149 PMID:439855 PMID:580563 More... RGD:11063948 NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Familial nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Familial nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar PMID:183784 PMID:183865 PMID:216699 PMID:277857 PMID:503524 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Mta3 metastasis associated 1 family member 3 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:9,965,727...10,108,467
Ensembl chrNW_004955441:9,965,500...10,108,467
JBrowse link
G Nr0b2 nuclear receptor subfamily 0 group B member 2 ISO ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:11136233 PMID:20233523 PMID:25741868 PMID:28492532 PMID:33094510 NCBI chrNW_004955452:6,251,047...6,253,541
Ensembl chrNW_004955452:6,250,889...6,254,541
JBrowse link
G Nudc nuclear distribution C, dynein complex regulator ISO ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms
ClinVar PMID:11136233 PMID:20233523 PMID:25741868 PMID:28492532 PMID:33094510 NCBI chrNW_004955452:6,261,500...6,278,393
Ensembl chrNW_004955452:6,261,286...6,278,393
JBrowse link
G Ocm oncomodulin ISO ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:10037723 PMID:16338176 PMID:20533529 PMID:21618646 PMID:24440087 More... NCBI chrNW_004955460:13,876,279...13,880,643 JBrowse link
G Ormdl1 ORMDL sphingolipid biosynthesis regulator 1 ISO ClinVar Annotator: match by term: Lynch syndrome ClinVar NCBI chrNW_004955403:9,100,516...9,113,230
Ensembl chrNW_004955403:9,100,516...9,113,223
JBrowse link
G Pigf phosphatidylinositol glycan anchor biosynthesis class F ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,492,334...13,525,581 JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:9,462,530...9,471,446
Ensembl chrNW_004955441:9,462,530...9,471,446
JBrowse link
G Plekhh2 pleckstrin homology, MyTH4 and FERM domain containing H2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,818,982...10,921,224
Ensembl chrNW_004955441:10,825,499...10,919,901
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:25741868 NCBI chrNW_004955403:9,021,488...9,100,442
Ensembl chrNW_004955403:9,022,078...9,100,442
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal carcinoma | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: APC-mutation negative familial colorectal cancer | ClinVar Annotator: match by term: Hereditary Nonpolyposis Colorectal Cancer Syndrome | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar Annotator: match by term: Colorectal cancer, non-polyposis | ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer | ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome
ClinVar PMID:187425 PMID:216319 PMID:285143 PMID:572224 PMID:663563 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Ppm1b protein phosphatase, Mg2+/Mn2+ dependent 1B ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:11,276,525...11,338,586
Ensembl chrNW_004955441:11,276,525...11,352,095
JBrowse link
G Prepl prolyl endopeptidase like ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:11,418,299...11,453,889
Ensembl chrNW_004955441:11,418,299...11,453,218
JBrowse link
G Prkce protein kinase C epsilon ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:12,642,703...13,142,396
Ensembl chrNW_004955441:12,642,697...13,139,372
JBrowse link
G Rhoq ras homolog family member Q ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,457,757...13,495,221
Ensembl chrNW_004955441:13,457,757...13,495,221
JBrowse link
G Rmdn2 regulator of microtubule dynamics 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:5,710,487...5,776,351
Ensembl chrNW_004955441:5,716,934...5,774,668
JBrowse link
G Rnasel ribonuclease L onset ISO DNA:substitution:cds:amino acid R462G RGD PMID:16054567 RGD:2292000 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052
JBrowse link
G Rnaset2 ribonuclease T2 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955439:15,098,210...15,122,015
Ensembl chrNW_004955439:15,098,114...15,125,413
JBrowse link
