RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Sudden Hearing Loss
Accession: DOID:9003817
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Definition: Sensorineural hearing loss which develops suddenly over a period of hours or a few days. It varies in severity from mild to total deafness. Sudden deafness can be due to head trauma, vascular diseases, infections, or can appear without obvious cause or warning.
Synonyms: exact_synonym: SSHL; SSNHL; Sudden Deafness; sudden sensorineural hearing loss
related_synonym: idiopathic sudden sensorineural hearing loss
primary_id: MESH:D003639
alt_id: RDO:0005310
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Gpx3
glutathione peroxidase 3
ISO
DNA:SNP: :rs3805435 (human)
RGD
PMID:28738977
RGD:401827121
NCBI chr11:54,793,680...54,801,213
Ensembl chr11:54,793,279...54,801,203
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H2-Aa
histocompatibility 2, class II antigen A, alpha
treatment
ISO
DNA:polymorphism: : HLA-DQA1*01
RGD
PMID:11493203
RGD:8547564
NCBI chr17:34,501,718...34,506,797
Ensembl chr17:34,501,718...34,506,797
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H2-Eb1
histocompatibility 2, class II antigen E beta
susceptibility
ISO
DNA:polymorphism: :HLA-DRB1*14,HLA-DRB1*04(human) DNA:polymorphism: :HLA-DRB1*0403(human)
RGD
PMID:11099146 PMID:16303674
RGD:7365092 , RGD:7365115
NCBI chr17:34,524,841...34,535,648
Ensembl chr17:34,524,841...34,535,648
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Hspa1a
heat shock protein 1A
ISO
DNA:SNP, haplotype: :rs1043618 (human)
RGD
PMID:22922572
RGD:8662465
NCBI chr17:35,188,335...35,191,132
Ensembl chr17:35,188,166...35,191,132
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Hspa1b
heat shock protein 1B
ISO
DNA:SNP, haplotype: :rs2763979 (human)
RGD
PMID:22922572
RGD:8662465
NCBI chr17:35,175,405...35,178,214
Ensembl chr17:35,175,412...35,178,214
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Hspa1l
heat shock protein 1-like
ISO
DNA:SNP, haplotype: :rs2075800 (human)
RGD
PMID:22922572
RGD:8662465
NCBI chr17:35,191,679...35,198,204
Ensembl chr17:35,191,679...35,198,261
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Igf1
insulin-like growth factor 1
treatment
ISO
RGD
PMID:21108784
RGD:8548824
NCBI chr10:87,694,127...87,772,909
Ensembl chr10:87,694,127...87,772,904
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Il4ra
interleukin 4 receptor, alpha
ISO
DNA:SNP: :p.Q576R (rs 180275) (human)
RGD
PMID:16280132
RGD:7829784
NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646
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Il6
interleukin 6
susceptibility
ISO
protein:increased expression:serum: DNA:polymorphism:cds:p.C572G(human)
RGD
PMID:11189185 PMID:22385075
RGD:7394753 , RGD:8547982
NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979
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Itga2
integrin alpha 2
susceptibility
ISO
DNA:SNP: :807C>T (human)
RGD
PMID:16525573
RGD:1582302
NCBI chr13:114,969,617...115,068,588
Ensembl chr13:114,969,617...115,068,636
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Lta
lymphotoxin A
ISO
DNA:polymorphism:intron:252A>G (human)
RGD
PMID:19833626
RGD:8548795
NCBI chr17:35,422,141...35,424,568
Ensembl chr17:35,422,141...35,424,327
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Mmp1a
matrix metallopeptidase 1a (interstitial collagenase)
ISO
DNA:insertion, SNP, haplotypes:promoter:-1607_-1606insG (rs1799750), -519A>G (human)
RGD
PMID:21154774
RGD:8549733
NCBI chr 9:7,464,141...7,476,870
Ensembl chr 9:7,464,141...7,476,857
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Mmp1b
matrix metallopeptidase 1b (interstitial collagenase)
ISO
DNA:insertion, SNP, haplotypes:promoter:-1607_-1606insG (rs1799750), -519A>G (human)
RGD
PMID:21154774
RGD:8549733
NCBI chr 9:7,367,670...7,388,026
Ensembl chr 9:7,368,239...7,388,047
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Mthfr
methylenetetrahydrofolate reductase
no_association susceptibility
ISO
DNA:SNP: :677C>T(human) DNA:SNP:cds:677C>T(human) DNA:SNPs:cds:677C>T,1298A>C(human) CTD Direct Evidence: marker/mechanism
CTD RGD
PMID:16275406 PMID:20798492 PMID:16572609 PMID:15775757
RGD:7387236 , RGD:7387240 , RGD:7387243
NCBI chr 4:148,123,534...148,144,019
Ensembl chr 4:148,123,534...148,144,008
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Mtr
5-methyltetrahydrofolate-homocysteine methyltransferase
susceptibility
ISO
DNA:SNP::2756A>G(human)
RGD
PMID:16778415
RGD:8694081
NCBI chr13:12,196,217...12,273,090
Ensembl chr13:12,197,598...12,272,999
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Nos3
nitric oxide synthase 3, endothelial cell
ISO
DNA:snp:cds:p.E298D (rs1799983) (human)
RGD
PMID:23560644
RGD:7771541
NCBI chr 5:24,569,772...24,589,472
Ensembl chr 5:24,569,808...24,589,472
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Serpine1
serine (or cysteine) peptidase inhibitor, clade E, member 1
susceptibility
ISO
DNA:deletion, haplotype:promoter:g.-676_-674delG (human)
RGD
PMID:22672326
RGD:8547731
NCBI chr 5:137,090,358...137,101,126
Ensembl chr 5:137,090,358...137,101,122
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Tnf
tumor necrosis factor
ISO
protein:increased expression:serum:
RGD
PMID:11189185
RGD:7394753
NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
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