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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Familial Prostate Cancer
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Accession:DOID:9005539 term browser browse the term
Synonyms:exact_synonym: hereditary prostate cancer
 related_synonym: prostate cancer susceptibility
 primary_id: MESH:C537243



show annotations for term's descendants           Sort by:
Familial Prostate Cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 2:58,805,737...58,842,618
Ensembl chr 2:58,805,834...58,852,684
JBrowse link
G AR androgen receptor ISO ClinVar Annotator: match by term: Prostate cancer susceptibility ClinVar PMID:8530589 PMID:10589774 PMID:11103816 PMID:28492532 NCBI chr24:34,713,390...34,731,461
NCBI chr  X:51,969,785...52,167,450
Ensembl chr  X:51,969,785...52,151,912
JBrowse link
G ARHGAP6 Rho GTPase activating protein 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr  X:7,704,838...8,188,358
Ensembl chr  X:7,706,156...7,951,557
JBrowse link
G ATAT1 alpha tubulin acetyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr12:441,847...456,349
Ensembl chr12:441,895...456,152
JBrowse link
G ATM ATM serine/threonine kinase ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:15928302 PMID:16199547 PMID:16941484 PMID:17124347 PMID:17910737 More... NCBI chr 5:24,180,129...24,297,207
Ensembl chr 5:24,182,135...24,297,207
JBrowse link
G B3GAT1 beta-1,3-glucuronyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 5:741,231...747,641
Ensembl chr 5:745,747...748,899
JBrowse link
G BCAS1 brain enriched myelin associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr24:39,702,242...39,799,787
Ensembl chr24:39,699,931...39,800,185
JBrowse link
G BCL2 BCL2 apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G BCL2L11 BCL2 like 11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr17:35,619,804...35,665,782
Ensembl chr17:35,619,582...35,664,587
JBrowse link
G BLTP3A bridge-like lipid transfer protein family member 3A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr12:4,027,333...4,087,988
Ensembl chr12:4,027,455...4,089,578
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:17319787 PMID:18489799 PMID:20104584 PMID:21203900 PMID:25525159 More... NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G C5H11orf65 chromosome 5 C11orf65 homolog ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:15928302 PMID:16941484 PMID:17124347 PMID:17910737 PMID:19431188 More... NCBI chr 5:24,106,696...24,166,686
Ensembl chr 5:24,121,409...24,166,291
JBrowse link
G CASP8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr37:10,362,071...10,402,108
Ensembl chr37:10,391,048...10,401,822
JBrowse link
G CDCA7 cell division cycle associated 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr36:17,572,311...17,586,414 JBrowse link
G CDH1 cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961571 PMID:16189707 NCBI chr 5:80,757,508...80,834,878
Ensembl chr 5:80,757,508...80,834,878
JBrowse link
G CDKN1B cyclin dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr27:33,609,154...33,613,558
Ensembl chr27:33,611,760...33,612,906
JBrowse link
G CHD3 chromodomain helicase DNA binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 5:32,747,341...32,768,114
Ensembl chr 5:32,747,397...32,766,965
JBrowse link
G CHEK2 checkpoint kinase 2 ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:21876083 PMID:24713400 PMID:25741868 PMID:26467025 PMID:27083775 More... NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624
JBrowse link
G COL23A1 collagen type XXIII alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr11:2,997,504...3,319,948
Ensembl chr11:2,997,021...3,318,867
JBrowse link
G CYP3A4 cytochrome P450, family 3, subfamily A, polypeptide 4 no_association ISO RGD PMID:15180491 RGD:5685600 NCBI chr 6:9,836,685...9,869,520
Ensembl chr 6:9,777,659...9,869,352
JBrowse link
G DENND4B DENN domain containing 4B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 7:43,185,637...43,198,309
Ensembl chr 7:43,185,550...43,198,577
JBrowse link
G DLA-DOA HLA class II histocompatibility antigen, DO alpha chain-like ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr12:2,563,673...2,568,328
Ensembl chr12:2,563,673...2,568,328
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G DOCK2 dedicator of cytokinesis 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 4:41,779,950...42,177,957
Ensembl chr 4:41,780,436...42,235,177
JBrowse link
G EMSY EMSY transcriptional repressor, BRCA2 interacting ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr21:22,149,131...22,289,857
Ensembl chr21:22,149,127...22,289,875
JBrowse link
G FBRSL1 fibrosin like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr26:535,522...613,134
Ensembl chr26:531,248...613,183
JBrowse link
G HAUS6 HAUS augmin like complex subunit 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr11:38,889,977...38,935,396
Ensembl chr11:38,893,544...38,935,136
JBrowse link
G HOXB13 homeobox B13 ISO ClinVar Annotator: match by term: Prostate cancer susceptibility ClinVar PMID:8756292 PMID:15964834 PMID:17138648 PMID:22236224 PMID:22714738 More... NCBI chr 9:24,958,020...24,961,353