G Rps20 ribosomal protein S20 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colon cancer ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955454:15,151,065...15,152,301
Ensembl chrNW_004955454:15,151,065...15,152,301
JBrowse link
G Rsph10b radial spoke head 10 homolog B ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:10037723 PMID:16338176 PMID:20533529 PMID:21618646 PMID:24440087 More... NCBI chrNW_004955460:13,791,666...13,840,754 JBrowse link
G Six2 SIX homeobox 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214
JBrowse link
G Six3 SIX homeobox 3 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466
JBrowse link
G Slc3a1 solute carrier family 3 member 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:11,381,390...11,418,193
Ensembl chrNW_004955441:11,381,441...11,418,025
JBrowse link
G Slc8a1 solute carrier family 8 member A1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:7,653,107...8,037,784
Ensembl chrNW_004955441:7,656,031...7,957,640
JBrowse link
G Smad2 SMAD family member 2 ISO RGD PMID:10819637 RGD:1599900 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844
JBrowse link
G Smad3 SMAD family member 3 ISO RGD PMID:10819637 RGD:1599900 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Smad4 SMAD family member 4 ISO RGD PMID:10819637 RGD:1599900 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Socs5 suppressor of cytokine signaling 5 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,593,342...13,657,389
Ensembl chrNW_004955441:13,593,342...13,657,389
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,649,895...6,724,271
Ensembl chrNW_004955441:6,646,385...6,713,028
JBrowse link
G Srbd1 S1 RNA binding domain 1 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:12,374,940...12,642,295
Ensembl chrNW_004955441:12,375,565...12,606,923
JBrowse link
G Srsf7 serine and arginine rich splicing factor 7 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:6,416,709...6,423,185
Ensembl chrNW_004955441:6,416,952...6,423,074
JBrowse link
G Stpg4 sperm-tail PG-rich repeat containing 4 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms | ClinVar Annotator: match by term: Lynch syndrome ClinVar PMID:28492532 PMID:30374176 NCBI chrNW_004955441:13,926,926...13,969,316
Ensembl chrNW_004955441:13,925,403...13,969,052
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955487:5,359,132...5,394,564
Ensembl chrNW_004955487:5,359,112...5,394,707
JBrowse link
G Tcf4 transcription factor 4 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955402:39,735,596...40,066,151
Ensembl chrNW_004955402:39,735,600...40,066,151
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO RGD PMID:17613544 RGD:2306282 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:25741868 PMID:28492532 PMID:28659821 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Thada THADA armadillo repeat containing ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,471,555...10,792,881
Ensembl chrNW_004955441:10,470,533...10,774,601
JBrowse link
G Thumpd2 THUMP domain containing 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:7,329,468...7,369,957
Ensembl chrNW_004955441:7,329,093...7,369,782
JBrowse link
G Tmem178a transmembrane protein 178A ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:7,296,200...7,309,556
Ensembl chrNW_004955441:7,296,200...7,309,556
JBrowse link
G Tmem247 transmembrane protein 247 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,404,855...13,409,919 JBrowse link
G Trank1 tetratricopeptide repeat and ankyrin repeat containing 1 ISO ClinVar Annotator: match by term: Lynch syndrome ClinVar NCBI chrNW_004955421:3,707,510...3,852,886
Ensembl chrNW_004955421:3,707,510...3,853,868
JBrowse link
G Ttc7a tetratricopeptide repeat domain 7A ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:13,804,791...13,915,969
Ensembl chrNW_004955441:13,793,216...13,916,423
