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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Salivary Gland Neoplasms
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Accession:DOID:9003216 term browser browse the term
Definition:Tumors or cancer of the SALIVARY GLANDS.
Synonyms:exact_synonym: Salivary Gland Neoplasm
 narrow_synonym: Benign Salivary Gland Myoepithelioma
 primary_id: MESH:D012468
 xref: EFO:0003826;   EFO:1000119



show annotations for term's descendants           Sort by:
Salivary Gland Neoplasms term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa7 annexin A7 ISO protein:decreased expression:salivary gland RGD PMID:17708571 RGD:2292654 NCBI chr15:3,869,180...3,897,827
Ensembl chr15:3,821,845...3,849,385
JBrowse link
G Aqp1 aquaporin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 4:85,812,784...85,824,964
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Aspm assembly factor for spindle microtubules ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr13:53,625,584...53,674,489
Ensembl chr13:51,074,849...51,123,755
JBrowse link
G Bcl11a BCL11 transcription factor A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr14:102,230,147...102,325,289
Ensembl chr14:98,030,461...98,124,180
JBrowse link
G Ccnd1 cyclin D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 1:209,518,288...209,527,986
Ensembl chr 1:200,089,002...200,098,602
JBrowse link
G Cdh1 cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:17520682 NCBI chr19:51,402,178...51,471,572
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cdkn1a cyclin-dependent kinase inhibitor 1A onset ISO RGD PMID:11103935 RGD:8662404 NCBI chr20:7,150,820...7,161,373
Ensembl chr20:7,149,217...7,159,585
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B disease_progression ISO protein:increased expression:salivary gland: RGD PMID:21109952 RGD:9587467 NCBI chr11:46,670,560...46,690,739
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G Dapk1 death associated protein kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr17:3,935,826...4,096,858
Ensembl chr17:3,930,213...4,090,991
JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr13:105,646,908...105,685,921
Ensembl chr13:103,117,186...103,154,890
JBrowse link
G Efhd1 EF-hand domain family, member D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 9:95,386,155...95,432,800
Ensembl chr 9:87,938,284...87,984,917
JBrowse link
G En1 engrailed homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr13:31,750,892...31,756,477
Ensembl chr13:31,751,545...31,755,943
JBrowse link
G Espl1 extra spindle pole bodies like 1, separase ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 7:135,302,460...135,329,570
Ensembl chr 7:133,424,130...133,450,984
JBrowse link
G Fanca FA complementation group A ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr19:51,304,126...51,362,586
Ensembl chr19:51,304,021...51,362,527
JBrowse link
G Fat1 FAT atypical cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr16:53,909,759...54,029,175
Ensembl chr16:47,177,248...47,296,107
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO associated with Mammary Neoplasms, Experimental RGD PMID:9840935 RGD:2301098 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Gas2 growth arrest-specific 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 1:110,587,952...110,721,572
Ensembl chr 1:101,482,591...101,582,619
JBrowse link
G Gas6 growth arrest specific 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr16:82,747,676...82,778,090
Ensembl chr16:76,045,426...76,075,904
JBrowse link
G Gins2 GINS complex subunit 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
JBrowse link
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 2:169,716,684...169,780,360
Ensembl chr 2:167,418,640...167,481,671
JBrowse link
G Homer3 homer scaffold protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr16:19,166,141...19,176,701
Ensembl chr16:19,132,162...19,142,680
JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Salivary gland neoplasm ClinVar PMID:24006476 PMID:25695684 PMID:25741868 NCBI chr 1:205,712,625...205,729,406
Ensembl chr 1:196,296,263...196,300,615
JBrowse link
G Igfbp2 insulin-like growth factor binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 9:81,864,811...81,892,179
Ensembl chr 9:74,415,546...74,442,937
JBrowse link
G Irx4 iroquois homeobox 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 1:31,859,101...31,868,089
Ensembl chr 1:30,030,561...30,039,549
JBrowse link
G Isyna1 inositol-3-phosphate synthase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr16:18,873,119...18,876,116
Ensembl chr16:18,839,145...18,841,979
JBrowse link
G Itgb4 integrin subunit beta 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr10:101,705,592...101,741,933
Ensembl chr10:101,206,665...101,243,012
JBrowse link
G Jag1 jagged canonical Notch ligand 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Krt15 keratin 15 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr10:85,567,197...85,571,014
Ensembl chr10:85,066,802...85,171,799
JBrowse link
G Krt5 keratin 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 7:134,724,840...134,730,569
Ensembl chr 7:132,846,136...132,851,850
JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Salivary gland neoplasm ClinVar PMID:24006476 PMID:25695684 PMID:25741868 NCBI chr 1:205,729,402...205,744,754
Ensembl chr 1:196,299,846...196,315,172
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr20:42,240,185...42,245,882
Ensembl chr20:40,685,315...40,691,012
JBrowse link
G Mark2 microtubule affinity regulating kinase 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 1:213,890,213...213,955,417
Ensembl chr 1:204,461,030...204,525,652
JBrowse link
G Mier2 MIER family member 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 7:10,153,501...10,169,381
Ensembl chr 7:10,153,649...10,169,378
JBrowse link
