RGD DISEASE ONTOLOGY - ANNOTATIONS
RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term: Spinal Cord Injuries
Accession: DOID:9000039
browse the term
Definition: Penetrating and non-penetrating injuries to the spinal cord resulting from traumatic external forces (e.g., WOUNDS, GUNSHOT; WHIPLASH INJURIES; etc.).
Synonyms: exact_synonym: Post Traumatic Myelopathy; Post-Traumatic Myelopathies; Spinal Cord Contusion; Spinal Cord Contusions; Spinal Cord Injury; Spinal Cord Laceration; Spinal Cord Lacerations; Spinal Cord Transection; Spinal Cord Transections; Spinal Cord Trauma; Spinal Cord Traumas; Traumatic Myelopathies; Traumatic Myelopathy
narrow_synonym: acute spinal cord injury
primary_id: MESH:D013119 ; RDO:0006597
xref: EFO:1001919
GViewer not supported for the selected species.
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Abcc8
ATP binding cassette subfamily C member 8
treatment
ISO
mRNA:increased expression:spinal cord
RGD
PMID:20410530 PMID:25763638
RGD:12790978 RGD:12791993
NCBI chrNW_004955414:32,216,243...32,289,028
Ensembl chrNW_004955414:32,216,196...32,289,053
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Acan
aggrecan
ISO
protein:altered expression:spinal cord (rat)
RGD
PMID:14769391
RGD:2315837
NCBI chrNW_004955416:16,125,536...16,186,046
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Adarb1
adenosine deaminase RNA specific B1
ISO
RGD
PMID:20456005
RGD:10755338
NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897
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Adcyap1
adenylate cyclase activating polypeptide 1
ISO
protein:altered expression:spinal cord,dorsal root ganglion, urinary bladder
RGD
PMID:15698618 PMID:15913892
RGD:2325306 RGD:2325309
NCBI chrNW_004955402:9,091,927...9,099,803
Ensembl chrNW_004955402:9,091,725...9,099,803
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Adipoq
adiponectin, C1Q and collagen domain containing
ISO
protein:increased expression:serum
RGD
PMID:16213239
RGD:5686719
NCBI chrNW_004955420:20,911,181...20,922,992
Ensembl chrNW_004955420:20,912,348...20,914,402
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Adora1
adenosine A1 receptor
ISO
protein:decreased expression:spinal cord
RGD
PMID:17853654 PMID:18289533 PMID:20065990
RGD:4890369 RGD:5129094 RGD:5129096
NCBI chrNW_004955406:39,148,811...39,183,577
Ensembl chrNW_004955406:39,149,689...39,187,688
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Adora2a
adenosine A2a receptor
ISO
RGD
PMID:17559837
RGD:4890378
NCBI chrNW_004955455:7,886,720...7,906,214
Ensembl chrNW_004955455:7,895,974...7,906,505
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Adra1a
adrenoceptor alpha 1A
ISO
mRNA:increased expression:aorta
RGD
PMID:16524515
RGD:5688371
NCBI chrNW_004955403:49,394,173...49,485,881
Ensembl chrNW_004955403:49,399,127...49,485,934
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Ager
advanced glycosylation end-product specific receptor
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:20195207
RGD:2325645
NCBI chrNW_004955437:645,482...648,607
Ensembl chrNW_004955437:645,897...648,479
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Aif1
allograft inflammatory factor 1
ISO
protein:altered expression:spinal cord dorsal horn (rat)
RGD
PMID:17158026
RGD:2313037
NCBI chrNW_004955437:157,509...158,919
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Akt1
AKT serine/threonine kinase 1
ISO
RGD
PMID:20678995
RGD:10040962
NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904
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Akt1s1
AKT1 substrate 1
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:17457363
NCBI chrNW_004955559:1,055,998...1,063,192
Ensembl chrNW_004955559:1,056,357...1,063,192
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Ambra1
autophagy and beclin 1 regulator 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452
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Ankrd1
ankyrin repeat domain 1
ISO
mRNA:increased expression:spinal cord, dorsal root ganglion, neuron
RGD
PMID:17610582
RGD:5133279
NCBI chrNW_004955425:2,258,554...2,267,699
Ensembl chrNW_004955425:2,258,392...2,267,878
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Anp32b
acidic nuclear phosphoprotein 32 family member B
ISO
RGD
PMID:25034417
RGD:10401137
NCBI chrNW_004955419:27,471,539...27,553,078
Ensembl chrNW_004955419:27,471,930...27,488,065
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Anxa1
annexin A1
treatment
ISO
mRNA,protein:increased expression:neuron,glial cell
RGD
PMID:15248295 PMID:17917587
RGD:10053688 RGD:2306891
NCBI chrNW_004955512:5,686,508...5,703,645
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Anxa2
annexin A2
ISO
mRNA,protein:increased expression:neuron,glial cell
RGD
PMID:15248295
RGD:10053688
NCBI chrNW_004955450:14,545,586...14,574,161
Ensembl chrNW_004955450:14,512,381...14,574,696
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Anxa5
annexin A5
ISO
mRNA,protein:increased expression:neuron,glial cell
RGD
PMID:15248295
RGD:10053688
NCBI chrNW_004955428:18,873,782...18,907,955
Ensembl chrNW_004955428:18,873,782...18,907,955
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Apaf1
apoptotic peptidase activating factor 1
ISO
RGD
PMID:21748659
RGD:10053608
NCBI chrNW_004955405:34,619,780...34,693,616
Ensembl chrNW_004955405:34,623,267...34,693,677
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Apex1
apurinic/apyrimidinic endodeoxyribonuclease 1
ISO
mRNA:increased expression:spinal cord
RGD
PMID:18637713
RGD:2315670
NCBI chrNW_004955550:1,273,170...1,275,843
Ensembl chrNW_004955550:1,273,284...1,279,743
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Apoe
apolipoprotein E
ISO
DNA:polymorphism:exon:
RGD
PMID:18581664 PMID:30036659
RGD:13703128 RGD:7771551
NCBI chrNW_004955555:1,998,170...2,002,003
Ensembl chrNW_004955555:1,999,711...2,001,888
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Aqp1
aquaporin 1 (Colton blood group)
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:spinal cord, neuron, astrocyte
RGD CTD
PMID:18248364 PMID:21092735
RGD:2307072 RGD:5148013
NCBI chrNW_004955410:32,066,196...32,078,661
Ensembl chrNW_004955410:32,066,196...32,078,717
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Aqp4
aquaporin 4
ISO
CTD Direct Evidence: marker/mechanism
RGD CTD
PMID:20517941 PMID:21092735 PMID:21280976
RGD:5148013 RGD:5148027 RGD:5148035
NCBI chrNW_004955772:1,160...10,709
Ensembl chrNW_004955772:1,159...10,709
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Atf4
activating transcription factor 4
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chrNW_004955413:25,406,589...25,408,727
Ensembl chrNW_004955413:25,406,589...25,412,218
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Atg5
autophagy related 5
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:axon
CTD RGD
PMID:25040536 PMID:29793971
RGD:11553820
NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827
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Atg7
autophagy related 7
ISO
protein:increased expression:axon
RGD
PMID:25040536
RGD:11553820
NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236
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Atm
ATM serine/threonine kinase
ISO
protein:increased expression:spinal cord
RGD
PMID:21748659
RGD:10053608
NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
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Atp2a1
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1
ISO
protein:decreased expression:tail, skeletal muscle
RGD
PMID:21930674
RGD:13782071
NCBI chrNW_004955493:6,559,995...6,578,461
Ensembl chrNW_004955493:6,559,995...6,578,461