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 ISO ClinVar Annotator: match by term: Hereditary nonpolyposis colorectal neoplasms ClinVar PMID:28492532 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
Lynch syndrome 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aimp2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 PMID:36647049 NCBI chrNW_004955460:13,754,487...13,762,726
Ensembl chrNW_004955460:13,754,487...13,762,726
JBrowse link
G Atm ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Ccz1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 PMID:36647049 NCBI chrNW_004955460:13,842,679...13,867,750 JBrowse link
G Chek2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173
JBrowse link
G Eif2ak1 eukaryotic translation initiation factor 2 alpha kinase 1 ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 PMID:36647049 NCBI chrNW_004955460:13,723,674...13,754,545
Ensembl chrNW_004955460:13,723,777...13,754,150
JBrowse link
G Epcam epithelial cell adhesion molecule ISO ClinVar Annotator: match by term: Lynch syndrome 1 | ClinVar Annotator: match by term: Lynch syndrome I ClinVar PMID:24033266 PMID:25741868 PMID:28492532 NCBI chrNW_004955441:14,155,084...14,167,584
Ensembl chrNW_004955441:14,155,082...14,169,161
JBrowse link
G Kcnk12 potassium two pore domain channel subfamily K member 12 ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar NCBI chrNW_004955441:14,270,030...14,281,639 JBrowse link
G Lrrfip2 LRR binding FLII interacting protein 2 ISO ClinVar Annotator: match by term: Lynch syndrome II ClinVar PMID:21785361 NCBI chrNW_004955421:3,938,054...4,066,701
Ensembl chrNW_004955421:3,938,054...4,066,060
JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary, nonpolyposis, type 1 | ClinVar Annotator: match by term: Lynch syndrome 1 | ClinVar Annotator: match by term: Lynch syndrome I | ClinVar Annotator: match by term: Lynch syndrome II ClinVar PMID:661956 PMID:1749856 PMID:1756143 PMID:4063166 PMID:7557107 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Mlh3 mutL homolog 3 ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: COLON CANCER, FAMILIAL NONPOLYPOSIS, TYPE 1 | ClinVar Annotator: match by term: Colorectal cancer, hereditary, nonpolyposis, type 1 | ClinVar Annotator: match by term: Lynch syndrome 1 | ClinVar Annotator: match by term: Lynch syndrome I | ClinVar Annotator: match by term: Lynch syndrome II OMIM
ClinVar
PMID:187139 PMID:261128 PMID:273149 PMID:580563 PMID:625353 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Lynch syndrome 1 | ClinVar Annotator: match by term: Lynch syndrome I
ClinVar Annotator: match by term: COLON CANCER, FAMILIAL NONPOLYPOSIS, TYPE 1 | ClinVar Annotator: match by term: Colorectal cancer, hereditary, nonpolyposis, type 1 | ClinVar Annotator: match by term: Lynch syndrome 1 | ClinVar Annotator: match by term: Lynch syndrome I
ClinVar PMID:551112 PMID:580251 PMID:1548301 PMID:2059188 PMID:3049887 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Mutyh mutY DNA glycosylase ISO ClinVar Annotator: match by term: Colorectal cancer, hereditary, nonpolyposis, type 1 | ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:11818965 PMID:12606733 PMID:12917422 PMID:15931596 PMID:15987719 More... NCBI chrNW_004955464:12,927,669...12,936,894
Ensembl chrNW_004955464:12,933,497...12,938,468
JBrowse link
G Ocm oncomodulin ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 PMID:36647049 NCBI chrNW_004955460:13,876,279...13,880,643 JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:24728327 PMID:25741868 PMID:28492532 NCBI chrNW_004955403:9,021,488...9,100,442
Ensembl chrNW_004955403:9,022,078...9,100,442
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Lynch syndrome 1
ClinVar Annotator: match by term: Lynch syndrome 1 | ClinVar Annotator: match by term: Lynch syndrome I
ClinVar PMID:7628019 PMID:7632227 PMID:7661930 PMID:7704024 PMID:8072530 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Rad51d RAD51 paralog D ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:21822267 PMID:25741868 PMID:26261251 PMID:26467025 PMID:28492532 More... NCBI chrNW_004955481:9,795,102...9,810,426
