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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Nevi and Melanomas
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Accession:DOID:9005825 term browser browse the term
Definition:A collective term for the various types of nevi and melanomas.
Synonyms:primary_id: MESH:D018326;   RDO:0006092
For additional species annotation, visit the Alliance of Genome Resources.


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Nevi and Melanomas term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bap1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21874003 NCBI chrNW_004936473:3,239,009...3,247,806 JBrowse link
amelanotic melanoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:15990972 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
Blue Rubber Bleb Nevus Syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glmn glomulin, FKBP associated protein ISO ClinVar Annotator: match by term: Blue rubber bleb nevus ClinVar NCBI chrNW_004936537:6,778,317...6,827,384 JBrowse link
CLOVES syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gna11 G protein subunit alpha 11 ISO ClinVar Annotator: match by term: CLOVE SYNDROME ClinVar PMID:25741868 PMID:27476652 NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO OMIM NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
Cutaneous Malignant Melanoma, Susceptibility To, 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO OMIM NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Pot1 protection of telomeres 1 ISO ClinVar Annotator: match by term: DYSPLASTIC NEVUS SYNDROME, HEREDITARY ClinVar PMID:24686846 PMID:28492532 NCBI chrNW_004936605:836,824...919,099 JBrowse link
G Stk11 serine/threonine kinase 11 ISO OMIM NCBI chrNW_004936588:579,816...601,033 JBrowse link
dysplastic nevus syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 ISO ClinVar Annotator: match by term: B-K MOLE SYNDROME ClinVar PMID:24686846 PMID:28492532 NCBI chrNW_004936605:836,824...919,099 JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: B-K MOLE SYNDROME ClinVar PMID:10201537 PMID:10208439 PMID:25157968 NCBI chrNW_004936588:579,816...601,033 JBrowse link
epidermal nevus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr3 fibroblast growth factor receptor 3 ISO OMIM NCBI chrNW_004936477:21,591,772...21,606,289 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Nevus sebaceous
ClinVar Annotator: match by term: NEVUS, KERATINOCYTIC, NONEPIDERMOLYTIC
ClinVar PMID:2278970 PMID:2547513 PMID:3122217 PMID:3627975 PMID:7773929 More... NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: NEVUS, KERATINOCYTIC, NONEPIDERMOLYTIC
ClinVar Annotator: match by term: Nevus sebaceous
ClinVar PMID:2105486 PMID:2999610 PMID:3537694 PMID:6092966 PMID:6330729 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936627:73,413...82,590 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO OMIM NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
Experimental Melanoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short chain family member 1 treatment ISO RGD PMID:27539851 RGD:13831304 NCBI chrNW_004936620:739,633...800,472 JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 treatment ISO RGD PMID:27539851 RGD:13831304 NCBI chrNW_004936561:5,794,685...5,842,619 JBrowse link
G Antxr1 ANTXR cell adhesion molecule 1 treatment ISO RGD PMID:19609240 PMID:19622764 RGD:9684925 RGD:9684939 NCBI chrNW_004936491:13,288,986...13,516,878 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29179997 PMID:29438700 NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Calr calreticulin ISO CTD Direct Evidence: therapeutic CTD PMID:16388313 NCBI chrNW_004936659:1,994,695...1,999,070 JBrowse link
G Ccl20 C-C motif chemokine ligand 20 treatment ISO RGD PMID:14500387 RGD:7483600 NCBI chrNW_004936525:8,238,128...8,240,974 JBrowse link
G Ctla4 cytotoxic T-lymphocyte associated protein 4 treatment ISO RGD PMID:24041689 RGD:7411680 NCBI chrNW_004936631:484,356...489,643 JBrowse link
G Egr1 early growth response 1 ISO mRNA, protein:increased expression:salivary gland (mouse) RGD PMID:19517020 RGD:5131885 NCBI chrNW_004936531:7,625,956...7,629,041 JBrowse link
G Esr2 estrogen receptor 2 severity ISO RGD PMID:20354658 RGD:8694122 NCBI chrNW_004936495:7,956,168...8,018,356 JBrowse link
G Hgf hepatocyte growth factor ISO RGD PMID:9823327 RGD:8548620 NCBI chrNW_004936734:354,798...428,356 JBrowse link
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:16417267 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO RGD PMID:19276165 RGD:7495758 NCBI chrNW_004936785:358,128...406,751 JBrowse link
G Il18 interleukin 18 treatment ISO RGD PMID:12230493 PMID:17411412 RGD:8655870 RGD:8655901 NCBI chrNW_004936612:2,306,963...2,325,086 JBrowse link
G Il1a interleukin 1 alpha treatment ISO RGD PMID:8061895 RGD:7794735 NCBI chrNW_004936783:1,210,715...1,218,315 JBrowse link
G Il1b interleukin 1 beta ISO RGD PMID:1966551 RGD:7401226 NCBI chrNW_004936783:1,251,678...1,256,807 JBrowse link
G Il2 interleukin 2 ISO RGD PMID:11884028 RGD:8662950 NCBI chrNW_004936662:1,594,953...1,599,625 JBrowse link
G Kdm1a lysine demethylase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29438700 NCBI chrNW_004936474:8,262,913...8,319,089 JBrowse link
G Kdm4c lysine demethylase 4C ISO CTD Direct Evidence: marker/mechanism CTD PMID:29438700 NCBI chrNW_004936539:1,198,105...1,580,078 JBrowse link
G Mc1r melanocortin 1 receptor ISO RGD PMID:20126537 RGD:5687319 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO RGD PMID:19208793 RGD:9589070 NCBI chrNW_004936745:152,571...163,712 JBrowse link
G Pten phosphatase and tensin homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:29179997 NCBI chrNW_004936735:1,252,414...1,338,318 JBrowse link
G Pxn paxillin ISO CTD Direct Evidence: marker/mechanism CTD PMID:18492274 NCBI chrNW_004936668:660,415...709,282 JBrowse link
G Tert telomerase reverse transcriptase treatment ISO RGD PMID:19903903 RGD:11038656 NCBI chrNW_004936815:468,987...492,666 JBrowse link
familial melanoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk4 cyclin dependent kinase 4 ISO OMIM NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Cdkn2b cyclin dependent kinase inhibitor 2B ISO ClinVar Annotator: match by term: Familial melanoma ClinVar PMID:9622062 PMID:15146471 PMID:16905682 PMID:28492532 NCBI chrNW_004936652:3,576,975...3,582,790 JBrowse link
G Fanca FA complementation group A ISO ClinVar Annotator: match by term: Cutaneous malignant melanoma 5 ClinVar PMID:28492532 NCBI chrNW_004936641:281,119...319,796 JBrowse link
G Klc1 kinesin light chain 1 ISO ClinVar Annotator: match by term: Cutaneous malignant melanoma 6 ClinVar PMID:11059748 NCBI chrNW_004936621:1,471,574...1,505,119 JBrowse link
G Mc1r melanocortin 1 receptor ISO OMIM NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Mitf melanocyte inducing transcription factor susceptibility ISO ClinVar Annotator: match by term: MELANOMA AND RENAL CELL CARCINOMA, SUSCEPTIBILITY TO
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:2440678 PMID:22012259 PMID:22080950 PMID:22158021 PMID:23167872 More... NCBI chrNW_004936603:1,682,411...1,858,295 JBrowse link
G Pot1 protection of telomeres 1 susceptibility ISO ClinVar Annotator: match by term: Melanoma, cutaneous malignant, susceptibility to, 10
ClinVar Annotator: match by term: Familial melanoma
ClinVar Annotator: match by term: Cutaneous malignant melanoma 5
ClinVar Annotator: match by term: MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 3
ClinVar Annotator: match by term: Hereditary cutaneous melanoma
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:9536098 PMID:16199547 PMID:17576681 PMID:23502782 PMID:24686846 More... NCBI chrNW_004936605:836,824...919,099 JBrowse link
G Spire2 spire type actin nucleation factor 2 ISO ClinVar Annotator: match by term: Cutaneous malignant melanoma 5 ClinVar PMID:28492532 NCBI chrNW_004936641:236,135...246,004 JBrowse link
G Tcf25 transcription factor 25 ISO ClinVar Annotator: match by term: Cutaneous malignant melanoma 5 ClinVar PMID:28492532 NCBI chrNW_004936641:202,522...232,962 JBrowse link
G Tert telomerase reverse transcriptase ISO OMIM NCBI chrNW_004936815:468,987...492,666 JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Familial melanoma ClinVar PMID:12826609 PMID:25741868 PMID:28492532 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tspan31 tetraspanin 31 ISO ClinVar Annotator: match by term: Hereditary cutaneous melanoma
ClinVar Annotator: match by term: Familial melanoma