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Atp2a2
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2
ISO
protein:decreased expression:tail, skeletal muscle
RGD
PMID:21930674
RGD:13782071
NCBI chrNW_004955482:7,233,336...7,295,754
Ensembl chrNW_004955482:7,233,336...7,295,754
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Bambi
BMP and activin membrane bound inhibitor
ISO
mRNA,protein:decreased expression:spinal cord:
RGD
PMID:28035406
RGD:14390163
NCBI chrNW_004955429:21,024,396...21,025,890
Ensembl chrNW_004955429:21,024,374...21,025,890
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Bax
BCL2 associated X, apoptosis regulator
treatment
ISO
RGD
PMID:27256506
RGD:13792677
NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
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Bcan
brevican
treatment
ISO
RGD
PMID:15016081
RGD:9589823
NCBI chrNW_004955545:2,723,780...2,739,334
Ensembl chrNW_004955545:2,723,780...2,739,450
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Bcl2
BCL2 apoptosis regulator
treatment
ISO
RGD
PMID:27256506
RGD:13792677
NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
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Bdnf
brain derived neurotrophic factor
treatment
ISO
RGD
PMID:16022868 PMID:19203225 PMID:24551172
RGD:10059354 RGD:4891066 RGD:4891112
NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
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Becn1
beclin 1
treatment
ISO
protein:increased expression:spinal cord CTD Direct Evidence: marker/mechanism
RGD CTD
PMID:21806471 PMID:23852559 PMID:24559459 PMID:29793971
RGD:11561918 RGD:11561922 RGD:6483100
NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730
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Bmp2
bone morphogenetic protein 2
ISO
RGD
PMID:23770801
RGD:9068404
NCBI chrNW_004955415:17,048,374...17,058,172
Ensembl chrNW_004955415:17,048,030...17,060,181
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Bmp4
bone morphogenetic protein 4
treatment
ISO
RGD
PMID:18803859 PMID:23770801
RGD:9068404 RGD:9068437
NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
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Bnip3
BCL2 interacting protein 3
ISO
protein:increased expression:spinal cord
RGD
PMID:23637053
RGD:11564330
NCBI chrNW_004955477:9,621,812...9,630,406
Ensembl chrNW_004955477:9,621,812...9,638,099
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Bnip3l
BCL2 interacting protein 3 like
ISO
protein:increased expression:spinal cord
RGD
PMID:23637053
RGD:11564330
NCBI chrNW_004955403:49,122,408...49,144,162
Ensembl chrNW_004955403:49,122,408...49,144,998
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Brca2
BRCA2 DNA repair associated
ISO
mRNA,protein:increased expression:spinal cord:
RGD
PMID:21748659
RGD:10053608
NCBI chrNW_004955431:13,449,287...13,526,878
Ensembl chrNW_004955431:13,449,543...13,527,432
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C1qb
complement C1q B chain
ISO
mRNA:increased expression
RGD
PMID:16345062
RGD:1599510
NCBI chrNW_004955452:2,765,844...2,771,695
Ensembl chrNW_004955452:2,769,752...2,772,534
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Capn1
calpain 1
treatment
ISO
RGD
PMID:23102374
RGD:13792496
NCBI chrNW_004955422:20,006,448...20,026,984
Ensembl chrNW_004955422:20,004,426...20,025,708
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Capzb
capping actin protein of muscle Z-line subunit beta
ISO
protein:decreased expression:spinal cord
RGD
PMID:20141154
RGD:9685028
NCBI chrNW_004955452:34,454...168,514
Ensembl chrNW_004955452:30,589...169,693
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Casp3
caspase 3
treatment
ISO
CTD Direct Evidence: marker/mechanism
RGD CTD
PMID:14588118 PMID:18378144 PMID:21748659 PMID:27256506 PMID:27339639
RGD:10053608 RGD:13782345 RGD:13792677 RGD:2293322
NCBI chrNW_004955403:24,315,712...24,326,271
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Casp9
caspase 9
treatment
ISO
RGD
PMID:21748659 PMID:27339639
RGD:10053608 RGD:13782345
NCBI chrNW_004955527:2,613,691...2,630,217
Ensembl chrNW_004955527:2,613,683...2,629,738
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Cav1
caveolin 1
ISO
protein:increased phosphorylation:spinal cord
RGD
PMID:17275798
RGD:2289124
NCBI chrNW_004955432:22,258,262...22,292,403
Ensembl chrNW_004955432:22,258,250...22,292,403
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Ccl5
C-C motif chemokine ligand 5
ISO
mRNA:increased expression:spinal cord segment (mouse)
RGD
PMID:20478301
RGD:4889905
NCBI chrNW_004955481:10,293,758...10,301,118
Ensembl chrNW_004955481:10,293,399...10,301,143
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Ccnd3
cyclin D3
ISO
protein:increased expression:spinal cord
RGD
PMID:18008145
RGD:2316019
NCBI chrNW_004955437:8,266,523...8,273,855
Ensembl chrNW_004955437:8,268,118...8,273,855
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Ccne1
cyclin E1
ISO
protein:increased expression:spinal cord
RGD
PMID:16759516
RGD:2289281
NCBI chrNW_004955468:7,803,610...7,814,872
Ensembl chrNW_004955468:7,803,346...7,814,872
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Ccnh
cyclin H
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:21710280
RGD:9590263
NCBI chrNW_004955418:23,790,398...23,807,509
Ensembl chrNW_004955418:23,790,001...23,807,702
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Ccr2
C-C motif chemokine receptor 2
ISO
protein:increased expression:spinal cord
RGD
PMID:18338959
RGD:4144888
NCBI chrNW_004955420:25,641,184...25,664,413
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Cd274
CD274 molecule
ISO
mRNA:increased expression:microglial cell
RGD
PMID:29665726
RGD:40886268
NCBI chrNW_004955434:9,487,309...9,508,366
Ensembl chrNW_004955434:9,487,315...9,505,904
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Cdc42
cell division cycle 42
ISO
mRNA:increased expression:spinal cord
RGD
PMID:15736231
RGD:5688276
NCBI chrNW_004955452:2,255,940...2,299,042
Ensembl chrNW_004955452:2,255,117...2,299,042
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Cdk1
cyclin dependent kinase 1
ISO
protein:increased expression:spinal cord dura mater (rat)
RGD
PMID:19672039
RGD:2316488
NCBI chrNW_004955425:14,210,681...14,226,474
Ensembl chrNW_004955425:14,210,680...14,226,474
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Cdk19
cyclin dependent kinase 19
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:18008145
RGD:2316019
NCBI chrNW_004955411:35,312,722...35,411,951
Ensembl chrNW_004955411:35,312,722...35,412,246
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Cdkn1b
cyclin dependent kinase inhibitor 1B
ISO
protein:decreased expression, altered localization:spinal cord, neuron, microglial cell
RGD
PMID:18319192
RGD:2293615
NCBI chrNW_004955413:9,615,542...9,620,542
Ensembl chrNW_004955413:9,615,542...9,620,542
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Chl1
cell adhesion molecule L1 like
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:21337374
RGD:6483045
NCBI chrNW_004955421:12,763,432...12,957,852
Ensembl chrNW_004955421:12,763,287...12,958,065
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Cnr1
cannabinoid receptor 1
ISO
RGD
PMID:18930143
RGD:2316199
NCBI chrNW_004955411:15,052,151...15,077,320
Ensembl chrNW_004955411:15,052,163...15,077,320
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Cnr2
cannabinoid receptor 2
ISO
RGD
PMID:18930143
RGD:2316199
NCBI chrNW_004955452:3,763,742...3,795,069
Ensembl chrNW_004955452:3,763,742...3,795,069
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Cr2
complement C3d receptor 2
ISO
protein:increased expression:cerebrospinal fluid
RGD
PMID:26502875
RGD:11343913
