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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Cestode Infections
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Accession:DOID:9006970 term browser browse the term
Definition:Infections with true tapeworms of the helminth subclass CESTODA.
Synonyms:exact_synonym: Bertielliases;   Bertielliasis;   Cenuriases;   Cenuriasis;   Cestode Infection;   Coenuriases;   Coenuriasis;   Dipylidiases;   Dipylidiasis;   Raillietiniases;   Raillietiniasis;   Tapeworm Infection;   Tapeworm Infections
 primary_id: MESH:D002590;   RDO:0005178
For additional species annotation, visit the Alliance of Genome Resources.



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Cestode Infections term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Muc2 mucin 2, oligomeric mucus/gel-forming IEP RGD PMID:17187651 RGD:7349350 NCBI chr 1:196,796,257...196,831,740
Ensembl chr 1:196,799,517...196,831,756
JBrowse link
alveolar echinococcosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule treatment ISO RGD PMID:30315719 RGD:41410787 NCBI chr 1:227,116,627...227,137,379
Ensembl chr 1:227,116,649...227,134,450
JBrowse link
G RT1-Bb RT1 class II, locus Bb disease_progression ISO DNA:polymorphism: :HLA-DQB1*02(human) RGD PMID:9756400 RGD:36174003 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO DNA:polymorphisms: :HLA-DRB1*03, DRB1*11(human) RGD PMID:9756400 RGD:36174003 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258
JBrowse link
G Tlr2 toll-like receptor 2 ISO mRNA:increased expression:PBMC RGD PMID:30141853 RGD:15090814 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
cystic echinococcosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il4 interleukin 4 treatment ISO RGD PMID:25726962 RGD:14696685 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G RT1-Bb RT1 class II, locus Bb ISO DNA:polymorphisms: :HLA- DQB1*0.9, DQB1*02(human) RGD PMID:22308705 RGD:36174019 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597
JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO DNA:polymorphism: :HLA-DRB1*03, DRB1*07(human) RGD PMID:22308705 RGD:36174019 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258
JBrowse link
G Tlr2 toll-like receptor 2 disease_progression ISO DNA:mutation:cds:Arg753Gln(human)
mRNA:increased expression:peripheral blood monocyte:
RGD PMID:31437685 PMID:21923667 RGD:15090825, RGD:18182935 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Tlr4 toll-like receptor 4 ISO mRNA:increased expression:peripheral blood monocyte: RGD PMID:21923667 RGD:18182935 NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
echinococcosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abo ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase ISO RGD PMID:2142987 RGD:5128834 NCBI chr 3:10,162,087...10,182,835
Ensembl chr 3:10,162,096...10,191,423
JBrowse link
G Alb albumin ISO CTD Direct Evidence: marker/mechanism CTD PMID:24270252 NCBI chr14:17,607,397...17,622,814
Ensembl chr14:17,607,381...17,622,836
JBrowse link
G Hbb hemoglobin subunit beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:24270252 NCBI chr 1:158,250,421...158,251,832
Ensembl chr 1:158,120,200...158,252,012
JBrowse link
G Il5 interleukin 5 ISO mRNA: increased expression: : peritoneal lavage cells RGD PMID:21912714 RGD:5687176 NCBI chr10:37,874,342...37,877,213
Ensembl chr10:37,874,342...37,877,213
JBrowse link
G Tf transferrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:24270252 NCBI chr 8:103,789,780...103,816,487
Ensembl chr 8:103,767,995...103,816,511
JBrowse link
Hepatic Echinococcosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd274 CD274 molecule ISO mRNA, protein:increased expression:liver RGD PMID:25907244 RGD:41412175 NCBI chr 1:227,116,627...227,137,379
Ensembl chr 1:227,116,649...227,134,450
JBrowse link
G Igf2 insulin-like growth factor 2 ISO protein:decreased expression:serum RGD PMID:12927688 RGD:5509967 NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018
JBrowse link
G Pdcd1 programmed cell death 1 ISO mRNA, protein:increased expression:liver RGD PMID:25907244 RGD:41412175 NCBI chr 9:94,418,786...94,431,945
Ensembl chr 9:94,418,791...94,431,937
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17435
    disease by infectious agent 1933
      parasitic infectious disease 313
        parasitic helminthiasis infectious disease 82
          Cestode Infections 14
            diphyllobothriasis + 0
            echinococcosis + 13
            hymenolepiasis 0
            mesocestoidiasis 0
            monieziasis 0
            taeniasis + 0
paths to the root