ClinVar Annotator: match by term: MELANOMA, CUTANEOUS MALIGNANT, SUSCEPTIBILITY TO, 3
ClinVar Annotator: match by term: Cutaneous Malignant Melanoma, Dominant
ClinVar Annotator: match by term: Cutaneous malignant melanoma 5
ClinVar PMID:20668451 PMID:21520333 PMID:23718828 PMID:24728327 PMID:24755471 More... NCBI chrNW_004936646:1,883,272...1,886,287 JBrowse link
G Tyr tyrosinase ISO ClinVar Annotator: match by term: MELANOMA AND RENAL CELL CARCINOMA, SUSCEPTIBILITY TO ClinVar PMID:666627 PMID:1429711 PMID:1820207 PMID:7704033 PMID:9158138 More... NCBI chrNW_004936736:421,623...519,085 JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO OMIM NCBI chrNW_004936621:1,462,441...1,474,937 JBrowse link
large congenital melanocytic nevus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hras HRas proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: MELANOCYTIC NEVUS SYNDROME, CONGENITAL, SOMATIC
ClinVar Annotator: match by term: Congenital giant melanocytic nevus
ClinVar PMID:16170316 PMID:16329078 PMID:16372351 PMID:16443854 PMID:16835863 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936627:73,413...82,590 JBrowse link
linear nevus sebaceous syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hras HRas proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Nevus, Sebaceous of Jadassohn
ClinVar Annotator: match by term: Epidermal nevus syndrome
ClinVar Annotator: match by term: Linear nevus sebaceous
ClinVar Annotator: match by term: Organoid nevus phakomatosis
ClinVar PMID:12835555 PMID:16170316 PMID:16329078 PMID:16372351 PMID:16443854 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO OMIM NCBI chrNW_004936627:73,413...82,590 JBrowse link
melanoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15899824 NCBI chrNW_004936546:6,573,617...6,720,294 JBrowse link
G Acer3 alkaline ceramidase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:5,496,991...5,653,206 JBrowse link
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif 20 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21559390 NCBI chrNW_004936512:1,942,902...2,088,122 JBrowse link
G Ager advanced glycosylation end-product specific receptor treatment ISO RGD PMID:15009731 RGD:8695970 NCBI chrNW_004936727:1,418,342...1,422,005 JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Melanoma
ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31580832 NCBI chrNW_004936503:8,869,073...8,953,726 JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:31580832 NCBI chrNW_004936483:2,930,781...2,967,309 JBrowse link
G Amigo2 adhesion molecule with Ig like domain 2 treatment ISO RGD PMID:26553931 RGD:14392781 NCBI chrNW_004936512:5,157,076...5,160,251 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16373707 NCBI chrNW_004936877:666,545...669,351 JBrowse link
G Arl2 ADP ribosylation factor like GTPase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,336,190...4,343,007 JBrowse link
G Arl5b ADP ribosylation factor like GTPase 5B ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:8,877,277...8,903,772 JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator ISO CTD Direct Evidence: marker/mechanism CTD PMID:21983785 NCBI chrNW_004936580:1,038,420...1,093,319 JBrowse link
G Arpc2 actin related protein 2/3 complex subunit 2 ISO protein:increased expression:nevus (human) RGD PMID:19332774 RGD:11049176 NCBI chrNW_004936569:758,358...786,995 JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:12359751 RGD:4140479 NCBI chrNW_004936487:17,482,307...17,527,407 JBrowse link
G Atm ATM serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21983787 NCBI chrNW_004936551:359,134...534,672 JBrowse link
G Atrx ATRX chromatin remodeler disease_progression ISO protein:decreased expression:skin: RGD PMID:24468746 RGD:9586028 NCBI chrNW_004936683:2,496,307...2,718,539 JBrowse link
G Aurka aurora kinase A ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936875:295,238...310,457 JBrowse link
G B2m beta-2-microglobulin ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:26619011 NCBI chrNW_004936471:7,646,504...7,655,656 JBrowse link
G Batf2 basic leucine zipper ATF-like transcription factor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,352,270...4,358,658 JBrowse link
G Bcl2 BCL2 apoptosis regulator severity ISO protein:increased expression:lymph node (human) RGD PMID:8783649 RGD:11526106 NCBI chrNW_004936497:2,209,136...2,373,580 JBrowse link
G Bcl2l1 BCL2 like 1 disease_progression ISO protein:increased expression:skin, subcutaneous tissue (human) RGD PMID:17384650 RGD:11353861 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Bcl2l12 BCL2 like 12 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:26619011 NCBI chrNW_004936664:3,482,562...3,488,663 JBrowse link
G Bmp4 bone morphogenetic protein 4 susceptibility ISO DNA:SNP:cds:6007C>T (rs17563)(human) RGD PMID:19557432 RGD:9068447 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase treatment
onset
ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
DNA:mutations: :
CTD
ClinVar
RGD
PMID:2493360 PMID:2872605 PMID:8042262 PMID:12068308 PMID:12198537 More... RGD:11567259 RGD:11567267 RGD:1580103 NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Brca2 BRCA2 DNA repair associated susceptibility ISO DNA:polymorphism:cds:p.N991D(human)
ClinVar Annotator: match by term: Melanoma
RGD
ClinVar
PMID:18024013 PMID:25741868 PMID:28492532 RGD:9068469 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Brd2 bromodomain containing 2 ISO protein:mRNA:skin: RGD PMID:23950209 RGD:9586346 NCBI chrNW_004936476:25,807,179...25,818,914 JBrowse link
G Brd4 bromodomain containing 4 ISO protein:mRNA:skin: RGD PMID:23950209 RGD:9586346 NCBI chrNW_004936596:5,176,682...5,246,102 JBrowse link
G Bzw1 basic leucine zipper and W2 domains 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936726:149,391...166,075 JBrowse link
G C3 complement C3 treatment ISO RGD PMID:17146472 RGD:7401279 NCBI chrNW_004936588:3,985,732...4,023,221 JBrowse link
G Capn1 calpain 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,178,963...4,201,037 JBrowse link
G Casp10 caspase 10 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18563783 NCBI chrNW_004936726:460,556...489,550 JBrowse link
G Casp8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18563783 PMID:21983787 NCBI chrNW_004936726:554,627...596,334 JBrowse link
G Cat catalase ISO protein:increased activity:multiple:
protein:increased activity:melanocyte:
RGD PMID:9758419 PMID:15224238 RGD:9479151 RGD:9479742 NCBI chrNW_004936533:3,601,270...3,637,128 JBrowse link
G Cav1 caveolin 1 disease_progression ISO RGD PMID:22134245 RGD:8661767 NCBI chrNW_004936589:2,504,235...2,536,778 JBrowse link
G Cbs cystathionine beta-synthase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25205294 NCBI chrNW_004936500:976,043...1,003,559 JBrowse link
G Ccdc63 coiled-coil domain containing 63 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936558:3,716,920...3,744,633 JBrowse link
G Cd40 CD40 molecule treatment ISO RGD PMID:17327609 PMID:22421945 RGD:11522740 RGD:11522745 NCBI chrNW_004936514:6,936,915...6,947,246 JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21559390 NCBI chrNW_004936646:379,849...385,648 JBrowse link
G Cdk4 cyclin dependent kinase 4 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma
ClinVar PMID:5377176 PMID:7652577 PMID:8528263 PMID:8968104 PMID:9228064 More... NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO protein:increased expression:skin RGD PMID:9194578 PMID:22311377 RGD:8662421 RGD:8662817 NCBI chrNW_004936476:22,717,308...22,725,127 JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936794:1,023,891...1,025,470 JBrowse link
G Chi3l1 chitinase 3 like 1 severity ISO protein:increased secretion:serum (human) RGD PMID:16456816 RGD:4892643 NCBI chrNW_004936567:1,411,080...1,418,332 JBrowse link
G Clns1a chloride nucleotide-sensitive channel 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:6,239,866...6,265,743 JBrowse link
G Clu clusterin ISO CTD Direct Evidence: therapeutic CTD PMID:15955107 NCBI chrNW_004936675:499,745...513,515 JBrowse link
G Cnnm1 cyclin and CBS domain divalent metal cation transport mediator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936636:646,309...699,768 JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936512:5,861,933...5,894,898 JBrowse link
G Cpt1c carnitine palmitoyltransferase 1C ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936664:3,505,146...3,526,286 JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:26619011 NCBI chrNW_004936485:328,077...351,323 JBrowse link