NCBI chrNW_004955406:42,877,041...42,910,970
Ensembl chrNW_004955406:42,876,966...42,911,564
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Crh
corticotropin releasing hormone
ISO
protein:altered expression:spinal cord (rat)
RGD
PMID:20458328
RGD:5490964
NCBI chrNW_004955444:12,989,210...12,991,300
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Csf2
colony stimulating factor 2
treatment
ISO
RGD
PMID:15658127
RGD:10449531
NCBI chrNW_004955408:3,452,009...3,454,255
Ensembl chrNW_004955408:3,451,965...3,454,312
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Csf3
colony stimulating factor 3
treatment
ISO
RGD
PMID:21953623
RGD:10450511
NCBI chrNW_004955451:14,688,181...14,690,126
Ensembl chrNW_004955451:14,688,181...14,690,126
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Cspg4
chondroitin sulfate proteoglycan 4
ISO
RGD
PMID:19604403 PMID:22042562 PMID:22243800
RGD:5686844 RGD:5686848 RGD:5686859
NCBI chrNW_004955450:2,631,310...2,663,118
Ensembl chrNW_004955450:2,631,327...2,662,269
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Ctss
cathepsin S
ISO
RGD
PMID:16344894
RGD:2303423
NCBI chrNW_004955413:99,279...124,793
Ensembl chrNW_004955413:99,159...124,042
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Cxcl10
C-X-C motif chemokine ligand 10
ISO
RGD
PMID:19170890
RGD:2311365
NCBI chrNW_004955433:748,392...750,890
Ensembl chrNW_004955433:748,284...750,927
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Dab2
DAB adaptor protein 2
ISO
protein:increased expression:spinal cord
RGD
PMID:17317100
RGD:7243246
NCBI chrNW_004955426:23,852,752...23,883,030
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Dcc
DCC netrin 1 receptor
ISO
RGD
PMID:16998900
RGD:2314373
NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
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Ddit3
DNA damage inducible transcript 3
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chrNW_004955458:5,232,979...5,238,513
Ensembl chrNW_004955458:5,232,979...5,238,513
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Dusp1
dual specificity phosphatase 1
treatment
ISO
protein:decreased expression:spinal cord
RGD
PMID:18630599 PMID:19383246
RGD:7771572 RGD:7771580
NCBI chrNW_004955408:25,481,294...25,484,381
Ensembl chrNW_004955408:25,481,294...25,484,381
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Efnb2
ephrin B2
ISO
mRNA,protein:increased expression:fibroblast, astrocyte protein:increased phosporylation:spinal cord
RGD
PMID:12944508 PMID:33794069
RGD:127285659 RGD:127285804
NCBI chrNW_004955404:5,000,906...5,030,068
Ensembl chrNW_004955404:5,000,906...5,030,126
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Egfr
epidermal growth factor receptor
ISO
protein:increased phosphorylation:spinal cord, astrocyte (rat)
RGD
PMID:20869112 PMID:21402118
RGD:5131454 RGD:5131525
NCBI chrNW_004955456:321,222...456,431
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Eif5a
eukaryotic translation initiation factor 5A
ISO
mRNA, protein:increased expression:gastrocnemius
RGD
PMID:23238062
RGD:10395360
NCBI chrNW_004955467:9,603,800...9,608,490
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Endog
endonuclease G
ISO
RGD
PMID:16689664
RGD:8655990
NCBI chrNW_004955570:1,200,461...1,203,566
Ensembl chrNW_004955570:1,200,996...1,203,566
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Eno2
enolase 2
ISO
protein:increased expression:serum, cerebrospinal fluid
RGD
PMID:18343116
RGD:2293743
NCBI chrNW_004955413:4,498,625...4,506,769
Ensembl chrNW_004955413:4,498,625...4,506,769
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Ensa
endosulfine alpha
ISO
mRNA:decreased expression:spinal cord
RGD
PMID:16344894
RGD:2303423
NCBI chrNW_004955413:197,239...204,867
Ensembl chrNW_004955413:197,242...204,867
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Epha3
EPH receptor A3
ISO
RGD
PMID:16083359
RGD:2301766
NCBI chrNW_004955407:4,135,671...4,500,900
Ensembl chrNW_004955407:4,138,362...4,500,688
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Epha4
EPH receptor A4
ISO
RGD
PMID:17418490 PMID:17970742 PMID:21931787
RGD:5688750 RGD:5688764 RGD:5688782
NCBI chrNW_004955453:12,099,800...12,240,199
Ensembl chrNW_004955453:12,099,757...12,240,199
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Epha7
EPH receptor A7
ISO
mRNA:increased expression:spinal cord
RGD
PMID:16983667
RGD:2301957
NCBI chrNW_004955411:19,652,146...19,815,418
Ensembl chrNW_004955411:19,650,515...19,815,512
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Ephb2
EPH receptor B2
ameliorates
ISO
RGD
PMID:12944508 PMID:33794069
RGD:127285659 RGD:127285804
NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
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Epo
erythropoietin
treatment
ISO
RGD
PMID:22196867
RGD:10401074
NCBI chrNW_004955573:203,875...206,078
Ensembl chrNW_004955573:203,441...206,355
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Erbb3
erb-b2 receptor tyrosine kinase 3
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:11797086
RGD:2289967
NCBI chrNW_004955458:3,683,126...3,701,752
Ensembl chrNW_004955458:3,683,126...3,702,978
G
Esr1
estrogen receptor 1
ISO
RGD
PMID:25105782
RGD:10045844
NCBI chrNW_004955439:9,588,631...9,953,606
Ensembl chrNW_004955439:9,588,201...9,963,353
G
Esr2
estrogen receptor 2
ISO
RGD
PMID:25105782
RGD:10045844
NCBI chrNW_004955466:5,587,003...5,644,765
Ensembl chrNW_004955466:5,575,088...5,638,946
G
F2
coagulation factor II, thrombin
ISO
RGD
PMID:16344894
RGD:2303423
NCBI chrNW_004955422:1,356,675...1,367,788
Ensembl chrNW_004955422:1,356,769...1,367,517
G
Fadd
Fas associated via death domain
treatment
ISO
RGD
PMID:23574812
RGD:11344882
NCBI chrNW_004955422:16,026,323...16,035,808
Ensembl chrNW_004955422:16,031,280...16,036,281
G
Fas
Fas cell surface death receptor
ISO
protein:increased expression:cervical spinal cord
RGD
PMID:17518537 PMID:17703359 PMID:29738767
RGD:13792580 RGD:2290176 RGD:2290177
NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455
G
Fgf1
fibroblast growth factor 1
ISO
Human FGF1 used in rat model of spinal cord injury
RGD
PMID:8662542 PMID:18482974 PMID:20488178 PMID:21663406
RGD:2317692 RGD:5509875 RGD:5509876 RGD:5509877
NCBI chrNW_004955415:11,151,330...11,245,554
Ensembl chrNW_004955415:11,151,266...11,247,344
G
Fgf2
fibroblast growth factor 2
treatment
ISO
RGD
PMID:24968269
RGD:40924652
NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773
G
Fis1
fission, mitochondrial 1
treatment
ISO
RGD
PMID:26079325
RGD:12437066
NCBI chrNW_004955456:16,057,158...16,060,623
Ensembl chrNW_004955456:16,038,221...16,060,623
G
Fkbp1b
FKBP prolyl isomerase 1B
ISO
RGD
PMID:27998200
RGD:329853757
NCBI chrNW_004955469:6,263,271...6,274,823
Ensembl chrNW_004955469:6,263,271...6,277,767
G
Flt1
fms related receptor tyrosine kinase 1
ISO
mRNA:increased expression:spinal cord, astrocyte, macrophage
RGD
PMID:17409380
RGD:5684414
NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472
G
Fn1
fibronectin 1
ISO
RGD
PMID:20347014
RGD:7205459
NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975
G
Foxo3
forkhead box O3
ISO
protein:decreased expression:spinal cord,neuron, astrocyte:
RGD
PMID:22930444
RGD:10402202
NCBI chrNW_004955411:33,655,958...33,770,829
Ensembl chrNW_004955411:33,655,958...33,770,829
G
Foxp3
forkhead box P3
treatment
ISO
RGD
PMID:30287503
RGD:38549580
NCBI chrNW_004955543:731,707...742,606
Ensembl chrNW_004955543:731,707...742,606
G
Gap43
growth associated protein 43
treatment
ISO
RGD
PMID:24968269
RGD:40924652
NCBI chrNW_004955427:15,696,549...15,791,279
Ensembl chrNW_004955427:15,695,963...15,791,327
G
Gapdh
glyceraldehyde-3-phosphate dehydrogenase
treatment
ISO
RGD
PMID:27256506