Ensembl chrNW_004955481:9,795,102...9,810,426
JBrowse link
G Rsph10b radial spoke head 10 homolog B ISO ClinVar Annotator: match by term: Lynch syndrome 1 ClinVar PMID:25741868 PMID:36647049 NCBI chrNW_004955460:13,791,666...13,840,754 JBrowse link
mismatch repair cancer syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:7661930 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Aste1 asteroid homolog 1 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955501:7,373,713...7,383,092 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: MMR DEFICIENCY ClinVar PMID:8872463 PMID:9377556 PMID:9927033 PMID:10422993 PMID:10713887 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: MMR DEFICIENCY ClinVar PMID:6096739 PMID:8566964 PMID:8592341 PMID:9288790 PMID:10080150 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: MMR DEFICIENCY ClinVar PMID:10508506 PMID:10537275 PMID:10612827 PMID:11470537 PMID:11807791 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Constitutional mismatch repair deficiency syndrome | ClinVar Annotator: match by term: Turcot syndrome
ClinVar Annotator: match by term: MMR DEFICIENCY
ClinVar PMID:2440087 PMID:6144131 PMID:7628019 PMID:7629132 PMID:7632227 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit ISO DNA:SNP:CDS:rs4077170 (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955482:373,467...418,000
Ensembl chrNW_004955482:373,555...417,266
JBrowse link
G Rnaset2 ribonuclease T2 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955439:15,098,210...15,122,015
Ensembl chrNW_004955439:15,098,114...15,125,413
JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955487:5,359,132...5,394,564
Ensembl chrNW_004955487:5,359,112...5,394,707
JBrowse link
G Tfdp1 transcription factor Dp-1 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955404:371,905...408,441
Ensembl chrNW_004955404:368,793...408,930
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Tp53 tumor protein p53 ISO DNA:mutations:cds: (human) RGD PMID:28218421 RGD:153297765 NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
JBrowse link
Mismatch Repair Cancer Syndrome 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Mismatch repair cancer syndrome 1
ClinVar Annotator: match by term: MISMATCH REPAIR CANCER SYNDROME 1 | ClinVar Annotator: match by term: Mismatch repair cancer syndrome 1
OMIM
ClinVar
PMID:7757073 PMID:08808596 PMID:8809606 PMID:8872463 PMID:8880570 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: MISMATCH REPAIR CANCER SYNDROME 1 | ClinVar Annotator: match by term: Mismatch repair cancer syndrome 1 ClinVar PMID:6096739 PMID:8261515 PMID:8566964 PMID:8592341 PMID:9288790 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: MISMATCH REPAIR CANCER SYNDROME 1 | ClinVar Annotator: match by term: Mismatch repair cancer syndrome 1 ClinVar PMID:10508506 PMID:10537275 PMID:10612827 PMID:11470537 PMID:11807791 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: BTP1 SYNDROME | ClinVar Annotator: match by term: Mismatch repair cancer syndrome 1 ClinVar PMID:2440087 PMID:6144131 PMID:7628019 PMID:7629132 PMID:7632227 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
Mismatch Repair Cancer Syndrome 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Mismatch repair cancer syndrome 2 OMIM
ClinVar
PMID:8521394 PMID:9718327 PMID:10190329 PMID:10196371 PMID:10874307 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
Mismatch Repair Cancer Syndrome 3 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Mismatch repair cancer syndrome 3 OMIM
ClinVar
PMID:2059188 PMID:5559809 PMID:9307272 PMID:9929971 PMID:10471527 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
Mismatch Repair Cancer Syndrome 4 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pms2 PMS1 homolog 2, mismatch repair system component ISO ClinVar Annotator: match by term: Mismatch repair cancer syndrome 4 | ClinVar Annotator: match by term: PMS2-related condition OMIM
