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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:smallpox
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Accession:DOID:8736 term browser browse the term
Definition:A viral infectious disease that results in infection located in skin, has_material_basis_in Variola virus, which is transmitted by droplets from oral, nasal or pharyngeal mucosa, transmitted by contact with the body fluids, or transmitted by fomites. The infection results in formation of lesions, first on the face, hands and forearms and later on the trunk. (DO)
Synonyms:exact_synonym: ordinary smallpox;   variola;   variolas
 primary_id: MESH:D012899
 xref: GARD:7444;   ICD10CM:B03;   ICD9CM:050;   NCI:C35027
For additional species annotation, visit the Alliance of Genome Resources.



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smallpox term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irf1 interferon regulatory factor 1 treatment ISO
ISS
DNA:SNPs,haplotype: :rs839, rs9282763(human) MouseDO
RGD
PMID:18454680 RGD:42722608 NCBI chr10:37,917,155...37,924,166
Ensembl chr10:37,916,670...37,924,166
JBrowse link
G Mthfr methylenetetrahydrofolate reductase treatment ISO
ISS
DNA:SNP:exon:rs1801133(human) MouseDO
RGD
PMID:18454680 RGD:42722608 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 0
    disease by infectious agent 2136
      viral infectious disease 1674
        Viral Skin Diseases 174
          smallpox 2
            variola major 0
            variola minor 0
Path 2
Term Annotations click to browse term
  disease 18145
    disease of anatomical entity 17519
      nervous system disease 13182
        sensory system disease 6393
          skin disease 3775
            Infectious Skin Diseases 364
              Viral Skin Diseases 174
                smallpox 2
                  variola major 0
                  variola minor 0
paths to the root