RGD:13792677
NCBI chrNW_004955413:4,162,467...4,166,783
Ensembl chrNW_004955413:4,162,467...4,166,783
G
Gdnf
glial cell derived neurotrophic factor
ISO
RGD
PMID:22342994
RGD:5688774
NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324
G
Gfap
glial fibrillary acidic protein
treatment
ISO
protein:increased expression:spinal cord
RGD
PMID:10225952 PMID:21250919 PMID:24968269
RGD:40924652 RGD:6480471 RGD:6480511
NCBI chrNW_004955451:17,695,835...17,703,894
Ensembl chrNW_004955451:17,695,835...17,703,268
G
Ghsr
growth hormone secretagogue receptor
ISO
RGD
PMID:25261791
RGD:12907564
NCBI chrNW_004955420:2,483,173...2,486,414
Ensembl chrNW_004955420:2,478,877...2,487,215
G
Gja1
gap junction protein alpha 1
treatment
ISO
RGD
PMID:23403365 PMID:24183749
RGD:8662431 RGD:8662460
NCBI chrNW_004955436:3,612,533...3,618,095
Ensembl chrNW_004955436:3,612,533...3,618,095
G
Gjc2
gap junction protein gamma 2
treatment
ISO
RGD
PMID:26415641
RGD:13208513
NCBI chrNW_004955581:291,537...294,752
G
Got2
glutamic-oxaloacetic transaminase 2
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:27150525
RGD:13506243
NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113
G
Gper1
G protein-coupled estrogen receptor 1
ISO
RGD
PMID:22975889
RGD:8552988
NCBI chrNW_004955460:8,790,798...8,794,902
Ensembl chrNW_004955460:8,790,798...8,794,902
G
Gpx3
glutathione peroxidase 3
ISO
protein:increased expression:cerebrospinal fluid
RGD
PMID:21559420
RGD:40907059
NCBI chrNW_004955408:2,622,162...2,629,088
Ensembl chrNW_004955408:2,622,741...2,629,032
G
Grk6
G protein-coupled receptor kinase 6
ISO
protein:increased expression:spinal cord, neuron, microglial cell (rat)
RGD
PMID:23359120
RGD:13792782
NCBI chrNW_004955408:29,665,534...29,684,225
Ensembl chrNW_004955408:29,665,260...29,684,207
G
Grn
granulin precursor
ISO
mRNA, protein:increased expression:spinal cord:
RGD
PMID:19946692
RGD:5509603
NCBI chrNW_004955451:17,368,600...17,371,981
Ensembl chrNW_004955451:17,368,428...17,372,377
G
Hgf
hepatocyte growth factor
treatment
ISO
mRNA,protein:increased expression:spinal cord:
RGD
PMID:17549731 PMID:22140459
RGD:2317487 RGD:8548666
NCBI chrNW_004955410:4,114,280...4,181,953
Ensembl chrNW_004955410:4,114,778...4,182,058
G
Hif1a
hypoxia inducible factor 1 subunit alpha
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:spinal cord
CTD RGD
PMID:21092735
RGD:5148013
NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
G
Hmgb1
high mobility group box 1
ISO
mRNA:increased expression:spinal cord
RGD
PMID:20195207
RGD:2325645
NCBI chrNW_004955431:15,373,207...15,377,339
Ensembl chrNW_004955431:15,373,207...15,377,339
G
Hmox1
heme oxygenase 1
treatment
ISO
RGD
PMID:23943397
RGD:10766443
NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
G
Hrh3
histamine receptor H3
ISO
RGD
PMID:16671478
RGD:1626425
NCBI chrNW_004955528:1,819,247...1,826,707
Ensembl chrNW_004955528:1,819,247...1,826,707
G
Hsp90ab1
heat shock protein 90 alpha family class B member 1
ISO
protein:decreased expression:spinal cord (rat)
RGD
PMID:24499940
RGD:10445836
NCBI chrNW_004955437:9,872,649...9,878,459
Ensembl chrNW_004955437:9,873,908...9,878,459
G
Hspa5
heat shock protein family A (Hsp70) member 5
ISO
mRNA: increased expression
RGD
PMID:21933012
RGD:5685666
NCBI chrNW_004955419:3,055,420...3,060,208
Ensembl chrNW_004955419:3,055,420...3,062,131
G
Hspb1
heat shock protein family B (small) member 1
treatment
ISO
mRNA,protein:increased expression:spinal cord:
RGD
PMID:12098653 PMID:30287503
RGD:10402749 RGD:38549580
NCBI chrNW_004955844:8,094...9,565
Ensembl chrNW_004955844:7,790...10,004
G
Icam1
intercellular adhesion molecule 1
treatment
ISO
RGD
PMID:8627308
RGD:11522712
NCBI chrNW_004955495:1,561,464...1,573,282
Ensembl chrNW_004955495:1,561,714...1,574,755
G
Id1
inhibitor of DNA binding 1, HLH protein
ISO
mRNA:increased expression:spinal cord (rat)
RGD
PMID:11746449
RGD:9686138
NCBI chrNW_004955422:29,337,969...29,339,178
Ensembl chrNW_004955422:29,337,757...29,339,178
G
Id2
inhibitor of DNA binding 2
ISO
mRNA:increased expression:spinal cord (rat)
RGD
PMID:11746449
RGD:9686138
NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783
G
Id3
inhibitor of DNA binding 3, HLH protein
ISO
mRNA:increased expression:spinal cord (rat)
RGD
PMID:11746449
RGD:9686138
NCBI chrNW_004955452:3,537,352...3,538,921
Ensembl chrNW_004955452:3,537,021...3,560,954
G
Ifnb1
interferon beta 1
ameliorates
ISO
RGD
PMID:17426631 PMID:20109445
RGD:401854235 RGD:401854241
NCBI chrNW_004955434:23,301,623...23,302,304
G
Il10
interleukin 10
treatment
ISO
RGD
PMID:29691718
RGD:14975124
NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779
G
Il18
interleukin 18
treatment
ISO
RGD
PMID:18367607 PMID:23140983
RGD:2315889 RGD:8655974
NCBI chrNW_004955412:13,807,361...13,826,007
Ensembl chrNW_004955412:13,806,553...13,825,634
G
Il1b
interleukin 1 beta
treatment
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:16038625 PMID:23209732 PMID:29691718
RGD:14975124 RGD:1626673 RGD:7175523
NCBI chrNW_004955470:1,486,936...1,491,888
Ensembl chrNW_004955470:1,486,967...1,491,947
G
Il1r1
interleukin 1 receptor type 1
ISO
mRNA,protein:increased expression:spinal cord
RGD
PMID:16456668
RGD:7207035
NCBI chrNW_004955470:7,685,498...7,703,374
G
Il1rn
interleukin 1 receptor antagonist
ISO
protein:increased expression:serum (human)
RGD
PMID:16038625 PMID:17964877
RGD:1626673 RGD:6907102
NCBI chrNW_004955470:1,145,022...1,159,413
Ensembl chrNW_004955470:1,144,810...1,159,471
G
Il4
interleukin 4
ISO
RGD
PMID:20623539
RGD:5128562
NCBI chrNW_004955408:4,058,052...4,065,999
G
Il4r
interleukin 4 receptor
ISO
mRNA:increased expression:spinal cord
RGD
PMID:20623539
RGD:5128562
NCBI chrNW_004955493:5,546,340...5,580,745
Ensembl chrNW_004955493:5,545,944...5,582,422
G
Il6
interleukin 6
treatment
ISO
RGD
PMID:27085942 PMID:29691718
RGD:11062150 RGD:14975124
NCBI chrNW_004955410:25,079,835...25,084,390
G
Irf1
interferon regulatory factor 1
ISO
RGD
PMID:11723173
RGD:2298928
NCBI chrNW_004955408:3,882,282...3,887,965
Ensembl chrNW_004955408:3,880,155...3,887,973
G
Itih4
inter-alpha-trypsin inhibitor heavy chain 4
severity
ISO
protein:decreased expression:cerebrospinal fluid
RGD
PMID:21559420
RGD:40907059
NCBI chrNW_004955430:2,772,064...2,787,912
Ensembl chrNW_004955430:2,770,373...2,789,131
G
Jak2
Janus kinase 2
treatment
ISO
RGD
PMID:23274522
RGD:10411896
NCBI chrNW_004955434:9,227,897...9,341,208
Ensembl chrNW_004955434:9,227,595...9,341,208
G
Jun
Jun proto-oncogene, AP-1 transcription factor subunit
ISO
protein:increased phosphorylation:neuron
RGD
PMID:21132399
RGD:4889994
NCBI chrNW_004955464:1,107,598...1,110,326
G
Kcnj10
potassium inwardly rectifying channel subfamily J member 10
ISO
protein:decreased expression:spinal cord
RGD
PMID:20375134
RGD:8662905
NCBI chrNW_004955468:11,828,525...11,860,365
Ensembl chrNW_004955468:11,828,525...11,860,365
G
Kcnk2
potassium two pore domain channel subfamily K member 2
treatment
ISO
RGD
PMID:22425721
RGD:9831183
NCBI chrNW_004955406:2,793,493...2,975,322
Ensembl chrNW_004955406:2,791,803...2,975,322
G
Kcnn4
potassium calcium-activated channel subfamily N member 4
ISO
RGD
PMID:24606313
RGD:329955563
NCBI chrNW_004955555:1,493,600...1,509,113
Ensembl chrNW_004955555:1,490,052...1,509,113
G
Kdm6b
lysine demethylase 6B
ISO
mRNA:increased expression:spinal cord (rat)
RGD
PMID:22578249
RGD:9587821
NCBI chrNW_004955467:9,085,239...9,106,658
Ensembl chrNW_004955467:9,086,204...9,094,404
G
Kdr
kinase insert domain receptor
ISO
mRNA:increased expression:spinal cord, astrocyte, macrophage
RGD
PMID:17409380
RGD:5684414
NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583
G
Kif3b
kinesin family member 3B
ISO