G Crybg1 crystallin beta-gamma domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22402438 NCBI chrNW_004936564:3,050,639...3,101,041 JBrowse link
G Csf2 colony stimulating factor 2 ISO CTD Direct Evidence: therapeutic CTD PMID:11061616 NCBI chrNW_004936647:3,081,896...3,083,864 JBrowse link
G Csf3 colony stimulating factor 3 ISO CTD Direct Evidence: therapeutic CTD PMID:16120623 PMID:16260693 NCBI chrNW_004936490:15,142,526...15,146,375 JBrowse link
G Cst6 cystatin E/M ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:3,541,359...3,543,206 JBrowse link
G Cth cystathionine gamma-lyase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25205294 NCBI chrNW_004936591:1,619,446...1,643,667 JBrowse link
G Ctla4 cytotoxic T-lymphocyte associated protein 4 treatment ISO CTD Direct Evidence: therapeutic
DNA:SNPs: :-11577G>A,rs3087243(human)
CTD
RGD
PMID:21802280 PMID:23641913 RGD:7411681 NCBI chrNW_004936631:484,356...489,643 JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar PMID:9065402 PMID:9065403 PMID:9294210 PMID:9500465 PMID:9927029 More... NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Cubn cubilin ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:10,140,784...10,410,082 JBrowse link
G Cul3 cullin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936569:6,067,230...6,131,467 JBrowse link
G CUNH11orf68 chromosome unknown C11orf68 homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:3,624,401...3,626,237 JBrowse link
G Dcbld1 discoidin, CUB and LCCL domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:547,245...606,540 JBrowse link
G Dcc DCC netrin 1 receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:22842228 NCBI chrNW_004936497:10,122,078...11,169,900 JBrowse link
G Ddit4l DNA damage inducible transcript 4 like ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936520:2,823,896...2,828,687 JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ameliorates ISO DNA:deletion:exons: RGD PMID:24293323 RGD:150429711 NCBI chrNW_004936831:799,948...946,139 JBrowse link
G Dlg2 discs large MAGUK scaffold protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:11,549,526...13,519,638 JBrowse link
G Dnajc1 DnaJ heat shock protein family (Hsp40) member C1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:5,956,402...6,165,346 JBrowse link
G Dnajc15 DnaJ heat shock protein family (Hsp40) member C15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936747:800,070...864,299 JBrowse link
G Drap1 DR1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:3,621,549...3,622,824 JBrowse link
G Dsc1 desmocollin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22197931 NCBI chrNW_004936682:2,013,414...2,040,148 JBrowse link
G E2f1 E2F transcription factor 1 ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:15574415 PMID:16827129 NCBI chrNW_004936561:6,894,827...6,901,058 JBrowse link
G Echdc1 ethylmalonyl-CoA decarboxylase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936639:2,351,777...2,394,539 JBrowse link
G Eda ectodysplasin A ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936777:1,545,293...1,561,109 JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 disease_progression ISO RGD PMID:24658378 RGD:9590069 NCBI chrNW_004936727:1,648,451...1,663,294 JBrowse link
G Eif1ad eukaryotic translation initiation factor 1A domain containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:3,555,273...3,558,443 JBrowse link
G Eln elastin disease_progression ISO associated with Nevus, Pigmented; RGD PMID:11979070 PMID:19032378 RGD:9585752 RGD:9585768 NCBI chrNW_004936543:3,135,169...3,165,023 JBrowse link
G Eng endoglin treatment ISO RGD PMID:23076642 RGD:7248785 NCBI chrNW_004936487:15,467,165...15,499,180 JBrowse link
G Ep300 E1A binding protein p300 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23698071 NCBI chrNW_004936492:696,982...778,132 JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936474:12,917,009...13,090,640 JBrowse link
G Ephx3 epoxide hydrolase 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936596:5,247,529...5,252,740 JBrowse link
G Epo erythropoietin ISO CTD Direct Evidence: marker/mechanism CTD PMID:15743794 NCBI chrNW_004936543:742,722...745,332 JBrowse link
G Epor erythropoietin receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:21860424 NCBI chrNW_004936659:1,468,391...1,473,880 JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:18413839 PMID:22046346 PMID:23220880 PMID:25157968 PMID:26619011 NCBI chrNW_004936490:14,887,062...14,910,038 JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: Malignant melanoma, somatic
CTD
ClinVar
PMID:19718025 NCBI chrNW_004936586:4,065,767...5,100,690 JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:21722328 NCBI chrNW_004936706:1,854,938...1,867,521 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit disease_progression ISO DNA:polymorphism:exon:p.K751Q(human) RGD PMID:21390047 RGD:12880434 NCBI chrNW_004936706:1,816,561...1,829,638 JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease disease_progression ISO DNA:polymorphism:exon:p.D1104H(human) RGD PMID:21390047 RGD:12880434 NCBI chrNW_004936472:8,209,482...8,234,696 JBrowse link
G Esr1 estrogen receptor 1 severity ISO RGD PMID:19153340 RGD:8553064 NCBI chrNW_004936489:4,616,839...4,887,179 JBrowse link
G Esr2 estrogen receptor 2 severity ISO RGD PMID:19153340 RGD:8553064 NCBI chrNW_004936495:7,956,168...8,018,356 JBrowse link
G F2rl1 F2R like trypsin receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936549:142,281...153,575 JBrowse link
G Fas Fas cell surface death receptor susceptibility ISO DNA:polymorphisms:promoter:-1377A>G,-670A>G(human) RGD PMID:16538172 RGD:12903985 NCBI chrNW_004936735:209,369...234,582 JBrowse link
G Faslg Fas ligand susceptibility ISO DNA:polymorphisms,haplotype:promoter:-844C>T,IVS2nt-124A>G(human)
CTD Direct Evidence: therapeutic
RGD
CTD
PMID:16487513 PMID:16538172 RGD:12903985 NCBI chrNW_004936481:14,789,547...14,795,780 JBrowse link
G Fasn fatty acid synthase ISO CTD Direct Evidence: marker/mechanism CTD PMID:18770866 PMID:20805790 PMID:21213365 NCBI chrNW_004936594:5,591,785...5,609,886 JBrowse link
G Fat4 FAT atypical cadherin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22197931 NCBI chrNW_004936662:3,537,917...3,704,012 JBrowse link
G Fbn1 fibrillin 1 ISO ClinVar Annotator: match by term: Malignant melanoma ClinVar PMID:7611299 PMID:8894692 PMID:9401003 PMID:9536098 PMID:10533071 More... NCBI chrNW_004936471:10,747,030...10,969,223 JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:25741868 PMID:26619011 NCBI chrNW_004936689:2,261,163...2,449,951 JBrowse link
G Fhip2a FHF complex subunit HOOK interacting protein 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936486:5,041,106...5,075,507 JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:serum:
CTD
RGD
PMID:19718025 PMID:21730877 RGD:8552360 NCBI chrNW_004936472:23,442,946...23,617,523 JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:23455637 NCBI chrNW_004936475:6,321,725...6,689,410 JBrowse link
G Gab2 GRB2 associated binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:6,775,170...6,835,680 JBrowse link
G Gdf15 growth differentiation factor 15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936596:2,854,620...2,857,018 JBrowse link
G Ggt1 gamma-glutamyltransferase 1 disease_progression ISO RGD PMID:6120756 RGD:14747014 NCBI chrNW_004936619:762,278...791,610 JBrowse link
G Glo1 glyoxalase I ISO CTD Direct Evidence: marker/mechanism CTD PMID:20093988 NCBI chrNW_004936476:20,910,696...20,928,583 JBrowse link
G Gna11 G protein subunit alpha 11 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
CTD
ClinVar
PMID:1328859 PMID:2549426 PMID:21083380 PMID:21444680 PMID:22733540 More... NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:614,711...655,874 JBrowse link
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936486:2,754,753...2,823,600 JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 severity ISO protein:increased expression:skin (human) RGD PMID:28467693 RGD:39939016 NCBI chrNW_004936754:1,288,891...1,293,555 JBrowse link
G Gpha2 glycoprotein hormone subunit alpha 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,401,554...4,403,110 JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936530:8,286,101...8,612,183 JBrowse link
G Grm3 glutamate metabotropic receptor 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21946352 PMID:22842228 NCBI chrNW_004936653:345,770...553,460 JBrowse link
