RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Kidney Calculi
Accession: DOID:9002315
browse the term
Definition: Stones in the KIDNEY, usually formed in the urine-collecting area of the kidney (KIDNEY PELVIS). Their sizes vary and most contains CALCIUM OXALATE.
Synonyms: exact_synonym: Kidney Stone; Kidney Stones; Nephrolith; Renal Calculi; kidney calculus; renal calculus
primary_id: MESH:D007669
alt_id: RDO:0003105
For additional species annotation, visit the
Alliance of Genome Resources .
G
Bglap
bone gamma-carboxyglutamate protein
ISO
RGD
PMID:12674322
RGD:7207412
NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
G
Car2
carbonic anhydrase 2
IEP
RGD
PMID:10977795
RGD:1600710
NCBI chr 2:88,097,740...88,112,868
Ensembl chr 2:88,097,720...88,113,029
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Cat
catalase
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24360074
NCBI chr 3:93,379,872...93,412,058
Ensembl chr 3:93,379,874...93,412,058
G
Cd44
CD44 molecule (Indian blood group)
IEP
RGD
PMID:16850024
RGD:2289370
NCBI chr 3:92,695,083...92,783,820
Ensembl chr 3:92,696,313...92,783,658
G
Cldn14
claudin 14
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:19561606
NCBI chr11:34,132,581...34,142,813
Ensembl chr11:34,132,581...34,142,753
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F2
coagulation factor II
susceptibility
ISO
DNA:haplotypes: :
RGD
PMID:21067798
RGD:6893526
NCBI chr 3:80,529,468...80,542,993
Ensembl chr 3:80,529,428...80,543,031
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Gstp1
glutathione S-transferase pi 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24360074
NCBI chr 1:219,291,679...219,294,147
Ensembl chr 1:219,291,679...219,294,147
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Ifng
interferon gamma
ISO
associated with type 2 diabetes mellitus; mRNA:increased expression:kidney
RGD
PMID:21514417
RGD:6893463
NCBI chr 7:61,337,383...61,341,419
Ensembl chr 7:61,337,381...61,341,419
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Mgp
matrix Gla protein
IDA
RGD
PMID:10460895
RGD:1582511
NCBI chr 4:170,856,783...170,860,105
Ensembl chr 4:170,856,751...170,860,225
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Mpo
myeloperoxidase
ISO
protein:increased activity:blood
RGD
PMID:18022927
RGD:7174700
NCBI chr10:75,087,892...75,098,260
Ensembl chr10:75,087,892...75,098,260
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Pomc
proopiomelanocortin
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:1324751
NCBI chr 6:28,382,937...28,388,771
Ensembl chr 6:28,382,962...28,388,967
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Sod1
superoxide dismutase 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24360074
NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862
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Spp1
secreted phosphoprotein 1
ISO IEP
CTD Direct Evidence: marker/mechanism
CTD
PMID:8325891 PMID:10890885 , PMID:15954903 , PMID:21378157 , PMID:16105024
RGD:1581372 , RGD:6903839 , RGD:1581334
NCBI chr14:6,673,686...6,679,965
Ensembl chr14:6,673,686...6,679,901
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Trpm7
transient receptor potential cation channel, subfamily M, member 7
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:24291744
NCBI chr 3:119,258,189...119,347,084
Ensembl chr 3:119,259,467...119,330,345
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