protein:increased expression:spinal cord
RGD
PMID:23093447
RGD:11049594
NCBI chrNW_004955422:28,738,567...28,779,584
Ensembl chrNW_004955422:28,738,572...28,780,112
G
Klk6
kallikrein related peptidase 6
ISO
protein:increased expression:spinal cord
RGD
PMID:16987227
RGD:2314866
NCBI chrNW_004955558:1,501,806...1,509,461
Ensembl chrNW_004955558:1,502,881...1,509,558
G
Kmo
kynurenine 3-monooxygenase
ISO
mRNA,protein:increased expression:spinal cord:
RGD
PMID:26524415
RGD:13703043
NCBI chrNW_004955406:10,496,102...10,527,181
Ensembl chrNW_004955406:10,493,379...10,527,201
G
Lep
leptin
ISO
RGD
PMID:19777863
RGD:5128780
NCBI chrNW_004955479:9,266,604...9,276,568
Ensembl chrNW_004955479:9,274,516...9,279,472
G
LOC102004641
cytochrome b-245 light chain
ISO
mRNA:increased expression:spinal cord
RGD
PMID:16345062
RGD:1599510
NCBI chrNW_004955541:2,570,843...2,573,822
Ensembl chrNW_004955541:2,569,727...2,574,118
G
LOC102012042
cytochrome b-245 heavy chain
ISO
mRNA,protein:increased expression:microglia:
RGD
PMID:20679217
RGD:11040629
NCBI chrNW_004955587:781,533...818,149
Ensembl chrNW_004955587:781,388...819,912
G
Lrp1
LDL receptor related protein 1
treatment
ISO
RGD
PMID:23867460
RGD:13800520
NCBI chrNW_004955458:4,861,431...4,941,939
Ensembl chrNW_004955458:4,861,431...4,941,146
G
Lrp5
LDL receptor related protein 5
treatment
ISO
RGD
PMID:24090150
RGD:12798566
NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763
G
Lum
lumican
ISO
protein:increased expression:spinal cord
RGD
PMID:18482974
RGD:2317692
NCBI chrNW_004955405:28,299,966...28,307,982
Ensembl chrNW_004955405:28,298,988...28,308,054
G
Map1b
microtubule associated protein 1B
ISO
protein:increased phosphorylation:spinal cord, neuron
RGD
PMID:17880387
RGD:2304007
NCBI chrNW_004955575:914,607...1,020,971
Ensembl chrNW_004955575:913,723...1,021,028
G
Map1lc3a
microtubule associated protein 1 light chain 3 alpha
treatment
ISO
protein:increased expression:spinal cord
RGD
PMID:23637053 PMID:23852559 PMID:24559459
RGD:11561918 RGD:11561922 RGD:11564330
NCBI chrNW_004955422:26,774,466...26,776,024
Ensembl chrNW_004955422:26,774,922...26,775,884
G
Map1lc3b
microtubule associated protein 1 light chain 3 beta
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chrNW_004955541:1,852,388...1,868,194
G
Map2
microtubule associated protein 2
ISO
RGD
PMID:21704982
RGD:6483323
NCBI chrNW_004955457:5,678,826...5,816,114
Ensembl chrNW_004955457:5,678,436...5,875,024
G
Map3k5
mitogen-activated protein kinase kinase kinase 5
ISO
protein:increased expression:white matter and grey matter:
RGD
PMID:10331432
RGD:10412645
NCBI chrNW_004955439:162,499...376,919
Ensembl chrNW_004955439:163,103...377,808
G
Mapt
microtubule associated protein tau
treatment
ISO
RGD
PMID:22052241
RGD:8158113
NCBI chrNW_004955478:10,222,439...10,271,439
Ensembl chrNW_004955478:10,225,823...10,271,442
G
Mdm2
MDM2 proto-oncogene
ISO
protein:increased expression:spinal cord
RGD
PMID:23595775
RGD:10412063
NCBI chrNW_004955458:15,264,028...15,287,290
Ensembl chrNW_004955458:15,263,739...15,286,808
G
Met
MET proto-oncogene, receptor tyrosine kinase
ISO
mRNA, protein:increased expression:spinal cord (rat)
RGD
PMID:17549731
RGD:2317487
NCBI chrNW_004955432:22,440,671...22,519,592
Ensembl chrNW_004955432:22,440,637...22,517,647
G
Mfn1
mitofusin 1
treatment
ISO
protein:altered expression:spinal cord, mitochondrion (rat)
RGD
PMID:26079325 PMID:26981103
RGD:12437066 RGD:12910837
NCBI chrNW_004955420:8,541,547...8,596,494
Ensembl chrNW_004955420:8,541,936...8,594,437
G
Mfn2
mitofusin 2
treatment
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:26079325 PMID:28404953
RGD:12437066 RGD:12910735
NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772
G
Mif
macrophage migration inhibitory factor
ISO
mRNA:increased expression:spinal cord, microglial cell
RGD
PMID:15067555
RGD:1641997
NCBI chrNW_004955455:8,367,566...8,368,460
Ensembl chrNW_004955455:8,367,566...8,368,460
G
Mmp2
matrix metallopeptidase 2
treatment
ISO
RGD
PMID:24436993
RGD:8657106
NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
G
Mmp9
matrix metallopeptidase 9
treatment
ISO
RGD
PMID:25763638
RGD:12791993
NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
G
Mpo
myeloperoxidase
ISO
protein:increased activity:spinal cord
RGD
PMID:22986158
RGD:6909148
NCBI chrNW_004955451:4,743,744...4,753,358
Ensembl chrNW_004955451:4,743,744...4,753,358
G
Mrc1
mannose receptor C-type 1
treatment
ISO
RGD
PMID:24968269
RGD:40924652
NCBI chrNW_004955429:10,139,398...10,232,541
Ensembl chrNW_004955429:10,139,355...10,232,600
G
Mtor
mechanistic target of rapamycin kinase
treatment
ISO
RGD
PMID:20678995
RGD:10040962
NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
G
Myrf
myelin regulatory factor
ameliorates
ISO
RGD
PMID:27370227
RGD:213230157
NCBI chrNW_004955511:5,927,103...5,949,289
Ensembl chrNW_004955511:5,927,698...5,942,242
G
Napepld
N-acyl phosphatidylethanolamine phospholipase D
ISO
mRNA:increased expression:spinal cord
RGD
PMID:18930143
RGD:2316199
NCBI chrNW_004955410:8,217,684...8,233,302
Ensembl chrNW_004955410:8,220,400...8,247,486
G
Ncam1
neural cell adhesion molecule 1
treatment
ISO
RGD
PMID:28529158
RGD:40924632
NCBI chrNW_004955412:14,630,109...14,923,847
Ensembl chrNW_004955412:14,630,443...14,923,926
G
Ncf2
neutrophil cytosolic factor 2
ISO
protein:increased expression:spinal cord
RGD
PMID:14644473
RGD:2314450
NCBI chrNW_004955406:22,355,717...22,384,746
Ensembl chrNW_004955406:22,355,724...22,384,864
G
Nefh
neurofilament heavy chain
treatment
ISO
RGD
PMID:18772508 PMID:32168135
RGD:27226888 RGD:9698443
NCBI chrNW_004955455:3,735,330...3,744,714
Ensembl chrNW_004955455:3,735,410...3,744,107
G
Nefl
neurofilament light chain
treatment
ISO
RGD
PMID:18772508
RGD:9698443
NCBI chrNW_004955403:47,946,413...47,951,734
Ensembl chrNW_004955403:47,946,353...47,952,026
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Nefm
neurofilament medium chain
treatment
ISO
RGD
PMID:18772508
RGD:9698443
NCBI chrNW_004955403:47,920,408...47,926,922
G
Nfe2l2
NFE2 like bZIP transcription factor 2
treatment
ISO
RGD
PMID:24747453
RGD:10412730
NCBI chrNW_004955403:19,510,122...19,536,428
Ensembl chrNW_004955403:19,532,103...19,535,944
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Nfkbia
NFKB inhibitor alpha
treatment
ISO
RGD
PMID:21134362
RGD:10413867
NCBI chrNW_004955409:25,691,673...25,695,151
Ensembl chrNW_004955409:25,691,534...25,697,520
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Ngf
nerve growth factor
ISO
RGD
PMID:12499054 PMID:16915089
RGD:5144069 RGD:5144073
NCBI chrNW_004955435:18,581,889...18,633,330
Ensembl chrNW_004955435:18,581,808...18,601,059
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Ngfr
nerve growth factor receptor
treatment
ISO
mRNA:increased expression:spinal cord
RGD
PMID:11223160 PMID:23748892
RGD:10414079 RGD:5144100
NCBI chrNW_004955451:12,030,303...12,047,305
Ensembl chrNW_004955451:12,030,252...12,047,305
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Nkx6-1
NK6 homeobox 1
ISO
RGD
PMID:18687784
RGD:2311166
NCBI chrNW_004955474:5,211,281...5,214,785
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Nlk
nemo like kinase
ISO
protein:increased expression:grey matter:
RGD
PMID:24395089
RGD:12791278
NCBI chrNW_004955481:4,828,441...4,973,734
Ensembl chrNW_004955481:4,828,448...4,973,734
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Nog
noggin
treatment
ISO
RGD
PMID:18221366
RGD:10429192
NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
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Nos1
nitric oxide synthase 1
ISO
protein:increased expression:spinal cord
RGD
PMID:19291395 PMID:20633123
RGD:5131936 RGD:5132595
NCBI chrNW_004955455:13,797,557...13,978,402