G Gstp1 glutathione S-transferase pi 1 ISO DNA:polymorphism:cds:p.I50V(human) RGD PMID:23568549 RGD:8547833 NCBI chrNW_004936599:2,197,681...2,200,642 JBrowse link
G Hdac2 histone deacetylase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936679:2,448,676...2,474,641 JBrowse link
G Hdac3 histone deacetylase 3 ISO associated with Anaphylaxis; RGD PMID:24619412 RGD:9590165 NCBI chrNW_004936504:12,530,546...12,546,556 JBrowse link
G Hdac6 histone deacetylase 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936721:757,500...778,416 JBrowse link
G Hikeshi heat shock protein nuclear import factor hikeshi ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:14,110,382...14,138,095 JBrowse link
G Hoxa9 homeobox A9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936478:3,789,961...3,793,116 JBrowse link
G Hoxb13 homeobox B13 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936490:12,688,572...12,690,908 JBrowse link
G Hoxd12 homeobox D12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936509:5,586,772...5,587,730 JBrowse link
G Hpse heparanase ISO CTD Direct Evidence: marker/mechanism CTD PMID:22240343 NCBI chrNW_004936738:1,308,350...1,341,421 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malignant melanoma
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
CTD
ClinVar
PMID:1904555 PMID:2999610 PMID:3510078 PMID:3537694 PMID:6092966 More... NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Hs3st5 heparan sulfate-glucosamine 3-sulfotransferase 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936679:2,540,894...2,737,462 JBrowse link
G Icam1 intercellular adhesion molecule 1 disease_progression ISO RGD PMID:8599446 RGD:8547584 NCBI chrNW_004936659:616,570...627,172 JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar PMID:18772396 PMID:19657110 PMID:19798509 PMID:19818334 PMID:20946881 More... NCBI chrNW_004936950:334,894...349,221 JBrowse link
G Ifnb1 interferon beta 1 ISO CTD Direct Evidence: therapeutic CTD PMID:16928243 PMID:21846298 NCBI chrNW_004936652:2,736,270...2,736,833 JBrowse link
G Ifng interferon gamma ISO CTD Direct Evidence: therapeutic CTD PMID:9794839 NCBI chrNW_004936545:6,139,130...6,144,543 JBrowse link
G Il17d interleukin 17D severity ISO RGD PMID:31244826 RGD:40903065 NCBI chrNW_004936720:1,005,111...1,029,613 JBrowse link
G Il1rapl1 interleukin 1 receptor accessory protein like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936553:5,063,042...5,824,427 JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO mouse model treated with human protein RGD PMID:8168095 RGD:6909140 NCBI chrNW_004936783:1,447,158...1,466,331 JBrowse link
G Il2 interleukin 2 ISO CTD Direct Evidence: therapeutic CTD PMID:12374674 PMID:12439608 PMID:15577323 PMID:15917704 PMID:16131448 More... NCBI chrNW_004936662:1,594,953...1,599,625 JBrowse link
G Il21 interleukin 21 treatment ISO RGD PMID:22477528 RGD:127285553 NCBI chrNW_004936662:1,689,879...1,696,883 JBrowse link
G Iqch IQ motif containing H ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936471:27,323,099...27,444,602 JBrowse link
G Jakmip2 janus kinase and microtubule interacting protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22842228 NCBI chrNW_004936504:7,019,273...7,177,502 JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30619488 NCBI chrNW_004936594:1,760,924...1,771,022 JBrowse link
G Kdm1a lysine demethylase 1A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29438700 NCBI chrNW_004936474:8,262,913...8,319,089 JBrowse link
G Kdm4a lysine demethylase 4A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29438700 NCBI chrNW_004936474:25,002,527...25,056,642 JBrowse link
G Kdm4b lysine demethylase 4B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29438700 NCBI chrNW_004936588:2,908,970...3,005,625 JBrowse link
G Kdm4c lysine demethylase 4C ISO CTD Direct Evidence: marker/mechanism CTD PMID:29438700 NCBI chrNW_004936539:1,198,105...1,580,078 JBrowse link
G Kdm7a lysine demethylase 7A ISO human gene in a mouse model RGD PMID:22143793 RGD:9587848 NCBI chrNW_004936592:4,250,658...4,305,838 JBrowse link
G Kdr kinase insert domain receptor treatment
disease_progression
ISO protein:increased expression:serum:
protein:increased expression, altered expression:skin:
RGD PMID:12415261 PMID:15714119 PMID:21730877 RGD:126925192 RGD:8551851 RGD:8552360 NCBI chrNW_004936482:17,537,697...17,581,320 JBrowse link
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936476:2,469,396...3,001,997 JBrowse link
G Kif18b kinesin family member 18B ISO CTD Direct Evidence: marker/mechanism CTD PMID:31617652 NCBI chrNW_004936541:1,285,137...1,304,179 JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase disease_progression ISO ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: Malignant melanoma, somatic
RGD
ClinVar
PMID:7513208 PMID:7530509 PMID:8589724 PMID:9310959 PMID:9438854 More... RGD:12910725 NCBI chrNW_004936482:17,162,854...17,238,319 JBrowse link
G Klrb1 killer cell lectin like receptor B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17295095 NCBI chrNW_004937004:204,731...215,891 JBrowse link
G Knstrn kinetochore localized astrin (SPAG5) binding protein ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:26619011 NCBI chrNW_004936471:3,838,507...3,849,521 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:2278970 PMID:3122217 PMID:12460918 PMID:15696205 PMID:16361624 More... NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G Lgals3 galectin 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23994248 NCBI chrNW_004936697:20,861...38,568 JBrowse link
G LOC101956126 heat shock 70 kDa protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26984758 NCBI chrNW_004936727:1,732,323...1,735,128 JBrowse link
G LOC101957171 mitochondrial poly(A) polymerase ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936613:3,836,461...3,865,240 JBrowse link
G LOC101957478 RAP1 GTPase activating protein ISO protein:decreased expression:epidermal melanocyte (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:19147557 PMID:22614916 RGD:9835344 NCBI chrNW_004936474:7,242,528...7,284,342 JBrowse link
G LOC101957492 transformation/transcription domain associated protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936750:1,245,926...1,360,226 JBrowse link
G LOC101957668 CREB binding protein ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar PMID:21390126 PMID:21680795 PMID:21796119 PMID:22832583 PMID:23334668 More... NCBI chrNW_004936694:552,447...663,237 JBrowse link
G LOC101958307 inner centromere protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936581:999,148...1,028,157 JBrowse link
G LOC101962856 ceruloplasmin ISO CTD Direct Evidence: marker/mechanism CTD PMID:23792645 NCBI chrNW_004936519:6,431,156...6,473,183 JBrowse link
G LOC101970101 cytochrome P450 1B1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936663:345,021...355,188 JBrowse link
G LOC101970611 5'-nucleotidase domain-containing protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936824:805,647...841,113 JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:1594625 PMID:1944469 PMID:2549426 PMID:3720010 PMID:7739708 More... NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G LOC101971998 guanine nucleotide-binding protein G(q) subunit alpha ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: Malignant melanoma, somatic
CTD
ClinVar
PMID:1328859 PMID:2549426 PMID:18719078 PMID:19078957 PMID:21083380 More... NCBI chrNW_004936503:13,098,517...13,276,106 JBrowse link
G LOC101972115 transmembrane protein 132B ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936558:23,008...194,479 JBrowse link
G LOC101972142 methylthioadenosine phosphorylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19578364 NCBI chrNW_004936652:3,431,588...3,468,770 JBrowse link
G LOC101977071 sialin ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936859:668,900...684,207 JBrowse link
G LOC101978402 agouti signaling protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:18488027 PMID:18641652 PMID:21983785 NCBI chrNW_004936561:6,341,667...6,346,440 JBrowse link
G Lrp1b LDL receptor related protein 1B ameliorates ISO CTD Direct Evidence: marker/mechanism
DNA:mutations:multiple: (human)
CTD
RGD
PMID:22197931 PMID:31164891 RGD:150429775 NCBI chrNW_004936469:35,000,773...36,160,216 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar PMID:1904555 PMID:2999610 PMID:3510078 PMID:3537694 PMID:6092966 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Lta lymphotoxin alpha disease_progression ISO RGD PMID:9182821 RGD:8548801 NCBI chrNW_004936727:1,940,081...1,941,022 JBrowse link