G Mlc1 modulator of VRAC current 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 7:120,046,705...120,067,049
Ensembl chr 7:120,046,705...120,067,049
JBrowse link
G Neto2 neuropilin and tolloid like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr19:21,344,299...21,415,524
Ensembl chr19:21,344,289...21,417,023
JBrowse link
G Pcsk1n proprotein convertase subtilisin/kexin type 1 inhibitor ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr  X:17,251,963...17,255,405
Ensembl chr  X:14,580,038...14,583,566
JBrowse link
G Pdzk1 PDZ domain containing 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 2:187,064,995...187,096,348
Ensembl chr 2:184,376,161...184,407,514
JBrowse link
G Prkd1 protein kinase D1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:25240283 NCBI chr 6:73,460,640...73,774,433
Ensembl chr 6:67,725,905...68,039,042
JBrowse link
G Pygb glycogen phosphorylase B ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 3:160,072,141...160,118,930
Ensembl chr 3:139,611,749...139,663,553
JBrowse link
G Rbfox2 RNA binding fox-1 homolog 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 7:110,691,230...110,934,901
Ensembl chr 7:108,810,628...109,054,691
JBrowse link
G Serpinf1 serpin family F member 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr10:60,748,504...60,760,898
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Slc24a3 solute carrier family 24 member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 3:153,005,418...153,504,497
Ensembl chr 3:132,551,595...133,051,192
JBrowse link
G Son SON DNA and RNA binding protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr11:44,336,818...44,409,127
Ensembl chr11:30,892,005...30,923,167
JBrowse link
G Sox11 SRY-box transcription factor 11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Sox4 SRY-box transcription factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr17:35,876,298...35,881,004
Ensembl chr17:35,667,537...35,673,665
JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 8:41,673,510...41,723,158
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G Top2a DNA topoisomerase II alpha ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr10:84,441,954...84,473,093
Ensembl chr10:83,945,735...83,976,874
JBrowse link
G Vcan versican ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 2:22,497,035...22,595,955
Ensembl chr 2:20,761,718...20,860,637
JBrowse link
G Wnt5b Wnt family member 5B ISO CTD Direct Evidence: marker/mechanism CTD PMID:16762588 NCBI chr 4:154,281,852...154,406,081
Ensembl chr 4:152,609,569...152,733,407
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 severity ISO protein:decreased expression:saliva-secreting gland (human) RGD PMID:33202356 RGD:150530645 NCBI chr 1:89,268,721...89,296,619
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
pleomorphic adenoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plag1 PLAG1 zinc finger ISO CTD Direct Evidence: marker/mechanism CTD
OMIM
RGD
PMID:10029085 RGD:1599086 NCBI chr 5:16,902,057...16,956,727
Ensembl chr 5:16,905,394...16,913,647
JBrowse link
salivary gland adenoid cystic carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir155 microRNA 155 disease_progression ISO RGD PMID:28668836 RGD:24922215 NCBI chr11:37,261,114...37,261,178
Ensembl chr11:23,774,654...23,774,718
JBrowse link
G Mtus1 microtubule associated scaffold protein 1 disease_progression ISO RGD PMID:25885343 RGD:25330345 NCBI chr16:57,905,991...58,051,466
Ensembl chr16:51,253,562...51,347,793
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 susceptibility ISO DNA:SNP:intron: (rs13180356) (human) RGD PMID:26035306 RGD:151361290 NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
salivary gland cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gon4l gon-4 like ISS MouseDO NCBI chr 2:176,531,274...176,604,446
Ensembl chr 2:174,233,461...174,306,634
JBrowse link
salivary gland carcinoma term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdr kinase insert domain receptor disease_progression ISO RGD PMID:26498950 RGD:126907998 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 disease_progression ISO RGD PMID:26498950 RGD:126907998 NCBI chr 3:39,981,419...40,002,993
Ensembl chr 3:19,584,015...19,605,586
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein sexual_dimorphism ISO DNA:SNP:intron: (rs3748522) (human) RGD PMID:26035306 RGD:151361290 NCBI chr 4:154,778,320...154,802,002
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 sexual_dimorphism ISO DNA:SNP:intron: (rs13180356) (human) RGD PMID:26035306 RGD:151361290 NCBI chr 2:22,686,506...22,932,929
Ensembl chr 2:20,951,200...21,197,808
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19142
    sensory system disease 7373
      mouth disease 1047
        salivary gland disease 140
          Salivary Gland Neoplasms 58
            Neuroendocrine Carcinoma of Salivary Glands, Sensorineural Hearing Loss, and Enamel Hypoplasia 0
            Parotid Neoplasms + 0
            Sublingual Gland Neoplasms 0
            Submandibular Gland Neoplasms + 0
            benign lymphoepithelial lesion of salivary gland 0
            pleomorphic adenoma 1
            salivary gland cancer + 7
Path 2
Term Annotations click to browse term
  disease 19142
    disease of anatomical entity 18455
      nervous system disease 14362
        Neurologic Manifestations 10451
          sensory system disease 7373
            mouth disease 1047
              salivary gland disease 140
                Salivary Gland Neoplasms 58
                  Neuroendocrine Carcinoma of Salivary Glands, Sensorineural Hearing Loss, and Enamel Hypoplasia 0
                  Parotid Neoplasms + 0
                  Sublingual Gland Neoplasms 0
                  Submandibular Gland Neoplasms + 0
                  benign lymphoepithelial lesion of salivary gland 0
                  pleomorphic adenoma 1
                  salivary gland cancer + 7
paths to the root