Ensembl chrNW_004955455:13,797,545...13,972,566
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Nos2
nitric oxide synthase 2
ISO
mRNA:altered expression:thoracic aorta
RGD
PMID:17287083
RGD:4891407
NCBI chrNW_004955481:5,197,957...5,232,406
Ensembl chrNW_004955481:5,201,234...5,231,961
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Nos3
nitric oxide synthase 3
ISO
RGD
PMID:17287083
RGD:4891407
NCBI chrNW_004955491:5,438,228...5,457,308
Ensembl chrNW_004955491:5,438,010...5,460,814
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Nox4
NADPH oxidase 4
ISO
mRNA,protein:increased expression:gastrocnemius muscle
RGD
PMID:27998200
RGD:329853757
NCBI chrNW_004955414:4,062,337...4,220,032
Ensembl chrNW_004955414:4,062,081...4,212,746
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Nqo1
NAD(P)H quinone dehydrogenase 1
treatment
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:24747453 PMID:28881715
RGD:10412730 RGD:13434916
NCBI chrNW_004955484:7,012,373...7,028,182
Ensembl chrNW_004955484:7,012,506...7,027,604
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Nrg1
neuregulin 1
exacerbates
ISO
RGD
PMID:26993800
RGD:11056189
NCBI chrNW_004955463:8,009,436...9,037,116
Ensembl chrNW_004955463:8,009,530...9,037,116
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Ntf3
neurotrophin 3
ISO
RGD
PMID:16022868
RGD:4891112
NCBI chrNW_004955413:3,207,669...3,273,371
Ensembl chrNW_004955413:3,207,123...3,273,491
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Ntrk1
neurotrophic receptor tyrosine kinase 1
ISO
mRNA:decreased expression:spinal cord
RGD
PMID:18585435
RGD:2308892
NCBI chrNW_004955545:2,929,704...2,947,579
Ensembl chrNW_004955545:2,929,704...2,947,579
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Ntrk2
neurotrophic receptor tyrosine kinase 2
ISO
RGD
PMID:20597685 PMID:22027236
RGD:5684547 RGD:5684898
NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878
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Ntrk3
neurotrophic receptor tyrosine kinase 3
ISO
mRNA:decreased expression:spinal cord
RGD
PMID:18585435
RGD:2308892
NCBI chrNW_004955416:16,652,931...17,018,188
Ensembl chrNW_004955416:16,652,791...17,018,188
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Olig2
oligodendrocyte transcription factor 2
treatment
ISO
RGD
PMID:22173726 PMID:28452182
RGD:40902836 RGD:40902844
NCBI chrNW_004955407:32,432,888...32,436,209
Ensembl chrNW_004955407:32,433,849...32,434,923
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P2rx7
purinergic receptor P2X 7
ISO
CTD Direct Evidence: therapeutic
CTD
PMID:15258577
NCBI chrNW_004955482:7,048,674...7,087,525
Ensembl chrNW_004955482:7,048,776...7,086,926
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Parp1
poly(ADP-ribose) polymerase 1
ISO
CTD Direct Evidence: marker/mechanism
RGD CTD
PMID:15696051 PMID:21748659
RGD:10053608
NCBI chrNW_004955489:520,875...557,609
Ensembl chrNW_004955489:520,875...557,615
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Pdcd1
programmed cell death 1
treatment
ISO
RGD
PMID:29665726
RGD:40886268
NCBI chrNW_004955542:49,290...57,747
Ensembl chrNW_004955542:49,259...58,823
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Pdcd1lg2
programmed cell death 1 ligand 2
ISO
mRNA:increased expression:microglial cell
RGD
PMID:29665726
RGD:40886268
NCBI chrNW_004955434:9,540,047...9,559,335
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Pdgfb
platelet derived growth factor subunit B
ISO
RGD
PMID:21568693
RGD:6482306
NCBI chrNW_004955413:25,150,702...25,166,987
Ensembl chrNW_004955413:25,148,062...25,166,987
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Pla2g6
phospholipase A2 group VI
ISO
protein:increased expression:spinal cord
RGD
PMID:21868473
RGD:6482718
NCBI chrNW_004955413:24,431,592...24,482,229
Ensembl chrNW_004955413:24,429,589...24,482,537
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Plau
plasminogen activator, urokinase
ISO
RGD
PMID:21573723
RGD:6483797
NCBI chrNW_004955437:17,995,726...18,000,542
Ensembl chrNW_004955437:17,994,537...18,000,209
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Plaur
plasminogen activator, urokinase receptor
ISO
RGD
PMID:21573723
RGD:6483797
NCBI chrNW_004955555:1,378,505...1,393,395
Ensembl chrNW_004955555:1,378,793...1,393,324
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Pon1
paraoxonase 1
treatment
ISO
RGD
PMID:12897486
RGD:8547682
NCBI chrNW_004955432:11,893,473...11,923,035
Ensembl chrNW_004955432:11,893,473...11,923,339
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Ppard
peroxisome proliferator activated receptor delta
ISO
RGD
PMID:20058304
RGD:2324875
NCBI chrNW_004955437:3,285,281...3,354,099
Ensembl chrNW_004955437:3,288,830...3,357,048
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Ppargc1a
PPARG coactivator 1 alpha
ISO
RGD
PMID:22208735
RGD:6484263
NCBI chrNW_004955480:543,397...1,188,376
Ensembl chrNW_004955480:1,078,322...1,188,435
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Ppp1cc
protein phosphatase 1 catalytic subunit gamma
ISO
protein:increased expression:spinal cord, astrocyte, microglial cell
RGD
PMID:29033188
RGD:13514047
NCBI chrNW_004955482:7,582,605...7,605,340
Ensembl chrNW_004955482:7,578,782...7,606,132
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Ppp1r15a
protein phosphatase 1 regulatory subunit 15A
ISO
mRNA:increased expression:spinal cord (rat) CTD Direct Evidence: marker/mechanism
RGD CTD
PMID:17578450 PMID:29793971
RGD:9999410
NCBI chrNW_004955559:1,750,227...1,753,607
Ensembl chrNW_004955559:1,750,168...1,753,629
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Prkcg
protein kinase C gamma
ISO
protein:decreased expression:spinal cord (mouse)
RGD
PMID:10501452
RGD:28867228
NCBI chrNW_004955604:262,182...279,259
Ensembl chrNW_004955604:262,071...279,259
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Pten
phosphatase and tensin homolog
ISO
mRNA:increased expression:spinal cord:
RGD
PMID:28601045
RGD:156420142
NCBI chrNW_004955425:5,007,811...5,091,829
Ensembl chrNW_004955425:5,014,147...5,091,829
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Ptgs1
prostaglandin-endoperoxide synthase 1
ISO
protein:increased expression:microglia, macrophage
RGD
PMID:11063829 PMID:17184185
RGD:5688221 RGD:5688246
NCBI chrNW_004955419:5,678,750...5,699,305
Ensembl chrNW_004955419:5,678,694...5,699,305
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Ptgs2
prostaglandin-endoperoxide synthase 2
ISO
RGD
PMID:18606213
RGD:5135219
NCBI chrNW_004955406:25,077,988...25,086,259
Ensembl chrNW_004955406:25,079,945...25,086,171
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Ptprz1
protein tyrosine phosphatase receptor type Z1
treatment
ISO
RGD
PMID:12895450 PMID:15016081 PMID:18065151
RGD:9589823 RGD:9590113 RGD:9590124
NCBI chrNW_004955479:3,611,658...3,734,225
Ensembl chrNW_004955479:3,624,993...3,733,183
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Rad21
RAD21 cohesin complex component
treatment
ISO
RGD
PMID:33741460
RGD:243065262
NCBI chrNW_004955417:22,941,549...22,966,395
Ensembl chrNW_004955417:22,941,479...22,966,837
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Rara
retinoic acid receptor alpha
ISO
RGD
PMID:16420438
RGD:2314291
NCBI chrNW_004955451:14,876,663...14,917,134
Ensembl chrNW_004955451:14,897,726...14,917,134
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Rbmx
RNA binding motif protein X-linked
ISO
RGD
PMID:23180094
RGD:10053723
NCBI chrNW_004955489:8,280,842...8,286,252
Ensembl chrNW_004955489:8,280,794...8,286,252
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Rela
RELA proto-oncogene, NF-kB subunit
ISO
RGD
PMID:17918744
RGD:2298849