G Lxn latexin ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936519:5,266,988...5,273,227 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
CTD
ClinVar
PMID:7651428 PMID:17366577 PMID:17551924 PMID:17704260 PMID:18060073 More... NCBI chrNW_004936471:26,589,251...26,628,302 JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
CTD
ClinVar
PMID:22197931 PMID:24265153 PMID:24265154 NCBI chrNW_004936588:2,338,127...2,377,090 JBrowse link
G Map3k5 mitogen-activated protein kinase kinase kinase 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22197930 NCBI chrNW_004936560:3,988,696...4,197,953 JBrowse link
G Map3k9 mitogen-activated protein kinase kinase kinase 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22197930 NCBI chrNW_004936488:355,906...386,829 JBrowse link
G Mc1r melanocortin 1 receptor ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malignant melanoma
ClinVar Annotator: match by term: Malignant Melanoma Susceptibility
DNA:missense mutations:cds:multiple (human)
CTD
ClinVar
RGD
PMID:7581459 PMID:8894704 PMID:16809487 PMID:16982779 PMID:17434924 More... RGD:1600619 RGD:6484659 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Mdm2 MDM2 proto-oncogene ISO CTD Direct Evidence: marker/mechanism CTD PMID:17210701 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Meltf melanotransferrin ISO CTD Direct Evidence: marker/mechanism CTD PMID:16704991 NCBI chrNW_004936833:853,925...875,069 JBrowse link
G Met MET proto-oncogene, receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29426936 NCBI chrNW_004936589:2,280,803...2,390,179 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO protein:increased activity:skin tumor (rat) RGD PMID:20182810 RGD:2316960 NCBI chrNW_004936486:16,744,607...16,923,209 JBrowse link
G Mitf melanocyte inducing transcription factor ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
mRNA:increased expression:blood
CTD
ClinVar
RGD
PMID:2440678 PMID:15103749 PMID:22012259 PMID:22080950 PMID:22158021 More... RGD:13204752 NCBI chrNW_004936603:1,682,411...1,858,295 JBrowse link
G Mlana melan-A ISO CTD Direct Evidence: marker/mechanism CTD PMID:26640592 NCBI chrNW_004936539:504,445...518,702 JBrowse link
G Mllt10 MLLT10 histone lysine methyltransferase DOT1L cofactor ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:6,176,784...6,366,436 JBrowse link
G Mmp8 matrix metallopeptidase 8 ISO CTD Direct Evidence: therapeutic CTD PMID:19330028 NCBI chrNW_004936551:5,228,950...5,238,948 JBrowse link
G Mpst mercaptopyruvate sulfurtransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:25205294 NCBI chrNW_004936492:3,873,295...3,876,895 JBrowse link
G Mrpl49 mitochondrial ribosomal protein L49 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,243,310...4,246,546 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar PMID:20190810 PMID:24631838 PMID:26018084 PMID:26619011 PMID:27159400 More... NCBI chrNW_004936474:158,376...282,310 JBrowse link
G Myo7a myosin VIIA ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:5,758,572...5,824,526 JBrowse link
G Ndrg1 N-myc downstream regulated 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:15341671 NCBI chrNW_004936470:16,051,291...16,102,563 JBrowse link
G Nf1 neurofibromin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25119042 PMID:26214590 NCBI chrNW_004936538:3,394,623...3,596,025 JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 ISO DNA:insertion(s) RGD PMID:17492467 RGD:2298900 NCBI chrNW_004936520:733,760...850,563 JBrowse link
G Nfkbia NFKB inhibitor alpha ISO DNA:insertion(s) RGD PMID:17492467 RGD:2298900 NCBI chrNW_004936494:9,537,793...9,541,187 JBrowse link
G Nfkbie NFKB inhibitor epsilon ISO CTD Direct Evidence: marker/mechanism CTD PMID:26343386 NCBI chrNW_004936476:15,818,605...15,825,558 JBrowse link
G Ngfr nerve growth factor receptor ISO CTD Direct Evidence: marker/mechanism CTD PMID:30339727 NCBI chrNW_004936490:12,038,500...12,057,257 JBrowse link
G Nppa natriuretic peptide A ISO CTD Direct Evidence: therapeutic CTD PMID:18004088 NCBI chrNW_004936474:671,362...673,610 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
CTD
ClinVar
PMID:1654209 PMID:2278970 PMID:2407301 PMID:2674680 PMID:2989702 More... NCBI chrNW_004936627:73,413...82,590 JBrowse link
G Nuf2 NUF2 component of NDC80 kinetochore complex disease_progression ISO RGD PMID:27237743 RGD:28867234 NCBI chrNW_004936481:21,342,667...21,371,311 JBrowse link
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:695,431...718,891 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28759004 NCBI chrNW_004936526:3,102,468...3,147,601 JBrowse link
G Pax4 paired box 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18949370 NCBI chrNW_004936479:14,807,503...14,812,575 JBrowse link
G Pax6 paired box 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936533:5,952,529...5,980,889 JBrowse link
G Pdcd1 programmed cell death 1 treatment ISO CTD Direct Evidence: therapeutic
associated with influenza
CTD
RGD
PMID:21802280 PMID:27760326 RGD:40818261 NCBI chrNW_004936745:152,571...163,712 JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISO ClinVar Annotator: match by term: Melanoma ClinVar PMID:24132921 NCBI chrNW_004936482:16,804,129...16,853,539 JBrowse link
G Phgdh phosphoglycerate dehydrogenase ISO CTD Direct Evidence: marker/mechanism CTD PMID:21804546 NCBI chrNW_004936627:4,414,122...4,448,347 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:25157968 PMID:26619011 NCBI chrNW_004936480:1,188,408...1,273,210 JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:5,383,737...5,540,176 JBrowse link
G Pkmyt1 protein kinase, membrane associated tyrosine/threonine 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936694:1,191,534...1,196,532 JBrowse link
G Plcb4 phospholipase C beta 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936485:9,991,731...10,353,231 JBrowse link
G Pmel premelanosome protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:26640592 NCBI chrNW_004936646:368,064...379,085 JBrowse link
G Pomc proopiomelanocortin ISO CTD Direct Evidence: therapeutic CTD PMID:24412703 NCBI chrNW_004936493:7,060,747...7,065,276 JBrowse link
G Pot1 protection of telomeres 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: MELANOMA, MALIGNANT
CTD
ClinVar
PMID:24686846 PMID:24686849 PMID:28492532 NCBI chrNW_004936605:836,824...919,099 JBrowse link
G Ppard peroxisome proliferator activated receptor delta ISO CTD Direct Evidence: therapeutic CTD PMID:28962521 NCBI chrNW_004936476:23,799,285...23,886,606 JBrowse link
G Pparg peroxisome proliferator activated receptor gamma ISO CTD Direct Evidence: marker/mechanism|therapeutic CTD PMID:14512786 PMID:28962521 NCBI chrNW_004936602:1,230,907...1,368,588 JBrowse link
G Ppargc1a PPARG coactivator 1 alpha severity ISO mRNA:increased expression:tumor (human) RGD PMID:23416000 RGD:7241823 NCBI chrNW_004936477:4,881,230...5,488,208 JBrowse link
G Ppp1r14b protein phosphatase 1 regulatory inhibitor subunit 14B ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,955,839...4,957,908 JBrowse link
G Ppp6c protein phosphatase 6 catalytic subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:22842228 NCBI chrNW_004936487:13,284,652...13,320,936 JBrowse link
G Prame PRAME nuclear receptor transcriptional regulator ISO mRNA:increased expression:skin of body (human)
CTD Direct Evidence: marker/mechanism
RGD
CTD
PMID:9047241 PMID:16179254 PMID:27505074 RGD:11535038 RGD:11535062 NCBI chrNW_004936619:1,748,337...1,751,748 JBrowse link
G Prdx2 peroxiredoxin 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936659:1,894,423...1,897,690 JBrowse link
G Prss23 serine protease 23 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:14,560,730...14,563,195 JBrowse link
G Pten phosphatase and tensin homolog ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
CTD
ClinVar
PMID:1097835 PMID:9467011 PMID:9915974 PMID:10866302 PMID:10978354 More... NCBI chrNW_004936735:1,252,414...1,338,318 JBrowse link
G Pter phosphotriesterase related ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:10,666,443...10,727,562 JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 PMID:17499752 PMID:18454317 NCBI chrNW_004936481:3,821,564...3,828,086 JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:19718025 NCBI chrNW_004936675:216,970...325,670 JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 PMID:22842228 NCBI chrNW_004936639:1,279,795...1,683,944 JBrowse link
