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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:atrophic gastritis
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Accession:DOID:8929 term browser browse the term
Definition:GASTRITIS with atrophy of the GASTRIC MUCOSA, the GASTRIC PARIETAL CELLS, and the mucosal glands leading to ACHLORHYDRIA. Atrophic gastritis usually progresses from chronic gastritis.
Synonyms:exact_synonym: atrophic gastritides;   gastric atrophy
 primary_id: MESH:D005757
 xref: EFO:1000826;   ICD10CM:K29.4;   ICD9CM:535.1;   NCI:C7405
For additional species annotation, visit the Alliance of Genome Resources.


show annotations for term's descendants           Sort by:
atrophic gastritis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4b ATPase H+/K+ transporting subunit beta ISO RGD PMID:30539573 RGD:14696739 NCBI chr16:82,846,329...82,855,242
Ensembl chr16:82,846,329...82,855,242 		JBrowse link
G Il1b interleukin 1 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:19448967 NCBI chr 3:137,030,200...137,036,581
Ensembl chr 3:137,030,205...137,036,601 		JBrowse link
G Mir146a microRNA 146a exacerbates ISO associated with Helicobacter Infections;miRNA:SNP, haplotype: (rs2910164) (human) RGD PMID:20721625 RGD:126925150 NCBI chr10:28,349,996...28,350,090 JBrowse link
G Mir155 microRNA 155 treatment IEP RGD PMID:27293468 RGD:25671480 NCBI chr11:37,261,114...37,261,178
Ensembl chr11:37,261,114...37,261,178 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 severity ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr 2:226,689,745...226,805,897
Ensembl chr 2:226,689,745...226,783,088 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr 1:255,106,010...255,114,649
Ensembl chr 1:255,107,374...255,114,637 		JBrowse link
G Pth parathyroid hormone ISO protein:increased expression:serum (human) RGD PMID:23447517 RGD:7242421 NCBI chr 1:176,942,901...176,946,034
Ensembl chr 1:176,943,102...176,946,034 		JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 susceptibility
severity 		ISO associated with Helicobacter Infections; DNA:SNP:Cds:
associated with Helicobacter Infections;DNA:SNP:intron: rs2301756(human)
DNA:SNP:intron:rs2301756 (human)
associated with Helicobacter Infections; DNA:SNP: :rs12423190 (human 		RGD PMID:17211494 PMID:19589142 PMID:18712962 PMID:22788847 RGD:39128202, RGD:39128247, RGD:39131286, RGD:39131289 NCBI chr12:41,026,079...41,085,577
Ensembl chr12:41,043,785...41,085,577 		JBrowse link
G Rel REL proto-oncogene, NF-kB subunit ISO associated with Helicobacter Infections RGD PMID:23975431 RGD:40902973 NCBI chr14:101,891,238...101,922,324
Ensembl chr14:101,891,243...101,921,938 		JBrowse link
G RT1-Bb RT1 class II, locus Bb susceptibility ISO DNA:polymorphism (human)
associated with Helicobacter Infections; DNA:polymorphism: :HLA- DQB1*0401(human) 		RGD PMID:20082482 PMID:10616761 RGD:5147582, RGD:36174021 NCBI chr20:4,598,475...4,604,118
Ensembl chr20:4,598,475...4,604,118 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 ISO DNA:polymorphism (human) RGD PMID:20082482 RGD:5147582 NCBI chr20:4,550,594...4,560,182
Ensembl chr20:4,550,596...4,560,165 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19167
    disease of anatomical entity 18473
      gastrointestinal system disease 7168
        gastroenteritis 571
          gastritis 30
            atrophic gastritis 11
Path 2
Term Annotations click to browse term
  disease 19167
    disease of anatomical entity 18473
      Immune & Inflammatory Diseases 5781
        Inflammation 2852
          gastroenteritis 571
            gastritis 30
              atrophic gastritis 11
paths to the root