Ensembl chr 9:24,959,183...24,961,588
JBrowse link
G INCENP inner centromere protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:54,361,376...54,384,649
Ensembl chr18:54,361,378...54,384,641
JBrowse link
G ITGB8 integrin subunit beta 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr14:34,370,957...34,449,091
Ensembl chr14:34,349,232...34,444,235
JBrowse link
G KDM2A lysine demethylase 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:50,178,511...50,294,097
Ensembl chr18:50,181,024...50,291,127
JBrowse link
G KNL1 kinetochore scaffold 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr30:7,753,515...7,825,019
Ensembl chr30:7,753,432...7,821,588
JBrowse link
G LARP4B La ribonucleoprotein 4B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 2:34,026,788...34,122,144
Ensembl chr 2:34,026,534...34,119,443
JBrowse link
G LOC119865560 U6 spliceosomal RNA ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016
G LOC119871686 U6 spliceosomal RNA ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016
G MAD1L1 mitotic arrest deficient 1 like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 6:14,889,126...15,236,194
Ensembl chr 6:14,882,875...15,236,192
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:21,232,260...21,283,687
Ensembl chr 1:21,235,967...21,283,346
JBrowse link
G MBNL1 muscleblind like splicing regulator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr23:46,697,755...46,941,300
Ensembl chr23:46,737,790...46,938,233
JBrowse link
G MECOM MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr34:33,747,495...34,299,389
Ensembl chr34:33,748,843...34,299,276
JBrowse link
G MMP14 matrix metallopeptidase 14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 8:3,183,419...3,193,079
Ensembl chr 8:3,183,606...3,194,122
JBrowse link
G MOB2 MOB kinase activator 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:45,698,096...45,776,402
Ensembl chr18:45,682,790...45,776,349
JBrowse link
G MSH6 mutS homolog 6 ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:18269114 PMID:24362816 PMID:25741868 PMID:28492532 NCBI chr10:49,825,330...49,838,036
Ensembl chr10:49,803,898...49,838,028
JBrowse link
G MYO9B myosin IXB ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr20:45,512,286...45,582,619
Ensembl chr20:45,512,276...45,582,619
JBrowse link
G OACYL O-acyltransferase like ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:17,074,103...17,143,844 JBrowse link
G PAX9 paired box 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 8:15,221,852...15,239,629
Ensembl chr 8:15,221,730...15,239,099
JBrowse link
G PKNOX2 PBX/knotted 1 homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 5:9,054,138...9,363,750
Ensembl chr 5:9,056,134...9,178,159
JBrowse link
G POU2F2 POU class 2 homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:112,165,908...112,252,712
Ensembl chr 1:112,220,511...112,321,672
JBrowse link
G PPFIBP2 PPFIA binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr21:31,165,386...31,335,231
Ensembl chr21:31,165,194...31,334,973
JBrowse link
G RASSF3 Ras association domain family member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr10:7,323,272...7,353,378
Ensembl chr10:7,212,460...7,351,395
JBrowse link
G RFX7 regulatory factor X7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr30:21,305,458...21,437,901
Ensembl chr30:21,308,282...21,437,935
JBrowse link
G RNASEL ribonuclease L ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr 7:15,978,055...16,001,604
Ensembl chr 7:15,856,151...16,001,569
JBrowse link
G RNF43 ring finger protein 43 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 9:32,996,668...33,061,781
Ensembl chr 9:32,997,937...33,060,313
JBrowse link
G RNLS renalase, FAD dependent amine oxidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr26:38,137,662...38,413,666
Ensembl chr26:38,083,371...38,414,033
JBrowse link
G SUGCT succinyl-CoA:glutarate-CoA transferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:9,051,920...9,766,342
Ensembl chr18:9,030,745...9,766,277
JBrowse link
G TCF4 transcription factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:20,060,788...20,417,367
Ensembl chr 1:20,060,788...20,417,348
JBrowse link
G TCF7L2 transcription factor 7 like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr28:23,966,079...24,162,775
Ensembl chr28:23,966,073...24,163,737
JBrowse link
G TOR1A torsin family 1 member A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 9:54,017,895...54,027,049
Ensembl chr 9:54,017,952...54,026,680
JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:4,224,875...4,229,755
Ensembl chr 1:4,226,210...4,246,762
JBrowse link
G TTC28 tetratricopeptide repeat domain 28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr26:21,424,249...22,049,579
Ensembl chr26:21,427,961...22,240,624
JBrowse link
Prostate Cancer, Hereditary, 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRAF B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:11727201 PMID:12068308 PMID:12460918 PMID:12460919 PMID:12673792 More... NCBI chr16:8,222,909...8,318,179
