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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Clostridium Infections
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Accession:DOID:9006732 term browser browse the term
Definition:Infections with bacteria of the genus CLOSTRIDIUM.
Synonyms:exact_synonym: Clostridium Infection;   Clostridium infectious disease;   commensal Clostridium infectious disease
 primary_id: MESH:D003015
 xref: EFO:1000874
For additional species annotation, visit the Alliance of Genome Resources.



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Clostridium Infections term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il27 interleukin 27 ISO associated with diarrhea;protein:increased expression:blood��serum, feces (human) RGD PMID:29140433 RGD:126790495 NCBI chr 1:181,173,108...181,178,720
Ensembl chr 1:181,173,372...181,178,582
JBrowse link
G Marco macrophage receptor with collagenous structure exacerbates ISO RGD PMID:20810988 RGD:41412193 NCBI chr13:31,616,278...31,648,521
Ensembl chr13:31,616,278...31,648,521
JBrowse link
Clostridium difficile colitis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il23a interleukin 23 subunit alpha severity ISO RGD PMID:26455347 RGD:11097134 NCBI chr 7:721,809...723,923
Ensembl chr 7:721,809...723,923
JBrowse link
G Il33 interleukin 33 treatment
severity
ISO RGD PMID:32156806 PMID:32156806 RGD:40400894, RGD:40400894 NCBI chr 1:227,701,964...227,736,374
Ensembl chr 1:227,721,435...227,736,373
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18156
    disease by infectious agent 2134
      Bacterial Infections and Mycoses 992
        bacterial infectious disease 758
          Gram-Positive Bacterial Infections 359
            Clostridium Infections 4
              Clostridium difficile colitis 2
              Enterotoxemia 0
              botulism + 0
              gas gangrene 0
              tetanus + 0
paths to the root