RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Oral Lichen Planus
Accession: DOID:9003036
browse the term
Definition: Oral lesions accompanying cutaneous lichen planus or often occurring alone. The buccal mucosa, lips, gingivae, floor of the mouth, and palate are usually affected (in a descending order of frequency). Typically, oral lesions consist of radiating white or gray, velvety, threadlike lines, arranged in a reticular pattern, at the intersection of which there may be minute, white, elevated dots or streaks (Wickham's striae). (Jablonski, Illustrated Dictionary of Dentistry)
Synonyms: primary_id: MESH:D017676
xref: EFO:0008517
G
Bmp4
bone morphogenetic protein 4
ISO
protein:increased expression:mouth mucosa:
RGD
PMID:16393252
RGD:9068457
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
G
Ccl20
C-C motif chemokine ligand 20
ISO
RGD
PMID:16454813
RGD:7483584
NCBI chr 9:84,389,031...84,391,629
Ensembl chr 9:84,388,904...84,391,629
G
Ccr5
C-C motif chemokine receptor 5
ISO
protein:increased expression:blood, T cell
RGD
PMID:23490419
RGD:8551821
NCBI chr 8:123,752,423...123,757,538
Ensembl chr 8:123,752,325...123,759,260
G
Ccr6
C-C motif chemokine receptor 6
ISO
RGD
PMID:16454813
RGD:7483584
NCBI chr 1:52,474,477...52,508,301
Ensembl chr 1:52,474,168...52,498,603
G
Cdkn1a
cyclin-dependent kinase inhibitor 1A
ISO
protein:increased expression:mucosa:
RGD
PMID:12076323
RGD:8662419
NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585
G
Dnmt1
DNA methyltransferase 1
ISO
protein:increased expression:mouth mucosa:
RGD
PMID:22236544
RGD:9589075
NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
G
Dnmt3b
DNA methyltransferase 3 beta
susceptibility
ISO
protein:increased expression:mouth mucosa: DNA:polymorphism: :C46359T(human)
RGD
PMID:22236544 PMID:22236544
RGD:9589075 , RGD:9589075
NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124
G
Il18
interleukin 18
no_association
ISO
DNA:SNPs, haplotypes:promoter:-137G>C (rs187238), -607C>A (rs1946518) (human) DNA:SNPs:promoter, intron:-656G>T (rs1946519), 1248A>G (rs189667) (human)
RGD
PMID:17854431 PMID:17854431
RGD:8655868 , RGD:8655868
NCBI chr 8:50,904,630...50,932,887
Ensembl chr 8:50,906,960...50,932,887
G
Il1a
interleukin 1 alpha
treatment
ISO
RGD
PMID:16476030
RGD:7794728
NCBI chr 3:116,526,601...116,537,055
Ensembl chr 3:116,526,604...116,536,822
G
Il2
interleukin 2
ISO
RGD
PMID:1666936
RGD:8693327
NCBI chr 2:120,004,862...120,009,566
Ensembl chr 2:120,004,862...120,009,566
G
Mir155
microRNA 155
ISO
miRNA:increased expression:blood
RGD
PMID:29813046 PMID:29276184
RGD:21081545 , RGD:24922205
NCBI chr11:23,774,654...23,774,718
Ensembl chr11:23,774,654...23,774,718
G
Mir19a
microRNA 19a
ISO
RGD
PMID:29813046
RGD:21081545
NCBI chr15:92,180,912...92,180,993
Ensembl chr15:92,180,912...92,180,993
G
Mmp2
matrix metallopeptidase 2
ISO
RGD
PMID:22554030
RGD:8656000
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
G
Tlr2
toll-like receptor 2
ISO
protein:increased expression:monocyte,buccal mucosa:
RGD
PMID:21544941
RGD:8553047
NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630
G
Tlr4
toll-like receptor 4
ISO
protein:increased expression:oral epithelium:
RGD
PMID:22672741
RGD:7777153
NCBI chr 5:80,145,867...80,159,501
Ensembl chr 5:80,145,826...80,159,628
G
Tlr9
toll-like receptor 9
ISO
protein:increased expression:oral epithelium:
RGD
PMID:22672741
RGD:7777153
NCBI chr 8:106,864,680...106,868,796
Ensembl chr 8:106,864,680...106,868,796
G
Tp53
tumor protein p53
ISO
DNA:mutations: : protein:increased expression:epithelium
RGD
PMID:12120703 PMID:16393253
RGD:8547838 , RGD:8547841
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all