G Ptpro protein tyrosine phosphatase receptor type O ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936587:1,967,079...2,188,651 JBrowse link
G Qpct glutaminyl-peptide cyclotransferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936663:929,737...959,458 JBrowse link
G Rac1 Rac family small GTPase 1 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
CTD
ClinVar
PMID:22842228 PMID:25056119 PMID:26619011 NCBI chrNW_004936750:107,689...122,679 JBrowse link
G Rac2 Rac family small GTPase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936492:3,726,375...3,737,961 JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar PMID:1760348 PMID:8601312 PMID:10064593 PMID:12077328 PMID:17603482 More... NCBI chrNW_004936602:1,089,979...1,114,376 JBrowse link
G Rai1 retinoic acid induced 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936741:1,332,353...1,408,116 JBrowse link
G Rasa2 RAS p21 protein activator 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26214590 PMID:26502337 NCBI chrNW_004936540:3,321,458...3,410,715 JBrowse link
G Rax retina and anterior neural fold homeobox ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936497:5,451,055...5,457,334 JBrowse link
G Rec8 REC8 meiotic recombination protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936722:369,366...375,243 JBrowse link
G Rfx6 regulatory factor X6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:94,589...145,135 JBrowse link
G Rhob ras homolog family member B ISO RGD PMID:12606940 RGD:704376 NCBI chrNW_004936493:10,987,801...10,990,207 JBrowse link
G Rin1 Ras and Rab interactor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:3,267,223...3,274,359 JBrowse link
G Ros1 ROS proto-oncogene 1, receptor tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:382,025...506,818 JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936574:5,648,696...5,653,030 JBrowse link
G Rps3 ribosomal protein S3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936498:4,198,189...4,204,531 JBrowse link
G S100a4 S100 calcium binding protein A4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29179997 NCBI chrNW_004936580:3,355,751...3,358,030 JBrowse link
G Sac3d1 SAC3 domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,316,488...4,319,700 JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO CTD Direct Evidence: marker/mechanism CTD PMID:25261935 NCBI chrNW_004936612:2,357,336...2,369,204 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 severity ISO CTD Direct Evidence: marker/mechanism
protein:increased expression:dermis, subcutis, nucleus (human)
CTD
RGD
PMID:21983785 PMID:24673285 RGD:9590162 NCBI chrNW_004936580:1,146,286...1,192,842 JBrowse link
G Sf1 splicing factor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,533,664...4,546,857 JBrowse link
G Sipa1 signal-induced proliferation-associated 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:3,813,350...3,825,319 JBrowse link
G Slc15a2 solute carrier family 15 member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22842228 NCBI chrNW_004936536:8,280,537...8,316,011 JBrowse link
G Slc25a45 solute carrier family 25 member 45 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,038,080...4,043,268 JBrowse link
G Slc39a12 solute carrier family 39 member 12 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936520:9,380,723...9,444,146 JBrowse link
G Slc45a2 solute carrier family 45 member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18563784 PMID:21559390 NCBI chrNW_004936518:7,094,949...7,139,961 JBrowse link
G Slc5a5 solute carrier family 5 member 5 ISO CTD Direct Evidence: therapeutic CTD PMID:12489024 NCBI chrNW_004936596:3,176,009...3,188,637 JBrowse link
G Slc6a11 solute carrier family 6 member 11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936602:2,437,653...2,564,309 JBrowse link
G Snapc5 small nuclear RNA activating complex polypeptide 5 ISO ClinVar Annotator: match by term: Melanoma ClinVar PMID:22197931 NCBI chrNW_004936471:26,629,765...26,634,640 JBrowse link
G Sod2 superoxide dismutase 2 ISO protein:increased expression:serum: RGD PMID:8541726 RGD:8547533 NCBI chrNW_004936489:11,178,338...11,191,601 JBrowse link
G Sox2 SRY-box transcription factor 2 disease_progression ISO RGD PMID:21410764 RGD:8661664 NCBI chrNW_004936566:1,630,698...1,632,607 JBrowse link
G Spp1 secreted phosphoprotein 1 ISO RGD PMID:15757900 RGD:1581337 NCBI chrNW_004936905:148,956...156,023 JBrowse link
G Stip1 stress induced phosphoprotein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936599:4,990,867...5,005,577 JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: Malignant melanoma
ClinVar Annotator: match by term: MELANOMA, MALIGNANT
ClinVar PMID:10201537 PMID:10208439 PMID:25157968 NCBI chrNW_004936588:579,816...601,033 JBrowse link
G Stk19 serine/threonine kinase 19 ISO ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC ClinVar PMID:26619011 NCBI chrNW_004936727:1,570,650...1,576,796 JBrowse link
G Stx17 syntaxin 17 ISO CTD Direct Evidence: marker/mechanism CTD PMID:18641652 NCBI chrNW_004936524:8,324,562...8,381,244 JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:25119042 NCBI chrNW_004936538:2,921,987...2,971,521 JBrowse link
G Syk spleen associated tyrosine kinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:17145863 NCBI chrNW_004936780:1,553,605...1,601,036 JBrowse link
G Syt4 synaptotagmin 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936517:3,035,840...3,044,065 JBrowse link
G Tert telomerase reverse transcriptase ISO mRNA:increased expression:plasma
CTD Direct Evidence: therapeutic
RGD
CTD
PMID:14654933 PMID:20856939 RGD:2291969 NCBI chrNW_004936815:468,987...492,666 JBrowse link
G Tfpi2 tissue factor pathway inhibitor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17372906 NCBI chrNW_004936803:69,296...90,270 JBrowse link
G Tlr4 toll like receptor 4 ISO CTD Direct Evidence: marker/mechanism
DNA:polymorphisms:exons:p.D299G (896A>G)(human;)
CTD
RGD
PMID:22552381 PMID:22842228 RGD:7777154 NCBI chrNW_004936487:6,519,140...6,532,018 JBrowse link
G Tmem30b transmembrane protein 30B ISO CTD Direct Evidence: marker/mechanism CTD PMID:16778180 NCBI chrNW_004936495:5,390,078...5,392,726 JBrowse link
G Tnc tenascin C ISO CTD Direct Evidence: marker/mechanism CTD PMID:22842228 NCBI chrNW_004936487:4,172,263...4,256,780 JBrowse link
G Tnf tumor necrosis factor ISO CTD Direct Evidence: therapeutic CTD PMID:9794839 PMID:9843018 PMID:10379864 PMID:18388930 NCBI chrNW_004936727:1,936,066...1,937,766 JBrowse link
G Tnfrsf19 TNF receptor superfamily member 19 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17187358 NCBI chrNW_004936688:1,791,350...1,883,351 JBrowse link
G Tp53 tumor protein p53 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Malignant melanoma, somatic
ClinVar Annotator: match by term: Melanoma
ClinVar Annotator: match by term: MELANOMA, MALIGNANT, SOMATIC
DNA:polymorphism:cds:p.R72P(human)
CTD
ClinVar
RGD
PMID:1349175 PMID:1359493 PMID:1565143 PMID:1565144 PMID:1569604 More... RGD:8547796 RGD:8547833 NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tspyl4 TSPY like 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936824:842,698...846,653 JBrowse link
G Tyr tyrosinase disease_progression ISO CTD Direct Evidence: marker/mechanism RGD
CTD
PMID:8609659 PMID:18488027 PMID:19578364 PMID:21559390 PMID:22834951 More... RGD:8694384 RGD:8694387 NCBI chrNW_004936736:421,623...519,085 JBrowse link
G Tyrp1 tyrosinase related protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:26640592 NCBI chrNW_004936539:6,537,448...6,555,440 JBrowse link
G Usp6nl USP6 N-terminal like ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936484:3,635,966...3,802,906 JBrowse link
G Vdr vitamin D receptor disease_progression
severity
ISO DNA:SNPs:exons: (rs731236, rs2228570) (human)
DNA:SNP:promoter:rs4516035 (human)
RGD PMID:10690530 PMID:19105801 RGD:8158067 RGD:8158068 NCBI chrNW_004936512:5,741,836...5,800,999 JBrowse link
G Vegfa vascular endothelial growth factor A disease_progression ISO RGD PMID:12946796 RGD:7421569 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link
G Vegfc vascular endothelial growth factor C ISO CTD Direct Evidence: marker/mechanism CTD PMID:17562445 NCBI chrNW_004936516:7,217,543...7,332,531 JBrowse link
G Vgll2 vestigial like family member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936658:362,377...370,298 JBrowse link
G Wdr74 WD repeat domain 74 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936581:456,354...461,610 JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:11059748 NCBI chrNW_004936621:1,462,441...1,474,937 JBrowse link
