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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Thymus Neoplasms
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Accession:DOID:9005161 term browser browse the term
Definition:Tumors or cancer of the THYMUS GLAND.
Synonyms:exact_synonym: Thymus Neoplasm;   Thymus Tumor;   Thymus Tumors;   neoplasm of thymus;   thymic neoplasm;   thymic neoplasms;   thymic tumor;   thymic tumors
 primary_id: MESH:D013953
 alt_id: RDO:0002627
 xref: EFO:0002626;   NCI:C3412



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Thymus Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD274 CD274 molecule ISO CTD Direct Evidence: marker/mechanism CTD PMID:28736328 NCBI chr 1:216,646,378...216,792,731
Ensembl chr 1:216,660,041...216,792,724
JBrowse link
G TP53 tumor protein p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:10850423 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818
JBrowse link
Thymic Epithelial Tumor term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2I general transcription factor IIi ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chr 3:11,656,928...11,811,426
Ensembl chr 3:11,671,575...11,811,423
JBrowse link
thymoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP4 aquaporin 4 ISO associated with Myasthenia Gravis RGD PMID:20728226 RGD:5148025 NCBI chr 6:111,407,632...111,422,169
Ensembl chr 6:111,407,639...111,422,109
JBrowse link
G BAP1 BRCA1 associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chr13:34,544,570...34,553,538
Ensembl chr13:34,544,581...34,553,483
JBrowse link
G BIRC5 baculoviral IAP repeat containing 5 ameliorates ISO mRNA:increased expression:thymus (human) RGD PMID:31964418 RGD:153344516 NCBI chr12:3,747,276...3,755,214
Ensembl chr12:3,747,279...3,755,215
JBrowse link
G BSG basigin ISO CTD Direct Evidence: marker/mechanism CTD PMID:36574092 NCBI chr 2:77,735,586...77,743,451 JBrowse link
G CDKN2A cyclin dependent kinase inhibitor 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chr 1:200,774,496...200,799,149
Ensembl chr 1:200,792,469...200,798,854
JBrowse link
G CYLD CYLD lysine 63 deubiquitinase ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chr 6:34,058,091...34,121,939
Ensembl chr 6:34,059,081...34,121,264
JBrowse link
G DNMT3B DNA methyltransferase 3 beta susceptibility ISO associated with Myasthenia Gravis;DNA:SNP:promoter: -579G>T(human) RGD PMID:24260492 RGD:9589098 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,345,816...36,386,072
JBrowse link
G HRAS HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Thymoma ClinVar PMID:20859122 PMID:24224811 PMID:25157968 PMID:25741868 PMID:26619011 More... NCBI chr 2:299,662...302,539
Ensembl chr 2:299,660...302,501
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase ISO ClinVar Annotator: match by term: Thymoma ClinVar PMID:7530509 PMID:9438854 PMID:10224103 PMID:10680913 PMID:11276010 More... NCBI chr 8:41,402,334...41,492,306
Ensembl chr 8:41,402,043...41,493,734
JBrowse link
G LOC100622859 baculoviral IAP repeat-containing protein 2 ameliorates ISO mRNA:increased expression:thymus (human) RGD PMID:31964418 RGD:153344516 NCBI chr 9:33,041,592...33,062,865
Ensembl chr 9:33,041,663...33,062,854
JBrowse link
G LRRC56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Thymoma ClinVar PMID:20859122 PMID:24224811 PMID:25157968 PMID:25741868 PMID:26619011 More... NCBI chr 2:303,836...323,701
Ensembl chr 2:304,430...323,699
JBrowse link
G NAIP NLR family apoptosis inhibitory protein ameliorates ISO mRNA:increased expression:thymus (human) RGD PMID:31964418 RGD:153344516 NCBI chr16:47,700,869...47,710,036 JBrowse link
G PBRM1 polybromo 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chr13:34,689,718...34,821,117
Ensembl chr13:34,689,726...34,820,952
JBrowse link
G TP53 tumor protein p53 ISO CTD Direct Evidence: marker/mechanism CTD PMID:24974848 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,644...52,953,818
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17416
    disease of anatomical entity 14866
      endocrine system disease 5919
        thymus gland disease 17
          Thymus Neoplasms 16
            Thymic Epithelial Tumor 1
            thymus cancer + 14
Path 2
Term Annotations click to browse term
  disease 17416
    disease of anatomical entity 14866
      Immune & Inflammatory Diseases 4947
        immune system disease 4285
          lymphatic system disease 1573
            thymus gland disease 17
              Thymus Neoplasms 16
                Thymic Epithelial Tumor 1
                thymus cancer + 14
paths to the root