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ONTOLOGY REPORT - ANNOTATIONS


Term:Calculi
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Accession:DOID:9005602 term browser browse the term
Definition:An abnormal concretion occurring mostly in the urinary and biliary tracts, usually composed of mineral salts. Also called stones.
Synonyms:exact_synonym: Biliary or Urinary Stones;   Calculus
 primary_id: MESH:D002137;   RDO:0005094
For additional species annotation, visit the Alliance of Genome Resources.


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bladder calculus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:11554173
Gallbladder Disease 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:7240710
RGD:14694981
RGD:8554872
Gallstones term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcg8 ATP binding cassette subfamily G member 8 JBrowse link 6 7,961,413 7,980,708 RGD:11554173
G Cck cholecystokinin JBrowse link 8 130,120,525 130,127,515 RGD:11554173
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:11554173
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:11554173
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 JBrowse link 9 95,295,701 95,302,822 RGD:10769331
RGD:10769338
Kidney Calculi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bglap bone gamma-carboxyglutamate protein JBrowse link 2 187,741,770 187,748,445 RGD:7207412
G Car2 carbonic anhydrase 2 JBrowse link 2 88,097,740 88,112,868 RGD:1600710
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:11554173
G Cd44 CD44 molecule (Indian blood group) JBrowse link 3 92,695,083 92,783,820 RGD:2289370
G Cldn14 claudin 14 JBrowse link 11 34,132,581 34,142,813 RGD:11554173
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:6893526
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:11554173
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6893463
G Mgp matrix Gla protein JBrowse link 4 170,856,783 170,860,105 RGD:1582511
G Mpo myeloperoxidase JBrowse link 10 75,087,892 75,098,260 RGD:7174700
G Pomc proopiomelanocortin JBrowse link 6 28,382,937 28,388,771 RGD:11554173
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:11554173
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:1581372
RGD:11554173
RGD:6903839
RGD:1581334
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 JBrowse link 3 119,258,189 119,347,084 RGD:11554173
prostate calculus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ltf lactotransferrin JBrowse link 8 119,290,416 119,313,261 RGD:7243107
Renal Hypouricemia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc22a12 solute carrier family 22 member 12 JBrowse link 1 221,910,787 221,919,277 RGD:7240710
RGD:8554872
RGD:11554173
G Slc2a9 solute carrier family 2 member 9 JBrowse link 14 77,067,537 77,192,702 RGD:11554173
Ureteral Calculi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cat catalase JBrowse link 3 93,379,872 93,412,058 RGD:11554173
G Gsr glutathione-disulfide reductase JBrowse link 16 62,197,617 62,239,987 RGD:11554173
G Gstp1 glutathione S-transferase pi 1 JBrowse link 1 219,291,679 219,294,147 RGD:11554173
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:11554173
Urinary Calculi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Add3 adducin 3 JBrowse link 1 273,854,195 273,961,982 RGD:2317717
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:6893519
G Il1rn interleukin 1 receptor antagonist JBrowse link 3 1,449,778 1,468,624 RGD:6907399
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:1581368
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1331525

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Term Annotations click to browse term
  disease 15639
    Pathological Conditions, Signs and Symptoms 8061
      Anatomical Pathological Conditions 1341
        Calculi 36
          Dental Calculus 0
          Gallstones + 6
          Salivary Calculi + 0
          Testicular Microlithiasis 0
          Urinary Calculi + 30
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.