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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Empyema
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Accession:DOID:9004425 term browser browse the term
Definition:Presence of pus in a hollow organ or body cavity.
Synonyms:primary_id: MESH:D004653;   RDO:0005462
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
 
pleural empyema term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plau plasminogen activator, urokinase ISO Gene product used in treatment of disease RGD PMID:20304453 RGD:4891955 NCBI chr15:3,644,296...3,650,765
Ensembl chr15:3,644,769...3,650,819
JBrowse link
G Tnc tenascin C ISO protein:increased expression:pleura RGD PMID:10950882 RGD:4889594 NCBI chr 5:79,789,686...79,874,555
Ensembl chr 5:79,789,671...79,874,671
JBrowse link
G Trem1 triggering receptor expressed on myeloid cells 1 treatment IDA RGD PMID:20819512 RGD:127284851 NCBI chr 9:14,727,887...14,743,371
Ensembl chr 9:14,727,976...14,809,447
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 17150
    Pathological Conditions, Signs and Symptoms 10222
      Pathologic Processes 6694
        Inflammation 2324
          Suppuration 68
            Empyema 3
              pleural empyema + 3
              subdural empyema 0
paths to the root