G Znf438 zinc finger protein 438 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22535842 NCBI chrNW_004936613:4,648,059...4,816,415 JBrowse link
G Znf831 zinc finger protein 831 ISO CTD Direct Evidence: marker/mechanism CTD PMID:21499247 NCBI chrNW_004936530:1,642,670...1,646,785 JBrowse link
Nevus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase no_association ISO DNA:mutation:cds:p.V600E(human)
DNA:mutation: :T1796A(human)
RGD PMID:14984580 PMID:25490715 RGD:11567234 RGD:11567261 NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G LOC101972142 methylthioadenosine phosphorylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:19578365 NCBI chrNW_004936652:3,431,588...3,468,770 JBrowse link
G Pla2g6 phospholipase A2 group VI ISO CTD Direct Evidence: marker/mechanism CTD PMID:19578365 NCBI chrNW_004936492:3,011,752...3,060,962 JBrowse link
Nevus Comedonicus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nek9 NIMA related kinase 9 ISO OMIM NCBI chrNW_004936488:4,221,099...4,261,401 JBrowse link
Nevus, Epithelioid and Spindle Cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bap1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 NCBI chrNW_004936473:3,239,009...3,247,806 JBrowse link
Pigmented Nevus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: PIGMENTED MOLES ClinVar PMID:16170316 PMID:16329078 PMID:16372351 PMID:16443854 PMID:16835863 More... NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: PIGMENTED MOLES ClinVar PMID:16170316 PMID:16329078 PMID:16372351 PMID:16443854 PMID:16835863 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Nf1 neurofibromin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25119042 NCBI chrNW_004936538:3,394,623...3,596,025 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: PIGMENTED MOLES ClinVar PMID:1654209 PMID:2278970 PMID:2674680 PMID:3102434 PMID:3122217 More... NCBI chrNW_004936627:73,413...82,590 JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:25119042 NCBI chrNW_004936538:2,921,987...2,971,521 JBrowse link
Sebaceous Nevus Syndrome and Hemimegalencephaly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Sebaceous nevus syndrome and hemimegalencephaly ClinVar PMID:12835555 PMID:16170316 PMID:16329078 PMID:16372351 PMID:16443854 More... NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Sebaceous nevus syndrome and hemimegalencephaly ClinVar PMID:2278970 PMID:3122217 PMID:7773929 PMID:8439212 PMID:12460918 More... NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Sebaceous nevus syndrome and hemimegalencephaly ClinVar PMID:12835555 PMID:16170316 PMID:16329078 PMID:16372351 PMID:16443854 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Sebaceous nevus syndrome and hemimegalencephaly ClinVar PMID:1654209 PMID:2278970 PMID:2674680 PMID:3122217 PMID:6587382 More... NCBI chrNW_004936627:73,413...82,590 JBrowse link
skin melanoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO protein:increased expression:serum RGD PMID:19394758 RGD:8548874 NCBI chrNW_004936484:19,713,299...19,721,144 JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:17611497 PMID:18256540 PMID:18392055 PMID:18504432 PMID:18611285 More... NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Araf A-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:24569458 PMID:26619011 NCBI chrNW_004936502:13,323,365...13,335,003 JBrowse link
G B2m beta-2-microglobulin ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936471:7,646,504...7,655,656 JBrowse link
G Bap1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25231345 PMID:26719535 NCBI chrNW_004936473:3,239,009...3,247,806 JBrowse link
G Bcl2l12 BCL2 like 12 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936664:3,482,562...3,488,663 JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar PMID:2493360 PMID:12068308 PMID:12198537 PMID:12438234 PMID:12447372 More... NCBI chrNW_004936592:4,728,371...4,833,830 JBrowse link
G Brca2 BRCA2 DNA repair associated disease_progression ISO DNA:SNP: :rs206118, rs3752447, rs10492396 (human) RGD PMID:25243787 RGD:11344896 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Cd40 CD40 molecule disease_progression ISO RGD PMID:8952530 RGD:8547772 NCBI chrNW_004936514:6,936,915...6,947,246 JBrowse link
G Cdk4 cyclin dependent kinase 4 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:5377176 PMID:7652577 PMID:8528263 PMID:8968104 PMID:9228064 More... NCBI chrNW_004936646:1,886,262...1,889,260 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B severity ISO protein:increased expression:skin: RGD PMID:20178651 RGD:9587476 NCBI chrNW_004936500:6,262,207...6,288,833 JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936569:1,023,057...1,048,968 JBrowse link
G Cnr1 cannabinoid receptor 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28131817 NCBI chrNW_004936510:3,779,930...3,806,615 JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29179997 NCBI chrNW_004936631:3,721,307...3,785,346 JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936485:328,077...351,323 JBrowse link
G Ctnnb1 catenin beta 1 ISO ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar PMID:9065402 PMID:9065403 PMID:9294210 PMID:9500465 PMID:9927029 More... NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta disease_progression ISO RGD PMID:21081840 RGD:9589074 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:18413839 PMID:22046346 PMID:23220880 PMID:25157968 PMID:26619011 NCBI chrNW_004936490:14,887,062...14,910,038 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:23023262 PMID:24563539 PMID:26619011 NCBI chrNW_004936527:5,024,077...5,069,152 JBrowse link
G Fanca FA complementation group A disease_progression ISO DNA:SNP: :rs62068372 (human) RGD PMID:25243787 RGD:11344896 NCBI chrNW_004936641:281,119...319,796 JBrowse link
G Fancd2 FA complementation group D2 ISO mRNA,protein:increased expression:skin,nucleus: RGD PMID:21697891 RGD:11046262 NCBI chrNW_004936602:3,162,177...3,220,468 JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:25741868 PMID:26619011 NCBI chrNW_004936689:2,261,163...2,449,951 JBrowse link
G Gna11 G protein subunit alpha 11 ISO ClinVar Annotator: match by term: Cutaneous melanoma ClinVar PMID:1328859 PMID:2549426 PMID:21083380 PMID:21444680 PMID:22733540 More... NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO protein:increased expression:epidermis (human) RGD PMID:19558170 RGD:8695922 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:1904555 PMID:3510078 PMID:11150980 PMID:12835555 PMID:16155195 More... NCBI chrNW_004936888:375,372...378,125 JBrowse link
G Icam1 intercellular adhesion molecule 1 disease_progression ISO DNA:missense mutation:exon:p.R241G (human) RGD PMID:16313300 RGD:8547698 NCBI chrNW_004936659:616,570...627,172 JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:18772396 PMID:19657110 PMID:19798509 PMID:19818334 PMID:20946881 More... NCBI chrNW_004936950:334,894...349,221 JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30619488 NCBI chrNW_004936594:1,760,924...1,771,022 JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase ISO ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar PMID:7513208 PMID:7530509 PMID:8589724 PMID:9438854 PMID:9657776 More... NCBI chrNW_004936482:17,162,854...17,238,319 JBrowse link
G Knstrn kinetochore localized astrin (SPAG5) binding protein ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936471:3,838,507...3,849,521 JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:2278970 PMID:3122217 PMID:12460918 PMID:15696205 PMID:16361624 More... NCBI chrNW_004936548:2,078,568...2,113,877 JBrowse link
G LOC101957668 CREB binding protein ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:21390126 PMID:21680795 PMID:21796119 PMID:22832583 PMID:23334668 More... NCBI chrNW_004936694:552,447...663,237 JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:1594625 PMID:1944469 PMID:2549426 PMID:3720010 PMID:7739708 More... NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:1904555 PMID:3510078 PMID:11150980 PMID:12835555 PMID:16155195 More... NCBI chrNW_004936888:379,622...397,647 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar PMID:7651428 PMID:17366577 PMID:17551924 PMID:18632602 PMID:19915144 More... NCBI chrNW_004936471:26,589,251...26,628,302 JBrowse link
G Map2k2 mitogen-activated protein kinase kinase 2 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:18042262 PMID:26619011 NCBI chrNW_004936588:2,338,127...2,377,090 JBrowse link
