RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Enterobacteriaceae Infections
Accession: DOID:9003491
browse the term
Definition: Infections with bacteria of the family ENTEROBACTERIACEAE.
Synonyms: exact_synonym: Enterobacteriaceae Infection; Enterobacterial Infection; Enterobacterial Infections
primary_id: MESH:D004756
xref: EFO:1001313
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Csf3
colony stimulating factor 3
IEP
RGD
PMID:9835289
RGD:11039473
NCBI chr10:84,157,485...84,159,860
Ensembl chr10:83,661,207...83,663,603
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Fgf7
fibroblast growth factor 7
ISO
mRNA:increased expression:distal colon (mouse)
RGD
PMID:10338516
RGD:126928149
NCBI chr 3:133,734,557...133,786,678
Ensembl chr 3:113,281,283...113,332,929
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Abcb1a
ATP binding cassette subfamily B member 1A
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24498193
NCBI chr 4:26,312,403...26,488,456
Ensembl chr 4:25,158,362...25,442,709
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Ccl4
C-C motif chemokine ligand 4
IEP
mRNA:increased expression:brain
RGD
PMID:16238536
RGD:5683919
NCBI chr10:68,963,893...68,965,728
Ensembl chr10:68,452,052...68,468,231
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Hba-a1
hemoglobin alpha, adult chain 1
treatment
ISO
RGD
PMID:18786935
RGD:10449443
NCBI chr10:15,841,724...15,842,580
Ensembl chr10:15,307,815...15,338,392
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Hba-a2
hemoglobin alpha, adult chain 2
treatment
ISO
RGD
PMID:18786935
RGD:10449443
NCBI chr10:15,828,291...15,829,138
Ensembl chr10:15,307,815...15,338,392 Ensembl chr10:15,307,815...15,338,392
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Hba-a3
hemoglobin alpha, adult chain 3
treatment
ISO
RGD
PMID:18786935
RGD:10449443
NCBI chr10:15,816,099...15,816,943
Ensembl chr10:15,311,634...15,312,481
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Irak3
interleukin-1 receptor-associated kinase 3
treatment
ISO
RGD
PMID:27832756
RGD:34888235
NCBI chr 7:57,538,522...57,600,166
Ensembl chr 7:55,653,962...55,713,121
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Lcn2
lipocalin 2
exacerbates
ISO
protein:increased expression:serum
RGD
PMID:25234944 PMID:16446425 PMID:25234944
RGD:126725084 , RGD:126779557 , RGD:126725084
NCBI chr 3:36,078,432...36,081,851
Ensembl chr 3:15,680,687...15,684,095
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Muc2
mucin 2, oligomeric mucus/gel-forming
IEP
RGD
PMID:23798529
RGD:7349358
NCBI chr 1:206,225,775...206,261,280
Ensembl chr 1:196,799,517...196,831,756
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Ntrk2
neurotrophic receptor tyrosine kinase 2
onset
IEP
protein:decreased expression:hippocampus
RGD
PMID:21411668
RGD:5684914
NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136
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Plac8
placenta associated 8
severity
ISO
RGD
PMID:17404296
RGD:40924563
NCBI chr14:9,356,950...9,378,586
Ensembl chr14:9,063,048...9,074,264
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Rnasel
ribonuclease L
severity
ISO
RGD
PMID:19075243
RGD:40902812
NCBI chr13:68,446,641...68,460,804
Ensembl chr13:65,901,459...65,908,704
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Slc6a4
solute carrier family 6 member 4
ISO
RGD
PMID:19747920
RGD:36947380
NCBI chr10:62,322,688...62,357,060
Ensembl chr10:61,826,123...61,858,384
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Tnf
tumor necrosis factor
IEP
protein:increased expression:serum (rat)
RGD
PMID:9466473
RGD:38508904
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
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Tlr2
toll-like receptor 2
ISO
mRNA:increased expression: :
RGD
PMID:12781911
RGD:7794740
NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
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Tlr4
toll-like receptor 4
ISO
mRNA:increased expression: :
RGD
PMID:12781911
RGD:7794740
NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628
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Tlr7
toll-like receptor 7
ISO
mRNA:increased expression: :
RGD
PMID:12781911
RGD:7794740
NCBI chr X:30,644,324...30,670,796
Ensembl chr X:27,027,425...27,054,754
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Apoe
apolipoprotein E
severity
ISO
RGD
PMID:10998083
RGD:11039489
NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932
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Il6
interleukin 6
treatment
IDA
RGD
PMID:8432613
RGD:11062093
NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178
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Tlr9
toll-like receptor 9
ISO
RGD
PMID:17785831
RGD:5130866
NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
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Il23a
interleukin 23 subunit alpha
severity
ISO
RGD
PMID:16157683
RGD:39457940
NCBI chr 7:1,306,320...1,308,434
Ensembl chr 7:721,809...723,923
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Irak3
interleukin-1 receptor-associated kinase 3
severity
ISO
mRNA:increased expression:lung (mouse)
RGD
PMID:22729155 PMID:20864681
RGD:35316077 , RGD:36049798
NCBI chr 7:57,538,522...57,600,166
Ensembl chr 7:55,653,962...55,713,121
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Lcn2
lipocalin 2
exacerbates ameliorates
ISO
protein:increased expression:lung protein:increased expression:serum
RGD
PMID:29633303 PMID:19342674 PMID:19342674 PMID:19342674 PMID:25234944 PMID:25234944 More...