NCBI chrNW_004955422:19,602,930...19,612,263
Ensembl chrNW_004955422:19,603,345...19,611,516
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Rgma
repulsive guidance molecule BMP co-receptor a
treatment
ISO
RGD
PMID:16585268
RGD:9850138
NCBI chrNW_004955416:21,221,023...21,261,831
Ensembl chrNW_004955416:21,221,023...21,261,831
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Rhoa
ras homolog family member A
ISO
mRNA,protein:increased expression:spinal cord:
RGD
PMID:27893610
RGD:243048440
NCBI chrNW_004955532:1,300,821...1,347,453
Ensembl chrNW_004955532:1,300,462...1,347,451
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Robo1
roundabout guidance receptor 1
ISO
mRNA,protein:increased expression:spinal cord:
RGD
PMID:27893610
RGD:243048440
NCBI chrNW_004955407:12,593,911...13,485,723
Ensembl chrNW_004955407:13,107,235...13,487,053
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Rpsa
ribosomal protein SA
ISO
RGD
PMID:19196078
RGD:11041651
NCBI chrNW_004955420:29,978,160...29,983,544
G
Ryr1
ryanodine receptor 1
ISO
protein:hyperoxidation,hypernitrosylation:gastrocnemius muscle
RGD
PMID:27998200
RGD:329853757
NCBI chrNW_004955468:879,807...1,000,118
Ensembl chrNW_004955468:879,951...1,000,036
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Scn3a
sodium voltage-gated channel alpha subunit 3
ISO
RGD
PMID:16109750 PMID:16718433
RGD:2317320 RGD:2317321
NCBI chrNW_004955449:8,896,454...9,009,304
Ensembl chrNW_004955449:8,896,454...9,009,304
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Serpinc1
serpin family C member 1
treatment
ISO
RGD
PMID:15792522
RGD:1599333
NCBI chrNW_004955406:14,024,183...14,036,206
Ensembl chrNW_004955406:14,024,313...14,035,948
G
Shh
sonic hedgehog signaling molecule
treatment
ISO
RGD
PMID:24837681
RGD:12879409
NCBI chrNW_004955491:8,647,133...8,657,381
G
Siah1
siah E3 ubiquitin protein ligase 1
treatment
ISO
RGD
PMID:27256506
RGD:13792677
NCBI chrNW_004955474:6,970,383...6,982,231
Ensembl chrNW_004955474:6,978,130...6,981,189
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Slc25a27
solute carrier family 25 member 27
ISO
protein:increased expression:spinal cord
RGD
PMID:18534681
RGD:6482843
NCBI chrNW_004955437:11,497,308...11,514,208
Ensembl chrNW_004955437:11,497,308...11,514,208
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Slc7a5
solute carrier family 7 member 5
ISO
protein:increased expression:spinal cord
RGD
PMID:19388351
RGD:151361131
NCBI chrNW_004955541:2,103,437...2,129,668
Ensembl chrNW_004955541:2,103,384...2,130,310
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Slit1
slit guidance ligand 1
ISO
RGD
PMID:16262652
RGD:2316136
NCBI chrNW_004955507:3,204,135...3,365,319
Ensembl chrNW_004955507:3,201,556...3,365,471
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Slit2
slit guidance ligand 2
ISO
mRNA, protein:increased expression:spinal cord mRNA,protein:decreased expression:spinal cord:
RGD
PMID:19783284 PMID:27893610
RGD:2316127 RGD:243048440
NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
G
Slit3
slit guidance ligand 3
ISO
RGD
PMID:16262652
RGD:2316136
NCBI chrNW_004955408:21,719,487...22,322,958
Ensembl chrNW_004955408:21,722,632...22,322,917
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Smurf1
SMAD specific E3 ubiquitin protein ligase 1
ISO
protein:increased expression:spinal cord
RGD
PMID:23595775
RGD:10412063
NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879
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Socs2
suppressor of cytokine signaling 2
ISO
RGD
PMID:11723173
RGD:2298928
NCBI chrNW_004955405:30,349,956...30,623,849
Ensembl chrNW_004955405:30,366,866...30,375,468 Ensembl chrNW_004955405:30,366,866...30,375,468
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Sod1
superoxide dismutase 1
treatment
ISO
human gene in a rat model CTD Direct Evidence: therapeutic human protein in a rat model
RGD CTD
PMID:16689664 PMID:17457363 PMID:18722523
RGD:8655939 RGD:8655990
NCBI chrNW_004955407:31,261,451...31,267,657
Ensembl chrNW_004955407:31,263,863...31,267,727
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Sox2
SRY-box transcription factor 2
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:23169458
RGD:8661675
NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934
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Sparc
secreted protein acidic and cysteine rich
ISO
RGD
PMID:17611274
RGD:2300052
NCBI chrNW_004955408:6,100,123...6,122,460
Ensembl chrNW_004955408:6,099,003...6,122,459
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Spp1
secreted phosphoprotein 1
ISO
RGD
PMID:15592854
RGD:6483848
NCBI chrNW_004955474:1,914,477...1,922,025
Ensembl chrNW_004955474:1,913,829...1,922,016
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Sqstm1
sequestosome 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chrNW_004955408:757,426...764,989
Ensembl chrNW_004955408:757,426...771,615
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Tacr1
tachykinin receptor 1
ISO
RGD
PMID:18945947
RGD:2304258
NCBI chrNW_004955424:10,614,340...10,761,872
Ensembl chrNW_004955424:10,614,340...10,761,872
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Tbp
TATA-box binding protein
ISO
protein:increased expression:spinal cord, astrocyte, microglial cell
RGD
PMID:24710803
RGD:9681729
NCBI chrNW_004955411:3,268,147...3,285,567
Ensembl chrNW_004955411:3,268,147...3,285,077
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Tert
telomerase reverse transcriptase
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:15798365 PMID:23793903
RGD:11038671 RGD:2291993
NCBI chrNW_004955504:649,248...669,796
Ensembl chrNW_004955504:651,779...670,589
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Tgfb1
transforming growth factor beta 1
ISO
RGD
PMID:15145083
RGD:2302103
NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
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Tgfb2
transforming growth factor beta 2
ISO
RGD
PMID:15145083
RGD:2302103
NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
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Thbd
thrombomodulin
ISO
RGD
PMID:15307903
RGD:1580060
NCBI chrNW_004955415:30,222,830...30,226,406
G
Thbs1
thrombospondin 1
ISO
protein:increased expression:spinal cord
RGD
PMID:19719963
RGD:2317939
NCBI chrNW_004955416:6,490,034...6,506,419
Ensembl chrNW_004955416:6,489,451...6,506,419
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Tlr1
toll like receptor 1
treatment
ISO
mRNA:increased expression:spinal cord (mouse)
RGD
PMID:21970496
RGD:7246886
NCBI chrNW_004955443:8,442,419...8,450,318
Ensembl chrNW_004955443:8,447,956...8,450,382
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Tlr4
toll like receptor 4
severity
ISO
RGD
PMID:25990044
RGD:14700556
NCBI chrNW_004955419:10,190,937...10,201,896
Ensembl chrNW_004955419:10,191,120...10,202,135
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Tnc
tenascin C
ISO
mRNA:increased expression:spinal cord
RGD
PMID:11085900
RGD:4889619
NCBI chrNW_004955419:12,569,620...12,662,897
Ensembl chrNW_004955419:12,569,547...12,662,958
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Tnf
tumor necrosis factor
ISO
RGD
PMID:20633123
RGD:5131936
NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
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Tnfrsf1a
TNF receptor superfamily member 1A
ISO
protein:increased expression:cerebrospinal fluid
RGD
PMID:16083358
RGD:1624185
NCBI chrNW_004955413:3,982,670...3,996,320
Ensembl chrNW_004955413:3,981,400...3,996,021
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Tp53
tumor protein p53
ISO
protein:increased expression:spinal cord
RGD
PMID:23595775
RGD:10412063
NCBI chrNW_004955467:9,241,391...9,256,716