ClinVar
PMID:2440087 PMID:7628019 PMID:7629132 PMID:7632227 PMID:7661930 More... NCBI chrNW_004955460:13,762,854...13,791,462 JBrowse link
Muir-Torre syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fhit fragile histidine triad diadenosine triphosphatase ISO OMIM:158320 MouseDO NCBI chrNW_004955430:221,518...508,094 JBrowse link
G Mlh1 mutL homolog 1 ISO ClinVar Annotator: match by term: Cutaneous sebaceous neoplasms and keratoacanthomas multiple with gastrointestinal and other carcinomas | ClinVar Annotator: match by term: Muir-Torré syndrome OMIM
ClinVar
PMID:2414824 PMID:4063166 PMID:7705822 PMID:8198129 PMID:8571956 More... NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Cutaneous sebaceous neoplasms and keratoacanthomas multiple with gastrointestinal and other carcinomas | ClinVar Annotator: match by term: Muir-Torré syndrome OMIM
ClinVar
PMID:6096739 PMID:7585065 PMID:7713503 PMID:8566964 PMID:8592341 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
Oligodontia-Colorectal Cancer Syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 ISO ClinVar Annotator: match by term: AXIN2-related attenuated familial adenomatous polyposis | ClinVar Annotator: match by term: Oligodontia-colorectal cancer syndrome | ClinVar Annotator: match by term: TOOTH AGENESIS-COLORECTAL CANCER SYNDROME OMIM
ClinVar
PMID:9536098 PMID:10330403 PMID:11017067 PMID:12101426 PMID:15042511 More... NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Gna13 G protein subunit alpha 13 ISO ClinVar Annotator: match by term: Oligodontia-colorectal cancer syndrome ClinVar PMID:28492532 NCBI chrNW_004955478:4,510,932...4,552,646
Ensembl chrNW_004955478:4,515,751...4,552,784
JBrowse link
G Rgs9 regulator of G protein signaling 9 ISO ClinVar Annotator: match by term: Oligodontia-colorectal cancer syndrome ClinVar PMID:28492532 NCBI chrNW_004955478:4,614,730...4,683,152
Ensembl chrNW_004955478:4,614,701...4,683,167
JBrowse link
rectal benign neoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:8071957 PMID:11766074 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Cdkn1b cyclin dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:15525823 NCBI chrNW_004955413:9,615,542...9,620,542
Ensembl chrNW_004955413:9,615,542...9,620,542
JBrowse link
G Egfr epidermal growth factor receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16839708 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:21975339 RGD:13210759 NCBI chrNW_004955523:307,181...310,728
Ensembl chrNW_004955523:305,728...310,728
JBrowse link
G Mapk8 mitogen-activated protein kinase 8 ISO DNA:SNP: :rs10857561 (human)
DNA:SNP: :rs10508901 (human)
RGD PMID:22199996 PMID:23027623 RGD:13217410 RGD:13217411 NCBI chrNW_004955556:1,593,552...1,705,543
Ensembl chrNW_004955556:1,593,494...1,665,784
JBrowse link
G Mcc MCC regulator of WNT signaling pathway ISO CTD Direct Evidence: marker/mechanism CTD PMID:8071957 NCBI chrNW_004955408:32,928,519...33,265,049
Ensembl chrNW_004955408:32,928,519...33,264,727
JBrowse link
G Mthfr methylenetetrahydrofolate reductase severity ISO DNA:transition:cds:g.677C>T (human) RGD PMID:21865946 RGD:6893664 NCBI chrNW_004955486:2,096,379...2,112,240
Ensembl chrNW_004955486:2,096,379...2,112,240
JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming ISO CTD Direct Evidence: marker/mechanism CTD PMID:12468628 NCBI chrNW_004955476:11,108,826...11,135,697
Ensembl chrNW_004955476:11,108,826...11,135,697
JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism CTD PMID:3102434 NCBI chrNW_004955435:18,001,517...18,009,105
Ensembl chrNW_004955435:18,001,517...18,009,103
JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha susceptibility ISO DNA:SNP:intron: (rs7651265) (human) RGD PMID:20622004 RGD:5685669 NCBI chrNW_004955420:8,355,415...8,427,024
Ensembl chrNW_004955420:8,356,353...8,427,024
JBrowse link
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta disease_progression ISO RGD PMID:25473181 RGD:13432031 NCBI chrNW_004955501:251,829...381,255