G Mitf melanocyte inducing transcription factor ISO CTD Direct Evidence: marker/mechanism CTD PMID:22080950 NCBI chrNW_004936603:1,682,411...1,858,295 JBrowse link
G Mmp1 matrix metallopeptidase 1 disease_progression ISO DNA:SNPs, haplotype:promoter:multiple
DNA:polymorphisms, haplotypes:promoter:multiple
RGD PMID:20655738 PMID:22198560 RGD:8549726 RGD:8549727 NCBI chrNW_004936551:5,167,909...5,175,149 JBrowse link
G Mmp2 matrix metallopeptidase 2 severity ISO mRNA:increased expression:skin RGD PMID:12404291 PMID:18251742 PMID:20966734 RGD:13204786 RGD:8657055 RGD:8657075 NCBI chrNW_004936475:7,801,356...7,825,831 JBrowse link
G Mmp9 matrix metallopeptidase 9 disease progression ISO DNA:SNP, missense mutations:promoter, cds:-1562C>T,p.R279Q, p.P574R (human) RGD PMID:12404291 PMID:17346338 RGD:13204786 RGD:8547886 NCBI chrNW_004936514:7,038,240...7,045,873 JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar PMID:20190810 PMID:24631838 PMID:26018084 PMID:26619011 PMID:27159400 More... NCBI chrNW_004936474:158,376...282,310 JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:25157968 PMID:26619011 NCBI chrNW_004936470:20,480,844...20,485,955 JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar PMID:1654209 PMID:2278970 PMID:2407301 PMID:2674680 PMID:2989702 More... NCBI chrNW_004936627:73,413...82,590 JBrowse link
G Oca2 OCA2 melanosomal transmembrane protein susceptibility ISO DNA:snps:exon, intron:multiple (human)
DNA:snp:cds:p.R419Q (rs1800407) (human)
DNA:missense mutation:cds:p.H615R (rs1800414) (human)
RGD PMID:15889046 PMID:19710684 PMID:24617981 RGD:9491818 RGD:9491829 RGD:9491831 NCBI chrNW_004936471:38,612,450...38,952,150 JBrowse link
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ISO ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar PMID:15016963 PMID:15254419 PMID:15520168 PMID:15608678 PMID:15647370 More... NCBI chrNW_004936566:3,924,013...3,951,052 JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:19962457 PMID:25157968 PMID:26619011 NCBI chrNW_004936480:1,188,408...1,273,210 JBrowse link
G Pot1 protection of telomeres 1 ISO ClinVar Annotator: match by term: DYSPLASTIC NEVUS SYNDROME, HEREDITARY ClinVar PMID:24686846 PMID:28492532 NCBI chrNW_004936605:836,824...919,099 JBrowse link
G Ppp6c protein phosphatase 6 catalytic subunit ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936487:13,284,652...13,320,936 JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:9467011 PMID:9915974 PMID:10866302 PMID:11504908 PMID:11875759 More... NCBI chrNW_004936735:1,252,414...1,338,318 JBrowse link
G Rac1 Rac family small GTPase 1 ISO ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar PMID:25056119 PMID:26619011 NCBI chrNW_004936750:107,689...122,679 JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:1760348 PMID:8601312 PMID:10064593 PMID:12077328 PMID:17603482 More... NCBI chrNW_004936602:1,089,979...1,114,376 JBrowse link
G Sf3b1 splicing factor 3b subunit 1 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:23634996 PMID:26619011 NCBI chrNW_004936506:1,749,591...1,790,860 JBrowse link
G Sf3b2 splicing factor 3b subunit 2 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936599:3,477,882...3,494,366 JBrowse link
G Slc45a2 solute carrier family 45 member 2 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:15714523 PMID:17044855 PMID:17999355 PMID:18563784 PMID:18683857 More... NCBI chrNW_004936518:7,094,949...7,139,961 JBrowse link
G Stat3 signal transducer and activator of transcription 3 disease_progression ISO RGD PMID:21876460 RGD:8694297 NCBI chrNW_004936490:17,119,189...17,178,402 JBrowse link
G Stk11 serine/threonine kinase 11 ISO ClinVar Annotator: match by term: FAMILIAL ATYPICAL MOLE-MALIGNANT MELANOMA SYNDROME ClinVar PMID:10201537 PMID:10208439 PMID:25157968 NCBI chrNW_004936588:579,816...601,033 JBrowse link
G Stk19 serine/threonine kinase 19 ISO ClinVar Annotator: match by term: Malignant melanoma of skin ClinVar PMID:26619011 NCBI chrNW_004936727:1,570,650...1,576,796 JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Malignant melanoma of skin
ClinVar Annotator: match by term: Cutaneous melanoma
ClinVar PMID:1349175 PMID:1359493 PMID:1565143 PMID:1565144 PMID:1569604 More... NCBI chrNW_004936595:919,807...935,367 JBrowse link
G Tyr tyrosinase susceptibility ISO DNA:missense mutation:cds:p.R402Q(human) RGD PMID:21906913 RGD:8694390 NCBI chrNW_004936736:421,623...519,085 JBrowse link
G Vdr vitamin D receptor susceptibility
no_association
ISO DNA:missense mutation, silent mutation: :p,M1T, p.I352 (c.1056T>C) (rs2228570, rs731236) (human)
DNA:SNPs: :multiple
RGD PMID:16990805 PMID:19615888 PMID:22576141 RGD:8157629 RGD:8158071 RGD:8158075 NCBI chrNW_004936512:5,741,836...5,800,999 JBrowse link
uveal melanoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bap1 BRCA1 associated protein 1 disease_progression ISO mRNA,protein:decreased expression: :
ClinVar Annotator: match by term: Uveal melanoma
CTD Direct Evidence: marker/mechanism
RGD
ClinVar
CTD
PMID:21874000 PMID:25147369 PMID:25231345 PMID:26719535 PMID:31186267 RGD:9586037 NCBI chrNW_004936473:3,239,009...3,247,806 JBrowse link
G Brca2 BRCA2 DNA repair associated susceptibility ISO DNA:mutations: : RGD PMID:22187320 RGD:9068467 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Cysltr2 cysteinyl leukotriene receptor 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:27089179 NCBI chrNW_004936565:1,917,970...1,919,027 JBrowse link
G Eif1ax eukaryotic translation initiation factor 1A X-linked ISO CTD Direct Evidence: marker/mechanism CTD PMID:23793026 NCBI chrNW_004936624:4,010,912...4,029,520 JBrowse link
G Gna11 G protein subunit alpha 11 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma of the Uvea
CTD
ClinVar
PMID:1328859 PMID:2549426 PMID:21083380 PMID:21444680 PMID:22733540 More... NCBI chrNW_004936588:1,770,777...1,789,143 JBrowse link
G Igf1 insulin like growth factor 1 disease_progression ISO RGD PMID:23197685 RGD:8548834 NCBI chrNW_004936492:11,709,623...11,784,028 JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase ISO CTD Direct Evidence: marker/mechanism CTD PMID:30619488 NCBI chrNW_004936594:1,760,924...1,771,022 JBrowse link
G Kdm5b lysine demethylase 5B severity ISO protein:increased expression:uvea (human) RGD PMID:22669717 RGD:9587775 NCBI chrNW_004936567:1,782,056...1,860,861 JBrowse link
G Kdr kinase insert domain receptor disease_progression ISO RGD PMID:21984395 RGD:8549718 NCBI chrNW_004936482:17,537,697...17,581,320 JBrowse link
G LOC101969640 C-reactive protein disease_progression ISO RGD PMID:23057648 RGD:9491834 NCBI chrNW_004936740:885,855...888,854 JBrowse link
G LOC101971998 guanine nucleotide-binding protein G(q) subunit alpha ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Melanoma of the Uvea
CTD
ClinVar
PMID:1328859 PMID:2549426 PMID:18719078 PMID:19078957 PMID:21083380 More... NCBI chrNW_004936503:13,098,517...13,276,106 JBrowse link
G Mcam melanoma cell adhesion molecule disease_progression ISO RGD PMID:19958117 RGD:7364775 NCBI chrNW_004936542:4,235,914...4,244,981 JBrowse link
G Plcb4 phospholipase C beta 4 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Uveal melanoma
CTD
ClinVar
PMID:27089179 PMID:31186267 NCBI chrNW_004936485:9,991,731...10,353,231 JBrowse link
G Prame PRAME nuclear receptor transcriptional regulator severity ISO mRNA:increased expression:uvea (human) RGD PMID:27486988 RGD:11535039 NCBI chrNW_004936619:1,748,337...1,751,748 JBrowse link
G Serpine1 serpin family E member 1 treatment ISO human gene in mouse model RGD PMID:9326241 RGD:8547806 NCBI chrNW_004936543:1,032,543...1,040,956 JBrowse link
G Serpinf1 serpin family F member 1 severity ISO RGD PMID:23793989 RGD:8554893 NCBI chrNW_004936538:7,885,816...7,898,308 JBrowse link
G Sf3b1 splicing factor 3b subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:23313955 PMID:23793026 NCBI chrNW_004936506:1,749,591...1,790,860 JBrowse link
G Tmem127 transmembrane protein 127 ISO ClinVar Annotator: match by term: Uveal melanoma ClinVar PMID:25741868 PMID:28492532 NCBI chrNW_004936744:344,356...359,086 JBrowse link
G Vegfa vascular endothelial growth factor A ISO protein:increased expression:iris, ciliary body, vitreous body; RGD PMID:11914216 RGD:7483591 NCBI chrNW_004936476:16,245,134...16,261,180 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 13019
    disease of cellular proliferation 6279
      Neoplasms by Histologic Type 4292
        Nevi and Melanomas 325
          Nevus + 17
          melanoma + 321
paths to the root