Ensembl chrNW_004955467:9,252,130...9,255,928
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Traf7
TNF receptor associated factor 7
ISO
mRNA, protein:increased expression:spinal cord
RGD
PMID:30100091
RGD:151356968
NCBI chrNW_004955442:15,092,955...15,112,842
Ensembl chrNW_004955442:15,092,955...15,112,840
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Trpa1
transient receptor potential cation channel subfamily A member 1
ISO
mRNA,protein:increased expression:urinary bladder, dorsal root ganglion:
RGD
PMID:21367919
RGD:10043365
NCBI chrNW_004955444:7,876,284...7,922,010
Ensembl chrNW_004955444:7,876,429...7,921,372
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Trpm4
transient receptor potential cation channel subfamily M member 4
treatment
ISO
RGD
PMID:19169264 PMID:25763638
RGD:10003030 RGD:12791993
NCBI chrNW_004955559:1,539,036...1,581,800
Ensembl chrNW_004955559:1,546,365...1,581,712
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Ulk1
unc-51 like autophagy activating kinase 1
ISO
protein:increased expression:neuron, axon
RGD
PMID:25040536
RGD:11553820
NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133
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Vegfa
vascular endothelial growth factor A
ISO
CTD Direct Evidence: marker/mechanism protein:increased expression:spinal cord
CTD RGD
PMID:21092735
RGD:5148013
NCBI chrNW_004955437:9,527,445...9,541,908
G
Vhl
von Hippel-Lindau tumor suppressor
ISO
RGD
PMID:20125055
RGD:2325181
NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511
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Vim
vimentin
ISO
protein:increased expression:spinal cord
RGD
PMID:10225952 PMID:21250919
RGD:6480471 RGD:6480511
NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
G
Vwf
von Willebrand factor
ISO
RGD
PMID:25771801
RGD:13673888
NCBI chrNW_004955413:3,672,470...3,825,588
Ensembl chrNW_004955413:3,672,470...3,819,571
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Xbp1
X-box binding protein 1
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:29793971
NCBI chrNW_004955455:3,037,885...3,041,827
G
Xylt1
xylosyltransferase 1
ISO
RGD
PMID:18765417
RGD:2313145
NCBI chrNW_004955442:1,787,338...2,042,523
Ensembl chrNW_004955442:1,745,924...2,036,340
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Adamts13
ADAM metallopeptidase with thrombospondin type 1 motif 13
ISO
mRNA, protein:increased expression, increased activity:spinal cord (rat)
RGD
PMID:22425718
RGD:10449098
NCBI chrNW_004955513:2,761,386...2,786,447
Ensembl chrNW_004955513:2,764,186...2,786,187
G
Amigo3
adhesion molecule with Ig like domain 3
ISO
mRNA, protein:increased expression:dorsal root ganglion (rat)
RGD
PMID:23613963
RGD:14390159
NCBI chrNW_004955532:1,618,659...1,621,706
Ensembl chrNW_004955532:1,619,532...1,621,064
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Chst14
carbohydrate sulfotransferase 14
exacerbates
ISO
RGD
PMID:26586562
RGD:155663489
NCBI chrNW_004955416:7,391,281...7,393,137
Ensembl chrNW_004955416:7,391,282...7,392,355
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Egr1
early growth response 1
ISO
protein:increased expression:spinal cord dorsal horn (rat)
RGD
PMID:20675054
RGD:5131876
NCBI chrNW_004955418:2,001,509...2,005,269
Ensembl chrNW_004955418:2,002,699...2,005,007
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Epo
erythropoietin
ISO
protein:increased expression:neuron, endothelium, glia:
RGD
PMID:15792521
RGD:11041719
NCBI chrNW_004955573:203,875...206,078
Ensembl chrNW_004955573:203,441...206,355
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Epor
erythropoietin receptor
ISO
protein:increased expression:neuron, endothelium, glia:
RGD
PMID:15792521
RGD:11041719
NCBI chrNW_004955495:2,293,587...2,299,302
Ensembl chrNW_004955495:2,293,540...2,298,715
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Fas
Fas cell surface death receptor
treatment
ISO
human protein in a rat model protein:increased expression:spinal cord:
RGD
PMID:16202410 PMID:16689665 PMID:21490053
RGD:12904017 RGD:1582444 RGD:8663485
NCBI chrNW_004955425:3,961,671...3,987,513
Ensembl chrNW_004955425:3,961,013...3,987,455
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Faslg
Fas ligand
treatment
ISO
protein:increased expression:spinal cord:
RGD
PMID:21490053
RGD:12904017
NCBI chrNW_004955406:13,098,479...13,107,045
Ensembl chrNW_004955406:13,098,662...13,107,389
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Fgf2
fibroblast growth factor 2
ISO
protein:increased expression:spinal cord
RGD
PMID:17244329
RGD:8655633
NCBI chrNW_004955428:17,840,554...17,894,779
Ensembl chrNW_004955428:17,840,628...17,894,773
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Fgfr2
fibroblast growth factor receptor 2
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:28981091
RGD:155782905
NCBI chrNW_004955551:2,321,190...2,427,000
G
Fis1
fission, mitochondrial 1
treatment
ISO
RGD
PMID:25595990
RGD:12437079
NCBI chrNW_004955456:16,057,158...16,060,623
Ensembl chrNW_004955456:16,038,221...16,060,623
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Hmgcs1
3-hydroxy-3-methylglutaryl-CoA synthase 1
ISO
protein:decreased expression:spinal cord, thoracic vertebrae (rat)
RGD
PMID:20399821
RGD:2326108
NCBI chrNW_004955446:18,978,261...18,996,794
Ensembl chrNW_004955446:18,978,102...18,998,951
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Hspa4
heat shock protein family A (Hsp70) member 4
ISO
protein:increased expression:spinal cord (mouse)
RGD
PMID:21787762
RGD:6218959
NCBI chrNW_004955408:4,379,825...4,422,710
Ensembl chrNW_004955408:4,379,825...4,423,381
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Il6
interleukin 6
ISO
protein:increased expression:cerebrospinal fluid, serum
RGD
PMID:30327453
RGD:14975119
NCBI chrNW_004955410:25,079,835...25,084,390
G
Itgam
integrin subunit alpha M
treatment
ISO
RGD
PMID:19457130
RGD:329902059
NCBI chrNW_004955493:8,116,886...8,160,806
Ensembl chrNW_004955493:8,116,834...8,260,759
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L1cam
L1 cell adhesion molecule
ISO
RGD
PMID:21671795
RGD:6483029
NCBI chrNW_004955580:548,442...561,580
Ensembl chrNW_004955580:549,368...561,486
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LOC102018844
neutrophil elastase
treatment
ISO
RGD
PMID:9675307
RGD:10450552
NCBI chrNW_004955495:6,964,577...6,967,208
Ensembl chrNW_004955495:6,964,667...6,967,106
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Nos3
nitric oxide synthase 3
treatment
ISO
RGD
PMID:29323048
RGD:13504709
NCBI chrNW_004955491:5,438,228...5,457,308
Ensembl chrNW_004955491:5,438,010...5,460,814
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Plat
plasminogen activator, tissue type
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:12227717
NCBI chrNW_004955536:730,962...754,333
Ensembl chrNW_004955536:730,981...756,394
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Tnf
tumor necrosis factor
ISO
CTD Direct Evidence: marker/mechanism
CTD
PMID:15135227
NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
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Tnfrsf1a
TNF receptor superfamily member 1A
ISO
protein:increased expression:spinal cord (rat)
RGD
PMID:21224756
RGD:5130917
NCBI chrNW_004955413:3,982,670...3,996,320
Ensembl chrNW_004955413:3,981,400...3,996,021
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Tnfrsf1b
TNF receptor superfamily member 1B
ISO
protein:increased expression:spinal cord (rat) human protein in rat model
RGD
PMID:21224756
RGD:5130917
NCBI chrNW_004955486:1,790,531...1,817,986
Ensembl chrNW_004955486:1,792,115...1,818,362
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all