Ensembl chrNW_004955501:259,645...379,909
JBrowse link
G Pmepa1 prostate transmembrane protein, androgen induced 1 ISO mRNA:increased expression:rectum RGD PMID:11568975 RGD:2315108 NCBI chrNW_004955445:1,837,084...1,847,214
Ensembl chrNW_004955445:1,837,062...1,847,214
JBrowse link
G Tyms thymidylate synthetase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16931962 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
G Wrap53 WD repeat containing antisense to TP53 treatment ISO RGD PMID:22805008 RGD:21081677 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
rectum adenocarcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Rectum adenocarcinoma ClinVar PMID:24033266 PMID:25741868 PMID:26530882 PMID:28195569 PMID:28492532 More... NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Birc2 baculoviral IAP repeat containing 2 disease_progression ISO mRNA:increased expression:rectum (human) RGD PMID:31964418 RGD:153344516 NCBI chrNW_004955412:5,658,322...5,685,628
Ensembl chrNW_004955412:5,659,478...5,685,114
JBrowse link
G Birc3 baculoviral IAP repeat containing 3 ameliorates ISO mRNA:increased expression:rectum (human) RGD PMID:31964418 RGD:153344516 NCBI chrNW_004955412:5,624,865...5,643,520
Ensembl chrNW_004955412:5,628,973...5,643,410
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO mRNA:increased expression:rectum (human) RGD PMID:28486105 RGD:153323299 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225
JBrowse link
G Eef2 eukaryotic translation elongation factor 2 ISO protein:increased expression:rectum (human) RGD PMID:19360331 RGD:153298969 NCBI chrNW_004955495:4,800,103...4,807,714
Ensembl chrNW_004955495:4,799,922...4,807,252
JBrowse link
G Kdm6a lysine demethylase 6A exacerbates ISO mRNA:decreased expression:rectum (human) RGD PMID:33174323 RGD:150429730 NCBI chrNW_004955516:3,151,350...3,346,832
Ensembl chrNW_004955516:3,149,948...3,346,832
JBrowse link
G Slc7a5 solute carrier family 7 member 5 treatment ISO RGD PMID:21036745 RGD:151361202 NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO DNA:missense mutation:CDS: (rs2293152) (human) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687
JBrowse link
G Stat4 signal transducer and activator of transcription 4 ISO DNA:SNP:intron: (rs3024861) (human) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955403:8,061,471...8,144,252
Ensembl chrNW_004955403:8,061,471...8,144,276
JBrowse link
G Stat6 signal transducer and activator of transcription 6 ISO DNA:SNP:intron: (rs3024979) RGD PMID:22121102 RGD:153323313 NCBI chrNW_004955458:4,833,417...4,847,956
Ensembl chrNW_004955458:4,833,515...4,843,273
JBrowse link
rectum cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccng2 cyclin G2 ISO mRNA:decreased expression:colon,rectum (human) RGD PMID:27982046 RGD:151361200 NCBI chrNW_004955433:1,799,405...1,807,050
Ensembl chrNW_004955433:1,798,732...1,807,827
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO DNA:missense mutation:CDS p.D140E (rs7479004) (human) RGD PMID:25407497 RGD:153323305 NCBI chrNW_004955413:4,191,619...4,228,225
Ensembl chrNW_004955413:4,191,619...4,228,225
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 exacerbates ISO protein:increased expression:rectum (human) RGD PMID:24375277 RGD:152023614 NCBI chrNW_004955440:3,456,165...3,460,024
Ensembl chrNW_004955440:3,455,153...3,460,109
JBrowse link
G Gpx3 glutathione peroxidase 3 susceptibility ISO DNA:SNPs: (rs3828599, rs736775, rs8177447) (human) RGD PMID:22371331 RGD:151665750 NCBI chrNW_004955408:2,622,162...2,629,088
Ensembl chrNW_004955408:2,622,741...2,629,032
JBrowse link
G Il6 interleukin 6 treatment ISO RGD PMID:28272402 RGD:14975288 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G LOC102013768 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial susceptibility ISO DNA:SNP:intron: (rs6022999) (human) RGD PMID:31740231 RGD:151665338 NCBI chrNW_004955445:4,874,583...4,891,723