Ensembl chr16:8,222,907...8,317,906
JBrowse link
G HOXB13 homeobox B13 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:9536098 PMID:17576681 PMID:25741868 PMID:26467025 PMID:28492532 NCBI chr 9:24,958,020...24,961,353
Ensembl chr 9:24,959,183...24,961,588
JBrowse link
G HRAS HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar NCBI chr18:25,642,844...25,644,717
Ensembl chr18:25,642,844...25,644,717
JBrowse link
G KRAS KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:17056636 PMID:17468812 PMID:17704260 PMID:18386799 PMID:20949621 More... NCBI chr27:22,261,753...22,296,704
Ensembl chr27:22,257,941...22,293,369
JBrowse link
G LRRC56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar NCBI chr18:25,647,024...25,662,646
Ensembl chr18:25,647,882...25,664,220
JBrowse link
G NRAS NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar NCBI chr17:52,411,733...52,418,788
Ensembl chr17:52,411,733...52,418,788
JBrowse link
G PTEN phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:9467011 PMID:9600246 PMID:10051160 PMID:12786840 PMID:16773562 More... NCBI chr26:37,853,148...37,913,176
Ensembl chr26:37,835,661...37,913,176
JBrowse link
G RNASEL ribonuclease L ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 OMIM
ClinVar
PMID:11799394 PMID:12415269 PMID:16609730 PMID:25741868 PMID:28492532 NCBI chr 7:15,978,055...16,001,604
Ensembl chr 7:15,856,151...16,001,569
JBrowse link
G TP53 tumor protein p53 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:12826609 PMID:20522432 PMID:25741868 PMID:27545002 PMID:28492532 More... NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
Prostate Cancer, Hereditary, 12 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EHBP1 EH domain binding protein 1 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 12 OMIM
ClinVar
PMID:18264098 NCBI chr10:62,480,466...62,825,978
Ensembl chr10:62,366,512...62,825,693
JBrowse link
Prostate Cancer, Hereditary, 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAC2 elaC ribonuclease Z 2 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 2 ClinVar
OMIM
PMID:10986046 PMID:11175785 PMID:11254448 PMID:11507049 PMID:12515253 More... NCBI chr 5:36,957,901...36,978,646
Ensembl chr 5:36,958,264...36,978,606
JBrowse link
Prostate Cancer, Hereditary, 9 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXB13 homeobox B13 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 9 OMIM
ClinVar
PMID:8756292 PMID:15964834 PMID:17138648 PMID:22236224 PMID:22714738 More... NCBI chr 9:24,958,020...24,961,353
Ensembl chr 9:24,959,183...24,961,588
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17773
    disease of anatomical entity 15130
      reproductive system disease 2891
        reproductive organ cancer 1234
          male reproductive organ cancer 821
            prostate cancer 817
              Familial Prostate Cancer 69
                Prostate Cancer, Hereditary, 1 9
                Prostate Cancer, Hereditary, 10 0
                Prostate Cancer, Hereditary, 11 0
                Prostate Cancer, Hereditary, 12 1
                Prostate Cancer, Hereditary, 13 0
                Prostate Cancer, Hereditary, 14 0
                Prostate Cancer, Hereditary, 15 0
                Prostate Cancer, Hereditary, 2 1
                Prostate Cancer, Hereditary, 3 0
                Prostate Cancer, Hereditary, 4 0
                Prostate Cancer, Hereditary, 5 0
                Prostate Cancer, Hereditary, 6 0
                Prostate Cancer, Hereditary, 7 0
                Prostate Cancer, Hereditary, 8 0
                Prostate Cancer, Hereditary, 9 1
                Prostate Cancer, Hereditary, X-Linked 1 0
                Prostate Cancer, Hereditary, X-Linked 2 0
Path 2
Term Annotations click to browse term
  disease 17773
    disease of anatomical entity 15130
      Urogenital Diseases 4710
        reproductive system disease 2891
          male reproductive system disease 1895
            Male Genital Neoplasms 1304
              Prostatic Neoplasms 1278
                prostate cancer 817
                  Familial Prostate Cancer 69
                    Prostate Cancer, Hereditary, 1 9
                    Prostate Cancer, Hereditary, 10 0
                    Prostate Cancer, Hereditary, 11 0
                    Prostate Cancer, Hereditary, 12 1
                    Prostate Cancer, Hereditary, 13 0
                    Prostate Cancer, Hereditary, 14 0
                    Prostate Cancer, Hereditary, 15 0
                    Prostate Cancer, Hereditary, 2 1
                    Prostate Cancer, Hereditary, 3 0
                    Prostate Cancer, Hereditary, 4 0
                    Prostate Cancer, Hereditary, 5 0
                    Prostate Cancer, Hereditary, 6 0
                    Prostate Cancer, Hereditary, 7 0
                    Prostate Cancer, Hereditary, 8 0
                    Prostate Cancer, Hereditary, 9 1
                    Prostate Cancer, Hereditary, X-Linked 1 0
                    Prostate Cancer, Hereditary, X-Linked 2 0
paths to the root