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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Staphylococcal Skin Infections
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Accession:DOID:9005966 term browser browse the term
Definition:Infections to the skin caused by bacteria of the genus STAPHYLOCOCCUS.
Synonyms:exact_synonym: Skin Staphylococcal Disease;   Skin Staphylococcal Diseases;   Skin Staphylococcal Infection
 primary_id: MESH:D013207;   RDO:0005639
 xref: EFO:1001849
For additional species annotation, visit the Alliance of Genome Resources.



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Staphylococcal Skin Infections term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il17a interleukin 17A ISO RGD PMID:24614654 RGD:9068425 NCBI chr 9:23,144,402...23,147,889
Ensembl chr 9:23,144,402...23,147,889
JBrowse link
G Il18 interleukin 18 treatment ISO RGD PMID:21536791 RGD:8655921 NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
JBrowse link
G Il33 interleukin 33 treatment ISO mRNA,protein:increased expression:skin RGD PMID:23892028 PMID:23892028 RGD:40400893, RGD:40400893 NCBI chr 1:227,701,964...227,736,374
Ensembl chr 1:227,721,435...227,736,373
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 ameliorates ISO RGD PMID:27524612 RGD:127229915 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121
JBrowse link
G Serpinf1 serpin family F member 1 severity ISO RGD PMID:25515118 RGD:36174009 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
Furunculosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asip agouti signaling protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:32937126 NCBI chr 3:143,473,584...143,561,170
Ensembl chr 3:143,555,696...143,561,171
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18215
    disease by infectious agent 2144
      Bacterial Infections and Mycoses 999
        bacterial infectious disease 765
          Bacterial Skin Diseases 23
            Staphylococcal Skin Infections 6
              Furunculosis + 1
              Ritter's disease 0
              impetigo + 0
Path 2
Term Annotations click to browse term
  disease 18215
    disease of anatomical entity 17576
      nervous system disease 13207
        sensory system disease 6435
          skin disease 3794
            Infectious Skin Diseases 364
              Bacterial Skin Diseases 23
                Staphylococcal Skin Infections 6
                  Furunculosis + 1
                  Ritter's disease 0
                  impetigo + 0
paths to the root