Ensembl chrNW_004955445:4,873,942...4,891,780
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 susceptibility
treatment
ISO DNA:SNP:intron: (rs43184) (human)
DNA:SNP:intron: (rs2548663) (human)
RGD PMID:23027623 PMID:23859041 RGD:13217411 RGD:150573807 NCBI chrNW_004955446:11,022,091...11,090,136
Ensembl chrNW_004955446:11,021,971...11,090,136
JBrowse link
G Mapk14 mitogen-activated protein kinase 14 susceptibility ISO DNA:SNPs:introns: (rs851011, rs851006) (human) RGD PMID:23859041 RGD:150573807 NCBI chrNW_004955437:3,836,331...3,884,083
Ensembl chrNW_004955437:3,838,232...3,884,083
JBrowse link
G Nbn nibrin susceptibility ISO DNA:SNP:3'utr: (rs14448) (human) RGD PMID:26735576 RGD:151361212 NCBI chrNW_004955417:6,840,916...6,880,479
Ensembl chrNW_004955417:6,839,312...6,880,133
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 susceptibility ISO DNA:SNP:3'utr: (rs1051677) (human) RGD PMID:26735576 RGD:151361212 NCBI chrNW_004955453:16,967,453...17,054,634
Ensembl chrNW_004955453:16,967,453...17,054,634
JBrowse link
Sessile Serrated Polyposis Cancer Syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf43 ring finger protein 43 ISO ClinVar Annotator: match by term: RNF43-related condition | ClinVar Annotator: match by term: Sessile serrated polyposis cancer syndrome OMIM
ClinVar
PMID:22552244 PMID:24512911 PMID:25741868 PMID:27081527 PMID:27582512 More... NCBI chrNW_004955451:4,604,985...4,680,762
Ensembl chrNW_004955451:4,604,985...4,680,762
JBrowse link
sigmoid colon cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Sigmoid colon cancer ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Sigmoid colon cancer ClinVar PMID:10495924 PMID:12658575 PMID:15849733 PMID:17312306 PMID:18566915 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Sigmoid colon cancer ClinVar PMID:9354786 PMID:12376507 PMID:18809606 PMID:19924528 PMID:20176959 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link
sigmoid neoplasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway ISO ClinVar Annotator: match by term: Sigmoid colon cancer ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004955418:2,567,804...2,675,062
Ensembl chrNW_004955418:2,566,975...2,674,832
JBrowse link
G Msh2 mutS homolog 2 ISO ClinVar Annotator: match by term: Sigmoid colon cancer ClinVar PMID:10495924 PMID:12658575 PMID:15849733 PMID:17312306 PMID:18566915 More... NCBI chrNW_004955441:14,188,315...14,247,608
Ensembl chrNW_004955441:14,187,805...14,247,698
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Sigmoid colon cancer ClinVar PMID:9354786 PMID:12376507 PMID:18809606 PMID:19924528 PMID:20176959 More... NCBI chrNW_004955441:14,451,207...14,471,316
Ensembl chrNW_004955441:14,451,307...14,471,227
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 16063
    disease of anatomical entity 13809
      gastrointestinal system disease 5942
        intestinal disease 2697
          rectal disease 1814
            Colorectal Neoplasms 1581
              Colonic Neoplasms + 357
              Lynch syndrome + 97
              colorectal adenoma 24
              colorectal cancer + 902
              familial adenomatous polyposis + 341
              large bowel leiomyoma + 0
              mismatch repair cancer syndrome + 12
              rectal benign neoplasm + 15
Path 2
Term Annotations click to browse term
  disease 16063
    disease of anatomical entity 13809
      gastrointestinal system disease 5942
        Digestive System Neoplasms 3392
          Gastrointestinal Neoplasms 3283
            Intestinal Neoplasms 1600
              Colorectal Neoplasms 1581
                Colonic Neoplasms + 357
                Lynch syndrome + 97
                colorectal adenoma 24
                colorectal cancer + 902
                familial adenomatous polyposis + 341
                large bowel leiomyoma + 0
                mismatch repair cancer syndrome + 12
                rectal benign neoplasm + 15
paths to the root