RGD:126725082 , RGD:126725085 , RGD:126725085 , RGD:126725085 , RGD:126725084 , RGD:126725084
NCBI chr 3:36,078,432...36,081,851
Ensembl chr 3:15,680,687...15,684,095
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Plac8
placenta associated 8
severity
ISO
RGD
PMID:17404296
RGD:40924563
NCBI chr14:9,356,950...9,378,586
Ensembl chr14:9,063,048...9,074,264
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Trem1
triggering receptor expressed on myeloid cells 1
disease_progression
ISO
RGD
PMID:24396044
RGD:126925976
NCBI chr 9:20,259,227...20,276,879
Ensembl chr 9:12,763,819...12,779,203
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Ccr5
C-C motif chemokine receptor 5
resistance
IAGP
DNA:polymorphism:cds:p.H184R (rat)
RGD
PMID:18703167
RGD:4890425
NCBI chr 8:132,629,097...132,660,980
Ensembl chr 8:123,752,325...123,759,260
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Cxcl1
C-X-C motif chemokine ligand 1
ISO
RGD
PMID:21356370
RGD:5134954
NCBI chr14:17,477,542...17,479,321
Ensembl chr14:17,193,365...17,195,215
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Il17a
interleukin 17A
IEP
mRNA,protein:increased expression:lymph node
RGD
PMID:20876291
RGD:4781452
NCBI chr 9:30,640,844...30,644,331
Ensembl chr 9:23,144,402...23,147,889
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Il1b
interleukin 1 beta
ISO
RGD
PMID:20565713
RGD:4142820
NCBI chr 3:137,030,200...137,036,581
Ensembl chr 3:116,577,010...116,583,415
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Mavs
mitochondrial antiviral signaling protein
susceptibility
ISO
RGD
PMID:25064677
RGD:40903046
NCBI chr 3:138,904,673...138,919,129
Ensembl chr 3:118,451,743...118,466,094
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RT1-Ba
RT1 class II, locus Ba
susceptibility
ISO
DNA:haplotype: :
RGD
PMID:17321882
RGD:8547664
NCBI chr20:4,577,057...4,581,650
Ensembl chr20:4,575,134...4,579,744
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RT1-Bb
RT1 class II, locus Bb
susceptibility
ISO
DNA:haplotype: :
RGD
PMID:17321882
RGD:8547664
NCBI chr20:4,598,475...4,604,118
Ensembl chr20:4,596,559...4,607,597
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Adar
adenosine deaminase, RNA-specific
ISO
mRNA:splice variant:liver (mouse)
RGD
PMID:12228285
RGD:125097511
NCBI chr 2:177,436,076...177,475,969
Ensembl chr 2:175,138,403...175,178,282
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Ahr
aryl hydrocarbon receptor
severity
ISO
RGD
PMID:24930766
RGD:39939032
NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:52,234,089...52,271,568
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Aicda
activation-induced cytidine deaminase
severity
ISO
RGD
PMID:29743315
RGD:127285640
NCBI chr 4:157,446,120...157,455,958
Ensembl chr 4:155,774,132...155,783,972
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Ank1
ankyrin 1
ISO
RGD
PMID:23390527
RGD:11041609
NCBI chr16:75,578,824...75,757,464
Ensembl chr16:68,877,504...69,054,759
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Hamp
hepcidin antimicrobial peptide
ISO
RGD
PMID:23390527
RGD:11041609
NCBI chr 1:95,298,332...95,300,271
Ensembl chr 1:86,170,901...86,172,891
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Ido1
indoleamine 2,3-dioxygenase 1
susceptibility
ISO
RGD
PMID:24930766
RGD:39939032
NCBI chr16:74,133,259...74,145,328
Ensembl chr16:67,430,578...67,442,730
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Ifng
interferon gamma
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:16002714
NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375
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Slc11a1
solute carrier family 11 member 1
ISO
RGD
PMID:14734525
RGD:5684962
NCBI chr 9:83,406,327...83,417,252
Ensembl chr 9:75,957,316...75,968,101
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Tlr5
toll-like receptor 5
IEP
mRNA, protein:increased expression:jejunum, colon (rat)
RGD
PMID:20529359
RGD:5129497
NCBI chr13:97,166,430...97,190,642
Ensembl chr13:94,634,801...94,657,738
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Coq7
coenzyme Q7, hydroxylase
susceptibility
ISO
RGD
PMID:23166727
RGD:10402105
NCBI chr 1:172,836,359...172,851,173
Ensembl chr 1:172,835,188...172,851,158
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Il12b
interleukin 12B
susceptibility
ISO
disseminated BCG and Salmonella enteritidis infection, OMIM:209950
RGD
PMID:9854038
RGD:1600042
NCBI chr10:29,390,300...29,405,194
Ensembl chr10:28,893,008...28,902,903
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Egf
epidermal growth factor
treatment
ISO
RGD
PMID:30615126
RGD:39938959
NCBI chr 2:220,893,660...220,976,331
Ensembl chr 2:218,219,415...218,302,064
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Ido1
indoleamine 2,3-dioxygenase 1
treatment
ISO
RGD
PMID:30615126
RGD:39938959
NCBI chr16:74,133,259...74,145,328
Ensembl chr16:67,430,578...67,442,730
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Il10
interleukin 10
treatment
ISO
RGD
PMID:30615126
RGD:39938959
NCBI chr13:45,024,921...45,029,586
Ensembl chr13:42,472,839...42,477,313
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Il12b
interleukin 12B
treatment
ISO
RGD
PMID:30615126
RGD:39938959
NCBI chr10:29,390,300...29,405,194
Ensembl chr10:28,893,008...28,902,903
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Il1b
interleukin 1 beta
treatment
ISO
RGD
PMID:30615126
RGD:39938959
NCBI chr 3:137,030,200...137,036,581
Ensembl chr 3:116,577,010...116,583,415
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Cftr
CF transmembrane conductance regulator
susceptibility
ISO
DNA:repeats: :CA repeats(human)
RGD
PMID:16078047
RGD:35673348
NCBI chr 4:47,422,084...47,694,646
Ensembl chr 4:46,560,885...46,728,756
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Lta
lymphotoxin alpha
susceptibility
ISO
DNA:SNP::
RGD
PMID:11120931
RGD:36049756
NCBI chr20:3,622,291...3,625,852
Ensembl chr20:3,618,853...3,620,859
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RT1-Bb
RT1 class II, locus Bb
susceptibility
ISO
DNA:polymorphisms::
RGD
PMID:11120931
RGD:36049756
NCBI chr20:4,598,475...4,604,118
Ensembl chr20:4,596,559...4,607,597
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RT1-Db1
RT1 class II, locus Db1
susceptibility
ISO
CTD Direct Evidence: marker/mechanism DNA:polymorphism: :HLA-DRB1*04:05, rs7765379(human) DNA:polymorphisms::
CTD RGD
PMID:25383971 PMID:25383971 PMID:11120931
RGD:36174025 , RGD:36049756
NCBI chr20:4,550,594...4,560,182
Ensembl chr20:4,548,666...4,558,258
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Tlr2
toll-like receptor 2
ISO
RGD
PMID:25667264
RGD:11061268
NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
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Tnf
tumor necrosis factor
susceptibility
ISO
DNA:SNP:promoter:-308G>A (rs1800629) (human)
RGD
PMID:11120931
RGD:36049756
NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629
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